Package evaluation to test HiddenMarkovModels on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T14:36:55.197 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.08s ################################################################################ # Installation # Installing HiddenMarkovModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [84ca31d5] + HiddenMarkovModels v0.7.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.26.1 [34da2185] + Compat v4.18.1 [b429d917] + DensityInterface v0.4.0 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [84ca31d5] + HiddenMarkovModels v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [276daf66] + SpecialFunctions v2.8.0 [82ae8749] + StatsAPI v1.8.0 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1016.9 ms ✓ StructUtils → StructUtilsTablesExt 8285.0 ms ✓ StatsBase 17226.4 ms ✓ HiddenMarkovModels 84177.8 ms ✓ Zygote 33486.9 ms ✓ QuadGK → QuadGKEnzymeExt 2335.9 ms ✓ PDMats → StatsBaseExt 115308.7 ms ✓ ComponentArrays → ComponentArraysZygoteExt 10882.1 ms ✓ Distributions 3656.4 ms ✓ Distributions → DistributionsDensityInterfaceExt 4296.4 ms ✓ Distributions → DistributionsTestExt 6984.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 34597.0 ms ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 12 dependencies successfully precompiled in 327 seconds. 182 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 101 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 344.77s ################################################################################ # Testing # Testing HiddenMarkovModels Status `/tmp/jl_zqvpdM/Project.toml` [4c88cf16] Aqua v0.8.16 [b0b7db55] ComponentArrays v0.15.39 [b429d917] DensityInterface v0.4.0 [31c24e10] Distributions v0.25.127 [e30172f5] Documenter v1.17.0 [7da242da] Enzyme v0.13.162 [f6369f11] ForwardDiff v1.4.1 [84ca31d5] HiddenMarkovModels v0.7.0 [c3a54625] JET v0.11.4 [98e50ef6] JuliaFormatter v2.9.0 [aa2f6b4e] LogarithmicNumbers v1.4.1 [eff96d63] Measurements v2.14.1 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [e88e6eb3] Zygote v0.7.11 [37e2e46d] LinearAlgebra v1.12.0 [44cfe95a] Pkg v1.12.1 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zqvpdM/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.25.0 [fa961155] CEnum v0.5.0 [49dc2e85] Calculus v0.5.2 [082447d4] ChainRules v1.73.0 [d360d2e6] ChainRulesCore v1.26.1 [da1fd8a2] CodeTracking v3.0.2 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v1.0.2 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [b0b7db55] ComponentArrays v0.15.39 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 ⌃ [864edb3b] DataStructures v0.12.0 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [7da242da] Enzyme v0.13.162 [f151be2c] EnzymeCore v0.8.20 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [f6369f11] ForwardDiff v1.4.1 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.22.1 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.5.0 [84ca31d5] HiddenMarkovModels v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [7869d1d1] IRTools v0.4.17 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.11.4 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [98e50ef6] JuliaFormatter v2.9.0 [aa1ae85d] JuliaInterpreter v0.10.12 [70703baa] JuliaSyntax v1.0.2 [929cbde3] LLVM v9.9.0 [0e77f7df] LazilyInitializedFields v1.3.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 ⌅ [6f1432cf] LoweredCodeUtils v3.5.3 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.4 [d8793406] ObjectFile v0.5.0 [bac558e1] OrderedCollections v2.0.0 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [295af30f] Revise v3.15.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 ⌅ [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.3 [53d494c1] StructIO v0.3.1 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 ⌃ [bd369af6] Tables v1.6.1 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [e88e6eb3] Zygote v0.7.11 [700de1a5] ZygoteRules v0.2.7 ⌅ [7cc45869] Enzyme_jll v0.0.269+0 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [dad2f222] LLVMExtra_jll v0.0.43+1 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 15901.9 ms ✓ HiddenMarkovModels 1 dependency successfully precompiled in 17 seconds. 46 already precompiled. 16 dependencies precompiled but different versions are currently loaded (Base64, Dates, DocStringExtensions, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, Logging, Markdown, Preferences, Printf, Serialization, StyledStrings, TOML, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 22 dependents of these packages may trigger further precompilation to work with the unexpected versions. Resolving package versions... Updating `/tmp/jl_zqvpdM/Project.toml` [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` Updating `/tmp/jl_zqvpdM/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.8.0 [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` [9abbd945] + Profile v1.11.0 Code formatting: Test Failed at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:21 Expression: JuliaFormatter.format(HiddenMarkovModels; verbose = false, overwrite = false) Stacktrace: [1] top-level scope @ ~/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:18 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:20 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:21 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] Precompiling packages... 