Package evaluation to test HDF5 on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T16:23:17.330 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.33s ################################################################################ # Installation # Installing HDF5... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [f67ccb44] + HDF5 v0.17.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [34da2185] + Compat v4.18.1 [f67ccb44] + HDF5 v0.17.3 [692b3bcd] + JLLWrappers v1.8.0 [3da0fdf6] + MPIPreferences v0.1.12 [21216c6a] + Preferences v1.5.2 [ae029012] + Requires v1.3.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.7+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.6+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 28.25s ################################################################################ # Testing # Testing HDF5 Status `/tmp/jl_ftXJOr/Project.toml` [34da2185] Compat v4.18.1 [5789e2e9] FileIO v1.19.0 [f67ccb44] HDF5 v0.17.3 [da04e1cc] MPI v0.20.26 [3da0fdf6] MPIPreferences v0.1.12 [bac558e1] OrderedCollections v2.0.0 [21216c6a] Preferences v1.5.2 [ae029012] Requires v1.3.1 [0234f1f7] HDF5_jll v2.1.2+0 [8bf52ea8] CRC32c v1.11.0 [8ba89e20] Distributed v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 Status `/tmp/jl_ftXJOr/Manifest.toml` [34da2185] Compat v4.18.1 [ffbed154] DocStringExtensions v0.9.5 [5789e2e9] FileIO v1.19.0 [f67ccb44] HDF5 v0.17.3 [692b3bcd] JLLWrappers v1.8.0 [da04e1cc] MPI v0.20.26 [3da0fdf6] MPIPreferences v0.1.12 [bac558e1] OrderedCollections v2.0.0 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [ae029012] Requires v1.3.1 [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.14.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.11+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.7+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Resolving package versions... Updating `/tmp/jl_ftXJOr/Project.toml` [c8ec2601] + H5Zblosc v0.1.2 `~/.julia/packages/HDF5/8g5ny/filters/H5Zblosc` [094576f2] + H5Zbzip2 v0.1.2 `~/.julia/packages/HDF5/8g5ny/filters/H5Zbzip2` [eb20ec05] + H5Zlz4 v0.1.1 `~/.julia/packages/HDF5/8g5ny/filters/H5Zlz4` [f6f2d980] + H5Zzstd v0.1.1 `~/.julia/packages/HDF5/8g5ny/filters/H5Zzstd` Updating `/tmp/jl_ftXJOr/Manifest.toml` [a74b3585] + Blosc v0.7.3 ⌅ [fa961155] + CEnum v0.4.2 [523fee87] + CodecBzip2 v0.8.5 [5ba52731] + CodecLz4 v0.4.6 ⌅ [6b39b394] + CodecZstd v0.7.2 [c8ec2601] + H5Zblosc v0.1.2 `~/.julia/packages/HDF5/8g5ny/filters/H5Zblosc` [094576f2] + H5Zbzip2 v0.1.2 `~/.julia/packages/HDF5/8g5ny/filters/H5Zbzip2` [eb20ec05] + H5Zlz4 v0.1.1 `~/.julia/packages/HDF5/8g5ny/filters/H5Zlz4` [f6f2d980] + H5Zzstd v0.1.1 `~/.julia/packages/HDF5/8g5ny/filters/H5Zzstd` ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_ftXJOr/Project.toml` [51b4e782] + H5Zbitshuffle v0.1.3 `~/.julia/packages/HDF5/8g5ny/filters/H5Zbitshuffle` Updating `/tmp/jl_ftXJOr/Manifest.toml` [51b4e782] + H5Zbitshuffle v0.1.3 `~/.julia/packages/HDF5/8g5ny/filters/H5Zbitshuffle` [228fe19c] + bitshuffle_jll v0.5.2+0 [ Info: libhdf5 v2.1.1 Precompiling packages... 5889.9 ms ✓ H5Zblosc 1 dependency successfully precompiled in 6 seconds. 62 already precompiled. 50 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, HDF5, HDF5_jll, Hwloc_jll, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Preferences, Printf, Requires, StyledStrings, TOML, Tar, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 12 dependents of these packages may trigger further precompilation to work with the unexpected versions. :h5p_set_obj_track_times = :h5p_set_obj_track_times track_times = false :h5p_set_obj_track_times = :h5p_set_obj_track_times track_times = false :h5p_set_obj_track_times = :h5p_set_obj_track_times track_times = false Precompiling packages... 2965.9 ms ✓ CodecLz4 3428.5 ms ✓ H5Zlz4 2 dependencies successfully precompiled in 7 seconds. 63 already precompiled. 54 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, HDF5, HDF5_jll, Hwloc_jll, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, Lz4_jll, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Preferences, Printf, Requires, Serialization, StyledStrings, TOML, Tar, Test, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 10 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1792.6 ms ✓ CodecBzip2 3233.4 ms ✓ H5Zbzip2 2 dependencies successfully precompiled in 5 seconds. 63 already precompiled. 54 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, HDF5, HDF5_jll, Hwloc_jll, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Preferences, Printf, Requires, Serialization, StyledStrings, TOML, Tar, Test, TranscodingStreams, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 10 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 2831.0 ms ✓ CodecZstd 3035.1 ms ✓ H5Zzstd 2 dependencies successfully precompiled in 6 seconds. 64 already precompiled. 55 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, HDF5, HDF5_jll, Hwloc_jll, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Preferences, Printf, Requires, Serialization, StyledStrings, TOML, Tar, Test, TranscodingStreams, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, Zstd_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 9 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1466.4 ms ✓ bitshuffle_jll 2385.5 ms ✓ H5Zbitshuffle 2 dependencies successfully precompiled in 4 seconds. 60 already precompiled. 52 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, HDF5, HDF5_jll, Hwloc_jll, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, Lz4_jll, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Preferences, Printf, Requires, StyledStrings, TOML, Tar, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, Zstd_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 9 dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: `filter=(307, 0)` keyword option is deprecated, use `filters=(307, 0)` instead │ caller = setproperty!(p::HDF5.DatasetCreateProperties, name::Symbol, val::Tuple{Int32, Int64}) at properties.jl:59 └ @ Core ~/.julia/packages/HDF5/8g5ny/src/properties.jl:59 ┌ Warning: `append!(filters::Filters.FilterPipeline, extra::NTuple{N, Integer}) where N` is deprecated, use `append!(filters, [ExternalFilter(extra...)])` instead. │ caller = set_filters! at properties.jl:499 [inlined] └ @ Core ~/.julia/packages/HDF5/8g5ny/src/properties.jl:499 Precompiling packages... 13874.2 ms ✓ MPI 1 dependency successfully precompiled in 14 seconds. 44 already precompiled. 35 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CompilerSupportLibraries_jll, Dates, Distributed, Downloads, Hwloc_jll, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, MPICH_jll, MPIPreferences, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Preferences, Printf, Serialization, StyledStrings, TOML, Tar, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 8 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 6654.8 ms ✓ HDF5 → MPIExt 1 dependency successfully precompiled in 8 seconds. 64 already precompiled. 56 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Distributed, DocStringExtensions, Downloads, HDF5, HDF5_jll, Hwloc_jll, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, MPI, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, PkgVersion, PrecompileTools, Preferences, Printf, Requires, Serialization, StyledStrings, TOML, Tar, UUIDs, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 8 dependents of these packages may trigger further precompilation to work with the unexpected versions. Test Summary: | Pass Broken Total Time HDF5.jl | 1561 4 1565 6m11.8s Testing HDF5 tests passed Testing completed after 423.04s PkgEval succeeded after 501.67s