Package evaluation to test KomaMRI on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T08:56:03.477 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.12s ################################################################################ # Installation # Installing KomaMRI... Resolving package versions... Installed Knockout ───── v0.2.6 Installed InteractBase ─ v0.10.11 Installed Interact ───── v0.10.5 Installed PlotlyJS ───── v0.18.18 Installed WebIO ──────── v0.8.21 Updating `~/.julia/environments/v1.12/Project.toml` [6a340f8b] + KomaMRI v0.10.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.9.1 [6a4ca0a5] + AcceleratedKernels v0.4.3 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.25.0 [bf4720bc] + AssetRegistry v0.1.1 [a9b6321e] + Atomix v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [198e06fe] + BangBang v0.4.9 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [0e736298] + Bessels v0.2.8 [d1d4a3ce] + BitFlags v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [ad839575] + Blink v0.12.9 [2a0fbf3d] + CPUSummary v0.2.7 [70588ee8] + CSSUtil v0.1.1 [d360d2e6] + ChainRulesCore v1.26.1 [ae650224] + ChunkSplitters v3.2.0 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [717857b8] + DSP v0.8.5 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [5789e2e9] + FileIO v1.19.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [de31a74c] + FunctionalCollections v0.5.0 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [f67ccb44] + HDF5 v0.17.3 ⌅ [cd3eb016] + HTTP v1.11.0 [076d061b] + HashArrayMappedTries v0.2.0 [9fb69e20] + Hiccup v0.2.2 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 [c601a237] + Interact v0.10.5 [d3863d7c] + InteractBase v0.10.11 [a98d9a8b] + Interpolations v0.16.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [63c18a36] + KernelAbstractions v0.9.41 [bcebb21b] + Knockout v0.2.6 [6a340f8b] + KomaMRI v0.10.4 [d0bc0b20] + KomaMRIBase v0.11.3 [4baa4f4d] + KomaMRICore v0.11.3 [fcf631a6] + KomaMRIFiles v0.10.4 [76db0263] + KomaMRIPlots v0.11.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [50d2b5c4] + Lazy v0.15.1 [9c8b4983] + LightXML v0.9.3 [a4a2c56f] + LinearOperatorCollection v2.4.2 [5c8ed15e] + LinearOperators v2.14.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [23992714] + MAT v0.12.1 [6ac74813] + MD5 v0.2.3 [3da0fdf6] + MPIPreferences v0.1.12 [f7771a9a] + MRIBase v0.4.6 [5a6f062f] + MRIFiles v0.3.2 [fb1137e3] + MRIOperators v0.4.3 [bdf86e05] + MRIReco v0.9.2 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [739be429] + MbedTLS v1.1.10 [442fdcdd] + Measures v0.3.3 [c03570c3] + Memoize v0.4.4 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [efe261a4] + NFFT v0.14.3 ⌅ [7424e34d] + NFFTTools v0.2.7 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [67456a42] + OhMyThreads v0.8.6 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌅ [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.6 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [f27b6e38] + Polynomials v4.1.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [2bec176e] + QMRIColors v1.0.1 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [1e9c538a] + RegularizedLeastSquares v0.16.12 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [171d559e] + SplittablesBase v0.1.15 [91464d47] + StableTasks v0.1.7 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [69024149] + StringEncodings v0.3.7 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [62fd8b95] + TensorCore v0.1.1 [ac1d9e8a] + ThreadsX v0.1.12 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [013be700] + UnsafeAtomics v0.3.1 [3d5dd08c] + VectorizationBase v0.21.74 [29a6e085] + Wavelets v0.10.1 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [efce3f68] + WoodburyMatrices v1.1.0 [f5851436] + FFTW_jll v3.3.12+0 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.7+0 [9aeb927a] + mpif_jll v0.1.7+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building WebIO ───────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building Knockout ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/91835de56d816864f1c38fb5e3fad6eb1e741271/build.log` Building InteractBase → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/31b14c2523bfc02137995f93b829ebd5eb85c67c/build.log` Building Interact ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/c5091992248c7134af7c90554305c600d5d9012b/build.log` Building PlotlyJS ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4bf6c08295346efba58bb2d5f8c52984efed7f27/build.log` Installation completed after 51.