6769.1 ms ✓ StatsBase 2863.4 ms ✓ PDMats → StatsBaseExt 8502.4 ms ✓ Distributions 3655.1 ms ✓ Distributions → DistributionsTestExt 4 dependencies successfully precompiled in 23 seconds. 44 already precompiled. 31 dependencies precompiled but different versions are currently loaded (Base64, CompilerSupportLibraries_jll, Dates, DocStringExtensions, FillArrays, FillArrays → FillArraysSparseArraysExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Logging, Markdown, OpenLibm_jll, OpenSpecFun_jll, Preferences, Printf, Reexport, Rmath, Rmath_jll, Serialization, SparseArrays, SpecialFunctions, StatsAPI, StatsFuns, StyledStrings, SuiteSparse_jll, TOML, Test and Unicode). Restart julia to access the new versions. Otherwise, 12 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3308.4 ms ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 2992.4 ms ✓ Distributions → DistributionsDensityInterfaceExt 5704.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 3 dependencies successfully precompiled in 13 seconds. 64 already precompiled. 63 dependencies precompiled but different versions are currently loaded (AliasTables, ArgCheck, Base64, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, DensityInterface, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HiddenMarkovModels, HypergeometricFunctions, InteractiveUtils, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, InverseFunctions → InverseFunctionsTestExt, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, LogExpFunctions → LogExpFunctionsInverseFunctionsExt, Logging, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, PDMats, PDMats → StatsBaseExt, Preferences, Printf, PtrArrays, QuadGK, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsFuns → StatsFunsChainRulesCoreExt, StatsFuns → StatsFunsInverseFunctionsExt, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 4 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 8409.1 ms ✓ ForwardDiff 74704.3 ms ✓ Zygote 2 dependencies successfully precompiled in 84 seconds. 66 already precompiled. 39 dependencies precompiled but different versions are currently loaded (Base64, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, DataAPI, Dates, DocStringExtensions, FillArrays, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, Logging, MacroTools, Markdown, OpenLibm_jll, OpenSpecFun_jll, PrecompileTools, Preferences, Printf, Serialization, SparseArrays, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 18 dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: `target_defined_modules::Bool` configuration is deprecated. │ Please use `target_modules` instead and specify the modules you want to target with e.g. `target_modules=(pkgmod,)` └ @ JET ~/.julia/packages/JET/Nf2tu/src/analyzers/jetanalyzer.jl:1678 Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/Nf2tu/src/JETBase.jl:1400 Expression: (JET.report_package)(HiddenMarkovModels; toplevel_logger = nothing, target_defined_modules = true) ═════ 3 possible errors found ═════ ┌ valid_dists(d::AbstractVector) @ HiddenMarkovModels /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/valid.jl:11 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %21 if not (HiddenMarkovModels.DensityKind((d::AbstractVector)[i]::Any)::Any HiddenMarkovModels.:(==) HiddenMarkovModels.NoDensity()::DensityInterface.NoDensity)::Union{Missing, Bool} └──────────────────── ┌ valid_dists(d::AbstractVector) @ HiddenMarkovModels /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/valid.jl:11 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %21 if not (HiddenMarkovModels.DensityKind((d::AbstractVector)[i::Any]::Any)::Any HiddenMarkovModels.:(==) HiddenMarkovModels.NoDensity()::DensityInterface.NoDensity)::Union{Missing, Bool} └──────────────────── ┌ valid_hmm(hmm::AbstractHMM, control::Any) @ HiddenMarkovModels /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/valid.jl:31 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %55 if not HiddenMarkovModels.:!(HiddenMarkovModels.valid_trans_mat(trans::AbstractMatrix)::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── Precompiling packages... 2359.9 ms ✓ ComponentArrays 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. 