Package evaluation to test Knockoffs on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T06:38:09.586 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.85s ################################################################################ # Installation # Installing Knockoffs... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [878bf26d] + Knockoffs v3.1.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [67c07d97] + Automa v1.2.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] + BlockDiagonals v0.1.42 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [d360d2e6] + ChainRulesCore v1.26.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [fdbdab4c] + ElasticArrays v1.2.12 [4e289a0a] + EnumX v1.0.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [26cc04aa] + FiniteDifferences v0.12.34 [f6369f11] + ForwardDiff v1.4.1 [38e38edf] + GLM v1.9.5 ⌃ [8d5ece8b] + GLMNet v0.7.0 ⌅ [14197337] + GenericLinearAlgebra v0.3.19 [c27321d9] + Glob v1.5.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 ⌅ [b99e6be6] + Hypatia v0.7.4 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [4076af6c] + JuMP v1.30.1 [878bf26d] + Knockoffs v3.1.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v1.0.1 [bdcacae8] + LoopVectorization v0.12.174 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.51.1 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.8.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.27 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.6 [1d0040c9] + PolyesterWeave v0.2.2 [3a141323] + PolynomialRoots v1.0.0 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.3 [79098fc4] + Rmath v0.9.0 ⌅ [f2b01f46] + Roots v2.3.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.0.1 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.23 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.10 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ffd25f8a] + XZ_jll v5.8.3+0 [3161d3a3] + Zstd_jll v1.5.7+1 [78c6b45d] + glmnet_jll v5.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 87411.9 ms ✓ MathOptInterface 96814.3 ms ✓ SnpArrays 170489.5 ms ✓ JuMP 13456.9 ms ✓ Hypatia 105098.9 ms ✓ Optim → OptimMOIExt 800585.0 ms ✓ Knockoffs 6 dependencies successfully precompiled in 1311 seconds. 249 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 138 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 1316.99s ################################################################################ # Testing # Testing Knockoffs Status `/tmp/jl_XoaCYs/Project.toml` ⌅ [0a1fb500] BlockDiagonals v0.1.42 [336ed68f] CSV v0.10.16 [aaaa29a8] Clustering v0.15.8 [587fd27a] CovarianceEstimation v0.2.13 [a93c6f00] DataFrames v1.8.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.127 [fdbdab4c] ElasticArrays v1.2.12 [38e38edf] GLM v1.9.5 ⌃ [8d5ece8b] GLMNet v0.7.0 ⌅ [b99e6be6] Hypatia v0.7.4 [4076af6c] JuMP v1.30.1 [878bf26d] Knockoffs v3.1.4 [bdcacae8] LoopVectorization v0.12.174 ⌅ [429524aa] Optim v1.13.3 [85a6dd25] PositiveFactorizations v0.2.4 [92933f4c] ProgressMeter v1.11.0 [189a3867] Reexport v1.2.2 ⌅ [f2b01f46] Roots v2.3.0 [4e780e97] SnpArrays v0.3.23 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.10 [c751599d] ToeplitzMatrices v0.8.5 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XoaCYs/Manifest.toml` [47edcb42] ADTypes v1.22.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [67c07d97] Automa v1.2.0 [28d598bf] BGZFStreams v0.3.2 [0e736298] Bessels v0.2.8 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] BlockDiagonals v0.1.42 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [587fd27a] CovarianceEstimation v0.2.13 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [717857b8] DSP v0.8.5 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [fdbdab4c] ElasticArrays v1.2.12 [4e289a0a] EnumX v1.0.7 [7a1cc6ca] FFTW v1.10.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [26cc04aa] FiniteDifferences v0.12.34 [f6369f11] ForwardDiff v1.4.1 [38e38edf] GLM v1.9.5 ⌃ [8d5ece8b] GLMNet v0.7.0 ⌅ [14197337] GenericLinearAlgebra v0.3.19 [c27321d9] Glob v1.5.0 [3e5b6fbb] HostCPUFeatures v0.1.18 ⌅ [b99e6be6] Hypatia v0.7.4 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [4076af6c] JuMP v1.30.1 [878bf26d] Knockoffs v3.1.4 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 ⌃ [d3d80556] LineSearches v7.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v1.0.1 [bdcacae8] LoopVectorization v0.12.174 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.51.1 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.8.