Package evaluation to test GraphNeuralNetworks on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T00:22:18.260


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.35s


################################################################################
# Installation
#

Installing GraphNeuralNetworks...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [cffab07f] + GraphNeuralNetworks v1.1.0
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [47edcb42] + ADTypes v1.22.0
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.6.1
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [a9b6321e] + Atomix v1.1.3
  [fa961155] + CEnum v0.5.0
  [082447d4] + ChainRules v1.73.0
  [d360d2e6] + ChainRulesCore v1.26.1
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [2569d6c7] + ConcreteStructs v0.2.4
  [187b0558] + ConstructionBase v1.6.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.5
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.16.0
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.5
  [f151be2c] + EnzymeCore v0.8.20
  [1a297f60] + FillArrays v1.16.0
  [587475ba] + Flux v0.16.10
  [f6369f11] + ForwardDiff v1.4.1
  [d9f16b24] + Functors v0.5.2
  [aed8fd31] + GNNGraphs v1.5.0
  [a6a84749] + GNNlib v1.2.1
  [0c68f7d7] + GPUArrays v11.5.8
  [46192b85] + GPUArraysCore v0.2.0
  [cffab07f] + GraphNeuralNetworks v1.1.0
  [86223c79] + Graphs v1.14.0
  [076d061b] + HashArrayMappedTries v0.2.0
  [7869d1d1] + IRTools v0.4.17
  [d25df0c9] + Inflate v0.1.5
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.8.0
  [63c18a36] + KernelAbstractions v0.9.41
⌅ [0b1a1467] + KrylovKit v0.9.5
  [929cbde3] + LLVM v9.9.0
  [2ab3a3ac] + LogExpFunctions v1.0.1
  [c2834f40] + MLCore v1.0.2
  [7e8f7934] + MLDataDevices v1.17.10
  [f1d291b0] + MLUtils v0.4.9
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
  [872c559c] + NNlib v0.9.36
  [77ba4419] + NaNMath v1.1.4
  [b8a86587] + NearestNeighbors v0.4.27
  [0b1bfda6] + OneHotArrays v0.2.11
  [3bd65402] + Optimisers v0.4.7
⌅ [bac558e1] + OrderedCollections v1.8.2
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [33c8b6b6] + ProgressLogging v0.1.6
  [43287f4e] + PtrArrays v1.4.0
  [c1ae055f] + RealDot v0.1.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [431bcebd] + SciMLPublic v1.0.1
  [7e506255] + ScopedValues v1.6.2
  [efcf1570] + Setfield v1.1.2
  [605ecd9f] + ShowCases v0.1.0
  [699a6c99] + SimpleTraits v0.9.6
  [a2af1166] + SortingAlgorithms v1.2.2
  [dc90abb0] + SparseInverseSubset v0.1.2
  [276daf66] + SpecialFunctions v2.8.0
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.12
  [09ab397b] + StructArrays v0.7.3
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [013be700] + UnsafeAtomics v0.3.1
⌅ [409d34a3] + VectorInterface v0.5.0
  [e88e6eb3] + Zygote v0.7.11
  [700de1a5] + ZygoteRules v0.2.7
  [dad2f222] + LLVMExtra_jll v0.0.43+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.1
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+0
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.6+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.77s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78
┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    expected package `GNNGraphs [aed8fd31]` to exist at path `/home/pkgeval/.julia/packages/GraphNeuralNetworks/GNNGraphs`
│    Stacktrace:
│      [1] pkgerror(msg::String)
│        @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
│      [2] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber)
│        @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:449
│      [3] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool)
│        @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:528
│      [4] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
│        @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2000
│      [5] up
│        @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1977 [inlined]
│      [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull})
│        @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:450
│      [7] up
│        @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:419 [inlined]
│      [8] up
│        @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:174 [inlined]
│      [9] #resolve#171
│        @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:456 [inlined]
│     [10] resolve
│        @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:455 [inlined]
│     [11] activate(pkg::String; allow_reresolve::Bool)
│        @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:83
│     [12] activate(pkg::String)
│        @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:9
│     [13] (::var"#10#11")()
│        @ Main /PkgEval.jl/scripts/precompile.jl:21
│     [14] capture_pkg_output(f::var"#10#11"; suppress::Bool)
│        @ Main /PkgEval.jl/scripts/common.jl:55
│     [15] suppress_pkg_output(f::Function)
│        @ Main /PkgEval.jl/scripts/common.jl:35
│     [16] top-level scope
│        @ /PkgEval.jl/scripts/precompile.jl:19
│     [17] include(mod::Module, _path::String)
│        @ Base ./Base.jl:306
│     [18] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:317
│     [19] _start()
│        @ Base ./client.jl:550
└ @ Main /PkgEval.jl/scripts/precompile.jl:24
  Activating project at `~/.julia/environments/v1.12`
Precompiling package dependencies...

Precompilation completed after 20.13s


################################################################################
# Testing
#

     Testing GraphNeuralNetworks

Testing failed after 5.97s

ERROR: LoadError: expected package `GNNlib [a6a84749]` to exist at path `/home/pkgeval/.julia/packages/GraphNeuralNetworks/GNNlib`
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:449
  [3] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:528
  [4] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2000
  [5] up
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1977 [inlined]
  [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:450
  [7] up
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:419 [inlined]
  [8] up
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:174 [inlined]
  [9] #resolve#171
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:456 [inlined]
 [10] resolve
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:455 [inlined]
 [11] (::Pkg.Operations.var"#190#191"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2294
 [12] with_temp_env(fn::Pkg.Operations.var"#190#191"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164
 [13] (::Pkg.Operations.var"#186#187"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278
 [14] mktempdir(fn::Pkg.Operations.var"#186#187"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:936
 [15] mktempdir(fn::Function, parent::String)
    @ Base.Filesystem ./file.jl:932
 [16] #sandbox#182
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined]
 [17] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481
 [18] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined]
 [19] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552
 [20] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
 [21] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
 [22] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
 [23] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
 [24] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [25] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [26] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:317
 [27] _start()
    @ Base ./client.jl:550
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 59.39s: there were unidentified errors