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 2929.1 ms ✓ QMRIColors 34722.9 ms ? KomaMRICore 21677.1 ms ✓ KomaMRIFiles 81901.1 ms ✓ KomaMRIPlots 296423.4 ms ✓ KomaMRI 4 dependencies successfully precompiled in 443 seconds. 288 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 170 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ KomaMRICore │ WARNING: Method definition adapt_storage(Type{Array{T, N} where N}, SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) where {T} in module AdaptSparseArraysExt at /home/pkgeval/.julia/packages/Adapt/LcM3J/ext/AdaptSparseArraysExt.jl:9 overwritten in module AdaptSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 467.03s ################################################################################ # Testing # Testing KomaMRI Status `/tmp/jl_jQ7TEK/Project.toml` [ad839575] Blink v0.12.9 [c601a237] Interact v0.10.5 [6a340f8b] KomaMRI v0.10.4 [23992714] MAT v0.12.1 [f8b46487] TestItemRunner v1.1.5 [1c621080] TestItems v1.0.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jQ7TEK/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.9.1 [6a4ca0a5] AcceleratedKernels v0.4.3 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.25.0 [bf4720bc] AssetRegistry v0.1.1 [a9b6321e] Atomix v1.1.3 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.9 [9718e550] Baselet v0.1.1 [26cce99e] BasicInterpolators v0.7.1 [0e736298] Bessels v0.2.8 [d1d4a3ce] BitFlags v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [ad839575] Blink v0.12.9 [2a0fbf3d] CPUSummary v0.2.7 [70588ee8] CSSUtil v0.1.1 [d360d2e6] ChainRulesCore v1.26.1 [ae650224] ChunkSplitters v3.2.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [717857b8] DSP v0.8.5 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.10.0 [9aa1b823] FastClosures v0.3.2 [5789e2e9] FileIO v1.19.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [de31a74c] FunctionalCollections v0.5.0 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [f67ccb44] HDF5 v0.17.3 ⌅ [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [9fb69e20] Hiccup v0.2.2 [3e5b6fbb] HostCPUFeatures v0.1.18 [615f187c] IfElse v0.1.1 [22cec73e] InitialValues v0.3.1 [c601a237] Interact v0.10.5 [d3863d7c] InteractBase v0.10.11 [a98d9a8b] Interpolations v0.16.3 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.41 [bcebb21b] Knockout v0.2.6 [6a340f8b] KomaMRI v0.10.4 [d0bc0b20] KomaMRIBase v0.11.3 [4baa4f4d] KomaMRICore v0.11.3 [fcf631a6] KomaMRIFiles v0.10.4 [76db0263] KomaMRIPlots v0.11.0 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [50d2b5c4] Lazy v0.15.1 [9c8b4983] LightXML v0.9.3 [a4a2c56f] LinearOperatorCollection v2.4.2 [5c8ed15e] LinearOperators v2.14.1 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [23992714] MAT v0.12.1 [6ac74813] MD5 v0.2.3 [3da0fdf6] MPIPreferences v0.1.12 [f7771a9a] MRIBase v0.4.6 [5a6f062f] MRIFiles v0.3.2 [fb1137e3] MRIOperators v0.4.3 [bdf86e05] MRIReco v0.9.2 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [739be429] MbedTLS v1.1.10 [442fdcdd] Measures v0.3.3 [c03570c3] Memoize v0.4.4 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [efe261a4] NFFT v0.14.3 ⌅ [7424e34d] NFFTTools v0.2.7 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [67456a42] OhMyThreads v0.8.6 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.18 [f2990250] PlotlyKaleido v2.3.1 [f27b6e38] Polynomials v4.1.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [2bec176e] QMRIColors v1.0.1 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [1e9c538a] RegularizedLeastSquares v0.16.12 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [431bcebd] SciMLPublic v1.0.1 [7e506255] ScopedValues v1.6.2 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [171d559e] SplittablesBase v0.1.15 [91464d47] StableTasks v0.1.7 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [69024149] StringEncodings v0.3.7 [9449cd9e] TSVD 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v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Input and output files: Error During Test at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:148 Test threw exception Expression: KomaMRI.load_cli_phantom(phantom_file) isa KomaMRI.Phantom unable to determine if /home/pkgeval/.julia/packages/KomaMRI/4DVvE/KomaMRIFiles/test/test_files/phantom/brain_nomotion_w.phantom