14 dependencies precompiled but different versions are currently loaded (Adapt, ChainRulesCore, Compat, Compat → CompatLinearAlgebraExt, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, PrecompileTools, Preferences, Printf, StaticArraysCore, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1987.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 2 seconds. 45 already precompiled. 45 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceChainRulesCoreExt, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, Base64, ChainRules, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, Compat, Compat → CompatLinearAlgebraExt, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, DataAPI, DataValueInterfaces, Dates, Distributed, GPUArraysCore, InteractiveUtils, IrrationalConstants, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, Logging, Markdown, Printf, RealDot, Serialization, SparseArrays, SparseInverseSubset, Statistics, Statistics → SparseArraysExt, StructArrays, StructArrays → StructArraysAdaptExt, StructArrays → StructArraysLinearAlgebraExt, StructArrays → StructArraysSparseArraysExt, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 5402.6 ms ✓ ComponentArrays → ComponentArraysZygoteExt 1 dependency successfully precompiled in 6 seconds. 81 already precompiled. 81 dependencies precompiled but different versions are currently loaded (AbstractFFTs, AbstractFFTs → AbstractFFTsChainRulesCoreExt, AbstractFFTs → AbstractFFTsTestExt, Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceChainRulesCoreExt, ArrayInterface → ArrayInterfaceChainRulesExt, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, Base64, ChainRules, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, CommonSubexpressions, CommonWorldInvalidations, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ComponentArrays, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, DataAPI, DataValueInterfaces, Dates, DiffResults, DiffRules, Distributed, DocStringExtensions, FillArrays, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, ForwardDiff, Functors, GPUArraysCore, IRTools, IfElse, InteractiveUtils, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, Logging, MacroTools, Markdown, NaNMath, OpenLibm_jll, OpenSpecFun_jll, PrecompileTools, Preferences, Printf, RealDot, SciMLPublic, Serialization, SparseArrays, SparseInverseSubset, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, Static, StaticArrayInterface, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StructArrays, StructArrays → StructArraysAdaptExt, StructArrays → StructArraysLinearAlgebraExt, StructArrays → StructArraysSparseArraysExt, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Test, UUIDs, Unicode, Zygote and ZygoteRules). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 115257.9 ms ✓ Enzyme 1 dependency successfully precompiled in 116 seconds. 47 already precompiled. 34 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CompilerSupportLibraries_jll, Dates, Downloads, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Serialization, SparseArrays, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 10 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 21840.1 ms ✓ QuadGK → QuadGKEnzymeExt 1 dependency successfully precompiled in 22 seconds. 51 already precompiled. 49 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, DataStructures, Dates, Downloads, Enzyme, EnzymeCore, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, QuadGK, Reexport, Scratch, Serialization, SparseArrays, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, Test, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 21841.5 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 1 dependency successfully precompiled in 22 seconds. 51 already precompiled. 49 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, Dates, DocStringExtensions, Downloads, Enzyme, EnzymeCore, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 22107.1 ms ✓ Enzyme → EnzymeChainRulesCoreExt 1 dependency successfully precompiled in 23 seconds. 53 already precompiled. 51 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CEnum, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, Enzyme, EnzymeCore, EnzymeCore → EnzymeCoreChainRulesCoreExt, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 22034.7 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 1 dependency successfully precompiled in 22 seconds. 55 already precompiled. 53 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, Dates, DocStringExtensions, Downloads, Enzyme, Enzyme → EnzymeLogExpFunctionsExt, EnzymeCore, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, SpecialFunctions, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 20291.6 ms ✓ Enzyme → EnzymeGPUArraysCoreExt 1 dependency successfully precompiled in 21 seconds. 52 already precompiled. 50 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, Dates, Downloads, Enzyme, EnzymeCore, EnzymeCore → AdaptExt, Enzyme_jll, ExprTools, GPUArraysCore, GPUCompiler, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 8839.3 ms ✓ BenchmarkTools 10038.6 ms ✓ HMMTest 2 dependencies successfully precompiled in 19 seconds. 