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.4 [b8a86587] NearestNeighbors v0.4.27 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.6 [1d0040c9] PolyesterWeave v0.2.2 [3a141323] PolynomialRoots v1.0.0 [f27b6e38] Polynomials v4.1.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.3 [79098fc4] Rmath v0.9.0 ⌅ [f2b01f46] Roots v2.3.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [431bcebd] SciMLPublic v1.0.1 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.23 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.10 [4c63d2b9] StatsFuns v2.2.0 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [9449cd9e] TSVD v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.6 [c751599d] ToeplitzMatrices v0.8.5 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [f5851436] FFTW_jll v3.3.12+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.3+0 [3161d3a3] Zstd_jll v1.5.7+1 [78c6b45d] glmnet_jll v5.0.0+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 46249.0 ms ✓ Polynomials 3877.2 ms ✓ Polynomials → PolynomialsFFTWExt 7052.0 ms ✓ DSP 7741.3 ms ✓ ToeplitzMatrices 4 dependencies successfully precompiled in 66 seconds. 59 already precompiled. 49 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CompilerSupportLibraries_jll, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, DocStringExtensions, Downloads, FillArrays, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, Future, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, MacroTools, Markdown, MozillaCACerts_jll, NetworkOptions, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, Pkg, Preferences, Printf, Reexport, Serialization, SparseArrays, SpecialFunctions, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 11 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3124.2 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 1 dependency successfully precompiled in 3 seconds. 20 already precompiled. 20 dependencies precompiled but different versions are currently loaded (ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, Compat, Compat → CompatLinearAlgebraExt, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, Future, MacroTools, OrderedCollections, Polynomials, Printf, Serialization, Setfield, SparseArrays, StaticArraysCore, SuiteSparse_jll, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3933.3 ms ✓ Polynomials → PolynomialsRecipesBaseExt 1 dependency successfully precompiled in 4 seconds. 18 already precompiled. 18 dependencies precompiled but different versions are currently loaded (ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, Future, MacroTools, OrderedCollections, Polynomials, PrecompileTools, Preferences, Printf, RecipesBase, Serialization, Setfield, SparseArrays, StaticArraysCore, SuiteSparse_jll, TOML and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 5122.9 ms ✓ Polynomials → PolynomialsMutableArithmeticsExt 1 dependency successfully precompiled in 6 seconds. 19 already precompiled. 19 dependencies precompiled but different versions are currently loaded (Base64, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Future, InteractiveUtils, JuliaSyntaxHighlighting, Logging, MacroTools, Markdown, MutableArithmetics, OrderedCollections, Polynomials, Serialization, Setfield, SparseArrays, StaticArraysCore, StyledStrings, SuiteSparse_jll and Test). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4867.9 ms ✓ DSP → OffsetArraysExt 1 dependency successfully precompiled in 7 seconds. 60 already precompiled. 56 dependencies precompiled but different versions are currently loaded (AbstractFFTs, ArgTools, Base64, Bessels, CompilerSupportLibraries_jll, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, DSP, Dates, DocStringExtensions, Downloads, FFTW, FFTW_jll, Future, IrrationalConstants, IterTools, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, MacroTools, Markdown, MozillaCACerts_jll, NetworkOptions, OffsetArrays, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, Pkg, Polynomials, Polynomials → PolynomialsFFTWExt, Preferences, Printf, Reexport, Serialization, Setfield, SparseArrays, SpecialFunctions, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 5960.1 ms ✓ ToeplitzMatrices → ToeplitzMatricesStatsBaseExt 1 dependency successfully precompiled in 8 seconds. 72 already precompiled. 