is accessible in the HDF5 format (file may not exist) Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] h5open(filename::String, mode::String, fapl::HDF5.FileAccessProperties, fcpl::HDF5.FileCreateProperties; swmr::Bool) @ HDF5 ~/.julia/packages/HDF5/8g5ny/src/file.jl:48 [3] h5open @ ~/.julia/packages/HDF5/8g5ny/src/file.jl:20 [inlined] [4] h5open(filename::String, mode::String; swmr::Bool, fapl::HDF5.FileAccessProperties, fcpl::HDF5.FileCreateProperties, pv::@Kwargs{}) @ HDF5 ~/.julia/packages/HDF5/8g5ny/src/file.jl:75 [5] h5open(filename::String, mode::String) @ HDF5 ~/.julia/packages/HDF5/8g5ny/src/file.jl:63 [6] read_phantom(filename::String) @ KomaMRIFiles ~/.julia/packages/KomaMRIFiles/v8cda/src/Phantom/Phantom.jl:7 [7] load_cli_phantom(filename::String) @ KomaMRI ~/.julia/packages/KomaMRI/4DVvE/src/KomaCLI.jl:227 [8] top-level scope @ ~/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:144 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [10] macro expansion @ ~/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:148 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] ┌ Warning: Scanner file input is accepted but ignored for now │ file = "scanner.sys" └ @ KomaMRI ~/.julia/packages/KomaMRI/4DVvE/src/KomaCLI.jl:218 ┌ Info: KomaMRI loaded successfully 🚀 │ KomaMRI = "0.10.4" │ KomaMRIBase = "0.11.3" │ KomaMRICore = "0.11.3" │ KomaMRIFiles = "0.10.4" └ KomaMRIPlots = "0.11.0" [ Info: Simulation will be run on the CPU with only 1 thread. To enable multi-threading, start julia with --threads=auto ┌ Info: Running simulation in the CPU with 1 thread(s) │ koma_version = v"0.11.3" │ sim_method = KomaMRICore.Bloch() │ spins = 6506 │ time_points = 11175 └ adc_points = 10201 Running simulation... 8%|██▌ | ETA: 0:05:23 simulated_blocks: 2 rf_blocks: 1 acq_samples: 0       Running simulation... 12%|███▊ | ETA: 0:03:34 simulated_blocks: 3 rf_blocks: 1 acq_samples: 470       Running simulation... 17%|█████ | ETA: 0:02:35 simulated_blocks: 4 rf_blocks: 1 acq_samples: 937       Running simulation... 21%|██████▎ | ETA: 0:01:59 simulated_blocks: 5 rf_blocks: 1 acq_samples: 1413       Running simulation... 25%|███████▌ | ETA: 0:01:34 simulated_blocks: 6 rf_blocks: 1 acq_samples: 1880       Running simulation... 29%|████████▊ | ETA: 0:01:17 simulated_blocks: 7 rf_blocks: 1 acq_samples: 2347       Running simulation... 33%|██████████ | ETA: 0:01:04 simulated_blocks: 8 rf_blocks: 1 acq_samples: 2823       Running simulation... 38%|███████████▎ | ETA: 0:00:54 simulated_blocks: 9 rf_blocks: 1 acq_samples: 3290       Running simulation... 42%|████████████▌ | ETA: 0:00:46 simulated_blocks: 10 rf_blocks: 1 acq_samples: 3757       Running simulation... 46%|█████████████▊ | ETA: 0:00:39 simulated_blocks: 11 rf_blocks: 1 acq_samples: 4233       Running simulation... 50%|███████████████ | ETA: 0:00:33 simulated_blocks: 12 rf_blocks: 1 acq_samples: 4700       Running simulation... 54%|████████████████▎ | ETA: 0:00:28 simulated_blocks: 13 rf_blocks: 1 acq_samples: 5167       Running simulation... 58%|█████████████████▌ | ETA: 0:00:24 simulated_blocks: 14 rf_blocks: 1 acq_samples: 5641       Running simulation... 62%|██████████████████▊ | ETA: 0:00:20 simulated_blocks: 15 rf_blocks: 1 acq_samples: 6098       Running simulation... 67%|████████████████████ | ETA: 0:00:17 simulated_blocks: 16 rf_blocks: 1 acq_samples: 6565       Running simulation... 71%|█████████████████████▎ | ETA: 0:00:14 simulated_blocks: 17 rf_blocks: 1 acq_samples: 7036       Running simulation... 75%|██████████████████████▌ | ETA: 0:00:12 simulated_blocks: 18 rf_blocks: 1 acq_samples: 7503       Running simulation... 79%|███████████████████████▊ | ETA: 0:00:09 simulated_blocks: 19 rf_blocks: 1 acq_samples: 7976       Running simulation... 83%|█████████████████████████ | ETA: 0:00:07 simulated_blocks: 20 rf_blocks: 1 acq_samples: 8438       Running simulation... 88%|██████████████████████████▎ | ETA: 0:00:05 simulated_blocks: 21 rf_blocks: 1 acq_samples: 8901       Running simulation... 92%|███████████████████████████▌ | ETA: 0:00:03 simulated_blocks: 22 rf_blocks: 1 acq_samples: 9373       Running simulation... 96%|████████████████████████████▊ | ETA: 0:00:02 simulated_blocks: 23 rf_blocks: 1 acq_samples: 9834       Running simulation... 