82 already precompiled. 81 dependencies precompiled but different versions are currently loaded (ArgCheck, ArgTools, Base64, CRC32c, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, CodeTracking, Compat, Compat → CompatLinearAlgebraExt, Compiler, CompilerSupportLibraries_jll, Dates, DensityInterface, DocStringExtensions, Downloads, FillArrays, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HiddenMarkovModels, HypergeometricFunctions, InteractiveUtils, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, InverseFunctions → InverseFunctionsTestExt, IrrationalConstants, JET, JLLWrappers, JSON, JuliaInterpreter, JuliaSyntax, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, LogExpFunctions → LogExpFunctionsInverseFunctionsExt, Logging, LoweredCodeUtils, MacroTools, Markdown, MozillaCACerts_jll, NetworkOptions, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, Parsers, Pkg, Pkg → REPLExt, PrecompileTools, Preferences, Printf, REPL, Reexport, Revise, Rmath, Rmath_jll, Serialization, SparseArrays, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsFuns, StatsFuns → StatsFunsChainRulesCoreExt, StatsFuns → StatsFunsInverseFunctionsExt, StructUtils, StyledStrings, SuiteSparse_jll, TOML, Tar, Test, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Unbound or partitioned GlobalRef not allowed in value position Internal error: during type inference of _pullback(Zygote.Context{false}, Main.var"#25#26", ComponentArrays.ComponentArray{Float64, 1, Array{Float64, 1}, Tuple{ComponentArrays.Axis{(init=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=1, stop=2), nothing, ComponentArrays.Shaped1DAxis{(2,)}}(ax=ComponentArrays.Shaped1DAxis{(2,)}()), trans=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=3, stop=6), nothing, ComponentArrays.ShapedAxis{(2, 2)}}(ax=ComponentArrays.ShapedAxis{(2, 2)}()), means=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=7, stop=8), nothing, ComponentArrays.Shaped1DAxis{(2,)}}(ax=ComponentArrays.Shaped1DAxis{(2,)}()))}}}, Array{Float64, 1}, Array{Float64, 1}) Encountered unexpected error in runtime: ErrorException("IR verification failed.\n Code location: /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:137\n Method instance: MethodInstance for ZygoteRules._pullback(::Zygote.Context{false}, ::var\"#25#26\", ::ComponentVector{Float64, Vector{Float64}, Tuple{Axis{(init = ViewAxis(1:2, Shaped1DAxis((2,))), trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = ViewAxis(7:8, Shaped1DAxis((2,))))}}}, ::Vector{Float64}, ::Vector{Float64})") error at ./error.jl:54 unknown function (ip: 0x7ecb23f311ea) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invokelatest at /source/src/builtins.c:881 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 raise_error at ./../usr/share/julia/Compiler/src/ssair/verify.jl:125 jfptr_raise_error_18716.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 check_op at ./../usr/share/julia/Compiler/src/ssair/verify.jl:71 verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:429 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1043 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_82569.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_80505.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4588 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/Pm9ID/src/compiler/interface.jl:99 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/Pm9ID/src/compiler/interface.jl:97 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 gradient at /home/pkgeval/.julia/packages/Zygote/Pm9ID/src/compiler/interface.jl:156 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:136 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:18 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at none:6 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ecb5b7ca249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S [135] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:136 unknown function (ip: 0x7ecb5b82debc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_type_infer at /source/src/gf.c:485 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/Pm9ID/src/compiler/interface.jl:99 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/Pm9ID/src/compiler/interface.jl:97 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 gradient at /home/pkgeval/.julia/packages/Zygote/Pm9ID/src/compiler/interface.jl:156 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ecb5b7ca249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 228463294 (Pool: 228460701; Big: 2593); GC: 82 Testing failed after 778.79s ERROR: LoadError: Package HiddenMarkovModels errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 1171.15s: an internal error was encountered