68 dependencies precompiled but different versions are currently loaded (AbstractFFTs, ArgTools, Base64, Bessels, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, DSP, DataAPI, DataStructures, Dates, DocStringExtensions, Downloads, FFTW, FFTW_jll, FillArrays, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, Future, InteractiveUtils, IrrationalConstants, IterTools, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, MacroTools, Markdown, Missings, MozillaCACerts_jll, NetworkOptions, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, Pkg, Polynomials, Polynomials → PolynomialsFFTWExt, Preferences, Printf, Reexport, Serialization, Setfield, SortingAlgorithms, SparseArrays, SpecialFunctions, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StyledStrings, SuiteSparse_jll, TOML, Tar, ToeplitzMatrices, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. 251.427514 seconds (108.56 M allocations: 5.729 GiB, 1.86% gc time, 99.41% compilation time) Test Summary: | Pass Total Time fixed knockoffs | 10213 10213 4m22.2s 26.288340 seconds (6.38 M allocations: 503.836 MiB, 0.72% gc time, 44.65% compilation time) Test Summary: | Pass Total Time model X Guassian Knockoffs | 4 4 28.8s 19.287932 seconds (3.62 M allocations: 366.135 MiB, 6.41% gc time, 42.26% compilation time) Test Summary: | Pass Total Time model X 2nd order Knockoffs | 3 3 19.3s Test Summary: | Pass Total Time utility functions | 247546 247546 18.7s Test Summary: | Pass Total Time Symbol and string inputs agree | 15 15 2m25.0s Test Summary: | Pass Total Time MK_statistics | 16 16 3.8s Test Summary: | Pass Total Time multiple knockoff q-values | 7 7 5.0s Test Summary: | Pass Total Time q-value selection matches standard selection on simulated data | 11 11 6.1s Test Summary: | Pass Total Time select_groups returns group labels and member indices | 13 13 20.0s Test Summary: | Pass Total Time Markov chain knockoffs have the right correlation structure | 55 55 25.9s Test Summary: | Pass Total Time MVR identity covariance | 9 9 0.5s 57.088179 seconds (650.01 k allocations: 589.433 MiB, 4.97% gc time) 0.119363 seconds (108 allocations: 15.382 MiB) 0.137503 seconds (114 allocations: 15.387 MiB) 3.713732 seconds (634.81 k allocations: 83.005 MiB, 0.60% gc time, 34.78% compilation time) 3.244432 seconds (1.18 k allocations: 49.561 MiB) 3.178520 seconds (1.18 k allocations: 49.561 MiB, 0.55% gc time) Test Summary: | Pass Total Time SDP vs MVR vs ME knockoffs | 2 2 1m10.7s 67.823863 seconds (661.22 k allocations: 586.995 MiB, 2.02% gc time) 0.845204 seconds (80 allocations: 10.467 MiB) Test Summary: | Pass Total Time SDP vs SDP fast | 1 1 1m09.4s 1.048557 seconds (276.07 k allocations: 25.430 MiB, 47.99% compilation time) 1.381390 seconds (85 allocations: 10.468 MiB) Test Summary: | Pass Total Time keyword arguments | 1 1 2.4s 0.579371 seconds (108 allocations: 42.420 MiB) 5.550312 seconds (1.18 k allocations: 125.228 MiB) 6.963854 seconds (636.90 k allocations: 159.730 MiB, 2.28% gc time, 18.15% compilation time) Test Summary: | Pass Total Time debiasing preserves sparsity pattern | 5 5 26.0s ┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead. │ caller = ip:0x0 └ @ Core :-1 Approximating covariance by blocks... 33%|████▋ | ETA: 0:00:03 Approximating covariance by blocks... 67%|█████████▍ | ETA: 0:00:02 Approximating covariance by blocks... 100%|██████████████| Time: 0:00:04 26.671386 seconds (13.35 M allocations: 1.177 GiB, 5.71% gc time, 80.03% compilation time: 18% of which was recompilation) 0.305439 seconds (2.10 k allocations: 43.050 MiB, 5.12% gc time, 6.14% compilation time) 0.355593 seconds (3.19 k allocations: 54.172 MiB, 3.54% gc time, 4.80% compilation time) Test Summary: | Pass Total Time approximate constructions | 4 4 27.7s norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 0.7044388571689835 norm(β̂ - b) = 0.879750303505637 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 0.7044387294061174 norm(β̂ - b) = 0.9607680773846126 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.7919251278577844 norm(β̂ - b) = 1.0183935821402585 norm(β̂ - b) = 1.019309911295841 Test Summary: | Total Time fit lasso Gaussian | 0 1.9s norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 0.4880027600182147 norm(β̂ - b) = 0.6228446256183272 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.6046122369956328 norm(β̂ - b) = 1.5990540493936085 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.898369367937291 norm(β̂ - b) = 1.662231193450143 norm(β̂ - b) = 1.6604119549015366 norm(β̂ - b) = 1.6604633394479436 Test Summary: | Total Time fit lasso logistic | 0 59.5s Test