100%|██████████████████████████████| Time: 0:00:36 simulated_blocks: 24 rf_blocks: 1 acq_samples: 10201 36.171633 seconds (26.98 M allocations: 1.509 GiB, 5.61% gc time, 82.99% compilation time) ┌ Info: KomaMRI loaded successfully 🚀 │ KomaMRI = "0.10.4" │ KomaMRIBase = "0.11.3" │ KomaMRICore = "0.11.3" │ KomaMRIFiles = "0.10.4" └ KomaMRIPlots = "0.11.0" WARNING: Method definition (::Type{Blink.AtomShell.Window})(Any...) in module AtomShell at /home/pkgeval/.julia/packages/Blink/tnO3a/src/AtomShell/window.jl:100 overwritten at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:11. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, Type{Blink.AtomShell.Window}, Any...) in module AtomShell at /home/pkgeval/.julia/packages/Blink/tnO3a/src/AtomShell/window.jl:100 overwritten at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:11. WARNING: Method definition init() in module AtomShell at /home/pkgeval/.julia/packages/Blink/tnO3a/src/AtomShell/process.jl:85 overwritten at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:12. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Blink.AtomShell.init)) in module AtomShell at /home/pkgeval/.julia/packages/Blink/tnO3a/src/AtomShell/process.jl:85 overwritten at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:12. KomaUI: Error During Test at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:214 Got exception outside of a @test LoadError: IOError: connect: connection refused (ECONNREFUSED) Stacktrace: [1] wait_connected(x::Sockets.TCPSocket) @ Sockets /opt/julia/share/julia/stdlib/v1.12/Sockets/src/Sockets.jl:544 [2] connect @ /opt/julia/share/julia/stdlib/v1.12/Sockets/src/Sockets.jl:579 [inlined] [3] connect(addr::Sockets.IPv4, port::Int64) @ Sockets /opt/julia/share/julia/stdlib/v1.12/Sockets/src/Sockets.jl:565 [4] try_connect(::Sockets.IPv4, ::Vararg{Any}; interval::Float64, attempts::Int64) @ Blink.AtomShell ~/.julia/packages/Blink/tnO3a/src/AtomShell/process.jl:77 [5] try_connect @ ~/.julia/packages/Blink/tnO3a/src/AtomShell/process.jl:74 [inlined] [6] init(; debug::Bool) @ Blink.AtomShell ~/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:19 [7] init @ ~/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:12 [inlined] [8] #shell#5 @ ~/.julia/packages/Blink/tnO3a/src/AtomShell/process.jl:147 [inlined] [9] shell @ ~/.julia/packages/Blink/tnO3a/src/AtomShell/process.jl:138 [inlined] [10] #Window#22 @ ~/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:11 [inlined] [11] setup_blink_window(; darkmode::Bool, frame::Bool, dev_tools::Bool, show_window::Bool) @ KomaMRI ~/.julia/packages/KomaMRI/4DVvE/src/ui/ExportUIFunctions.jl:9 [12] setup_blink_window @ ~/.julia/packages/KomaMRI/4DVvE/src/ui/ExportUIFunctions.jl:4 [inlined] [13] KomaUI(; darkmode::Bool, frame::Bool, phantom_mode::String, sim::Dict{String, Any}, rec::Dict{Symbol, Any}, sys::Nothing, seq::Nothing, obj::Nothing, verbose::Bool, return_window::Bool, show_window::Bool, dev_tools::Bool) @ KomaMRI ~/.julia/packages/KomaMRI/4DVvE/src/KomaUI.jl:78 [14] top-level scope @ ~/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:225 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2883 [18] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:119 [inlined] [19] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/GnoVt/src/vendored_code.jl:7 [20] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:118 [inlined] [21] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [22] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:117 [23] run_tests(path::String; filter::var"#2#3", verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:231 [24] top-level scope @ ~/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [26] top-level scope @ none:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [29] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:223 Test Summary: | Pass Error Total Time Package | 83 2 85 7m58.2s test/runtests.jl | 83 2 85 7m58.2s MRIReco recon | 3 3 3m40.4s KomaCLI | 80 1 81 4m03.7s Defaults | 9 9 1.8s Inputs and outputs | 20 20 0.0s Parameters and backend | 11 11 1.1s Preferences | 11 11 0.4s Input and output files | 10 1 11 1m41.7s Batch execution | 2 2 2m17.3s App help | 5 5 0.2s Errors | 12 12 0.8s KomaUI | 1 1 14.0s ERROR: LoadError: Some tests did not pass: 83 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/KomaMRI/4DVvE/test/runtests.jl:3 Testing failed after 542.4s ERROR: LoadError: Package KomaMRI errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1096.76s: networking-related issues were detected