Summary: | Pass Total Time predict via knockoff-filter | 15 15 2.8s 0.035499 seconds (797 allocations: 9.949 MiB, 61.97% compilation time) SDP initial obj = 2.600000000000002 Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 2 (PCA): obj = 0.0076425694218480575, δ = 0.1049513868593349, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = 0.0034459041620199357, δ = 0.012891029698779576, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 4 (PCA): obj = 0.002468051757417651, δ = 0.004615087855127155, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 5 (PCA): obj = 0.0017054405081494684, δ = 0.00934076126679786, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 6 (PCA): obj = 0.0012815483847531087, δ = 0.0036136772135410087, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 7 (PCA): obj = 0.0009487836727680071, δ = 0.0020343293010157046, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 8 (PCA): obj = 0.000730738543804908, δ = 0.0014838583134576626, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 9 (PCA): obj = 0.0006182524210547019, δ = 0.0006769799569998174, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 10 (PCA): obj = 0.000558175587766423, δ = 0.0006571834545315721, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 11 (PCA): obj = 0.0005253955252115187, δ = 0.0002733251270502751, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 12 (PCA): obj = 0.0005011821332138296, δ = 0.00017258408984083783, t1 = 0.01, t2 = 0.0, t3 = 0.02 Iter 13 (PCA): obj = 0.0005003029756800681, δ = 0.00012494593920418898, t1 = 0.01, t2 = 0.0, t3 = 0.02 11.126746 seconds (2.61 M allocations: 145.215 MiB, 99.57% compilation time) SDP initial obj = 2.600000000000002 Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 2 (PCA): obj = 0.007642569421848044, δ = 0.1049513868593349, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = 0.003445904162019915, δ = 0.012891029698779576, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 4 (PCA): obj = 0.002468051757417631, δ = 0.004615087855127155, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 5 (PCA): obj = 0.0017054405081494545, δ = 0.00934076126679786, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 6 (PCA): obj = 0.0012815483847530853, δ = 0.0036136772135410087, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 7 (PCA): obj = 0.0009487836727679915, δ = 0.0020343293010157046, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 8 (PCA): obj = 0.0007307385438048969, δ = 0.0014838583134576626, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 9 (PCA): obj = 0.0006182524210546915, δ = 0.0006769799569998174, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 10 (PCA): obj = 0.0005581755877664172, δ = 0.0006571834545315721, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 11 (CCD): obj = 2.084040498699191e-15, δ = 0.0012531657723307554, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 12 (CCD): obj = 2.084040498699191e-15, δ = 0.0, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 13 (PCA): obj = 0.00012393119554853323, δ = 9.45712295155215e-5, t1 = 0.01, t2 = 0.01, t3 = 0.01 Iter 14 (CCD): obj = 2.0637767177437896e-15, δ = 4.6788636386851934e-5, t1 = 0.01, t2 = 0.01, t3 = 0.01 0.159889 seconds (4.70 k allocations: 10.515 MiB, 74.91% gc time) SDP initial obj = 2.600000000000002 Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 2 (CCD): obj = 2.0263912245508265e-15, δ = 0.026246930919087696, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = 0.00012393119554919874, δ = 9.4571229516383e-5, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 4 (CCD): obj = 1.9964477628324397e-15, δ = 4.678863638751807e-5, t1 = 0.0, t2 = 0.0, t3 = 0.0 0.020047 seconds (2.33 k allocations: 10.349 MiB) MVR initial obj = 3627.758405239078 Iter 1 (PCA): obj = 2134.3338341797335, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = 2134.232587701349, δ = 0.064365048700893, t1 = 0.0, t2 = 0.0 2.048458 seconds (563.40 k allocations: 39.137 MiB, 99.22% compilation time) MVR initial obj = 3627.758405239078 Iter 1 (PCA): obj = 2134.3338341797335, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = 2134.232587701349, δ = 0.064365048700893, t1 = 0.0, t2 = 0.0 Iter 3 (CCD): obj = 2134.2325877012863, δ = 2.3275091878961352e-7, t1 = 0.0, t2 = 0.0,t3 = 0.0 0.017990 seconds (1.45 k allocations: 10.430 MiB) MVR initial obj = 3627.758405239078 Iter 1 (PCA): obj = 2134.3338341797335, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0 Iter 2 (CCD): obj = 2134.3244105744884, δ = 0.0011116260339162362, t1 = 0.0, t2 = 0.0,t3 = 0.0 Iter 3 (PCA): obj = 2134.2327037668074, δ = 0.061319793151697825, t1 = 0.0, t2 = 0.0 Iter 4 (CCD): obj = 2134.232651949957, δ = 0.00012568491784442073, t1 = 0.0, t2 = 0.01,t3 = 0.0 0.020768 seconds (1.73 k allocations: 10.448 MiB) Maxent initial obj = -257.9275190821772 Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = -153.24879130720362, δ = 0.06018956607736612, t1 = 0.0, t2 = 0.0 1.822216 seconds (400.31 k allocations: 30.751 MiB, 99.20% compilation time) Maxent initial obj = -257.9275190821772 Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = -153.24879130720362, δ = 0.06018956607736612, t1 = 0.0, t2 = 0.0 Iter 3 (CCD): obj = -153.2487895675824, δ = 0.00010284693384665026, t1 = 0.0, t2 = 0.0, t3 = 0.0 0.071806 seconds (1.41 k allocations: 10.302 MiB, 78.49% gc time) Maxent initial obj = -257.9275190821772 Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0 Iter 2 (CCD): obj = -153.26564804055067, δ = 0.003144588665808597, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = -153.24886074953, δ = 0.05119933659455436, t1 = 0.0, t2 = 0.0 Iter 4 (CCD): obj = -153.24880953840918, δ = 0.0006013379878981288, t1 = 0.0, t2 = 0.0, t3 = 0.0 0.016926 seconds (1.68 k allocations: 10.320 MiB) Init obj = 2.600000000000002, with 10 unique blocks to optimze Iter 1: obj = 8.919890248648698e-10, δ = 0.49999999995124533 Iter 2: obj = 1.1205977035189106e-9, δ = 6.37674912873365e-10 24.781847 seconds (11.21 M allocations: 623.473 MiB, 0.76% gc time, 98.46% compilation time) Init obj = 3627.758405239078, with 10 unique blocks to optimze Iter 1: obj = 2142.75974279265, δ = 0.37461340651873676 Iter 2: obj = 2144.2482482254486, δ = 0.016373124329110977 Iter 3: obj = 2144.2045854596145, δ = 0.0007073154070162957 31.364116 seconds (11.23 M allocations: 826.391 MiB, 0.87% gc time, 65.02% compilation time) Init obj = -257.9275110097214, with 10 unique blocks to optimze Iter 1: obj = -225.339281616171, δ = 0.06336395732286204 Iter 2: obj = -225.37376197742003, δ = 0.0004947416200552501 16.969603 seconds (9.15 M allocations: 490.025 MiB, 0.57% gc time, 96.90% compilation time) 0.117712 seconds (35.35 k allocations: 12.507 MiB, 19.00% compilation time) 1.081346 seconds (97.67 k allocations: 46.440 MiB, 7.55% gc time, 1.97% compilation time) Test Summary: | Pass Total Time group knockoff optimization | 3558 3558 1m33.3s 1.799051 seconds (1.78 M allocations: 94.409 MiB, 3.80% gc time, 98.80% compilation time) Test Summary: | Pass Total Time block descent for a single block | 2 2 10.1s Test Summary: | Pass Total Time group knockoff utilities | 7 7 5.0s Test Summary: | Pass Total Time representative group knockoffs | 19 19 13.0s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 171 running 1 of 1 signal (10): User defined signal 1 dtrsm_RN_solve_opt at /opt/julia/bin/../lib/julia/libopenblas64_.so (unknown line) dtrsm_kernel_RN_ZEN at /opt/julia/bin/../lib/julia/libopenblas64_.so (unknown line) dtrsm_RNUN at /opt/julia/bin/../lib/julia/libopenblas64_.so (unknown line) dtrsm_64_ at /opt/julia/bin/../lib/julia/libopenblas64_.so (unknown line) trsm! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/blas.jl:2220 generic_mattridiv! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/triangular.jl:1280 [inlined] _rdiv! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/triangular.jl:1173 [inlined] rdiv! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/triangular.jl:1185 unknown function (ip: 0x7124d0582ab6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 sqrt_hess_prod! at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Cones/possemideftri.jl:168 unknown function (ip: 0x7124d057d3d1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 update_lhs_fact at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/systemsolvers/qrchol.jl:238 update_lhs at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/systemsolvers/qrchol.jl:196 unknown function (ip: 0x7124d0577789) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 macro expansion at ./timing.jl:461 [inlined] step at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:71 step_and_check at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/Solvers.jl:612 solve at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/Solvers.jl:373 optimize! at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/MathOptInterface/wrapper.jl:228 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/iaRBO/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/iaRBO/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7124d09d4fd2) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 optimize! at /home/pkgeval/.julia/packages/MathOptInterface/iaRBO/src/Bridges/bridge_optimizer.jl:367 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/iaRBO/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/iaRBO/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7124d0934312) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/EHXNP/src/optimizer_interface.jl:610 optimize! at /home/pkgeval/.julia/packages/JuMP/EHXNP/src/optimizer_interface.jl:560 [inlined] #solve_SDP#23 at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/src/utilities.jl:82 solve_SDP at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/src/utilities.jl:70 [inlined] #solve_s#19 at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/src/utilities.jl:38 solve_s at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/src/utilities.jl:27 [inlined] #modelX_gaussian_knockoffs#3 at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/src/modelX.jl:62 [inlined] modelX_gaussian_knockoffs at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/src/modelX.jl:53 unknown function (ip: 0x7124cf97b873) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 macro expansion at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/test/runtests.jl:1007 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] top-level scope at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/test/runtests.jl:994 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x712510230249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x734329981633) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x73432997848c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x73432996cc59) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x73432996c891) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x73432996a260) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x734329961bbf) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x734344270249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007343299fc010 Total snapshots: 403. Utilization: 0% ╎403 @Base/client.jl:550 _start() ╎ 403 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 403 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 403 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 403 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 403 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 403 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 403 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 403 @Pkg/src/API.jl:157 test ╎ ╎ 403 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 403 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 403 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 403 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 403 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 403 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 403 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 403 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 403 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 403 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 403 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 403 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 403 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 403 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 403 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 403 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 403 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 403 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 403 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 403 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 403 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 403 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 403 @Base/…sk.jl:1228 wait() 402╎ ╎ ╎ ╎ ╎ ╎ ╎ 403 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 25180073 (Pool: 25179381; Big: 692); GC: 25 [171] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Knockoffs/ROZEa/test/runtests.jl:993 dgemm_kernel_ZEN at /opt/julia/bin/../lib/julia/libopenblas64_.so (unknown line) unknown function (ip: (nil)) at (unknown file) Allocations: 336681128 (Pool: 336637116; Big: 44012); GC: 150 PkgEval terminated after 2723.29s: test duration exceeded the time limit