Package evaluation to test GeophysicalModelGenerator on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T08:49:44.254 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.06s ################################################################################ # Installation # Installing GeophysicalModelGenerator... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [3700c31b] + GeophysicalModelGenerator v0.7.21 Updating `~/.julia/environments/v1.12/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.26.1 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [c87230d0] + FFMPEG v0.4.5 [5789e2e9] + FileIO v1.19.0 [1a297f60] + FillArrays v1.16.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [f6369f11] + ForwardDiff v1.4.1 [e018b62d] + GeoParams v0.7.16 [0ef565a4] + Geodesy v1.2.0 [5c1252a2] + GeometryBasics v0.5.11 [3700c31b] + GeophysicalModelGenerator v0.7.21 [c27321d9] + Glob v1.5.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v1.0.0 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 [a98d9a8b] + Interpolations v0.16.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.2 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [4345ca2d] + Loess v0.6.6 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [36869731] + Malt v1.4.1 [dbb5928d] + MappedArrays v0.4.3 [7269a6da] + MeshIO v0.5.3 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.27 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [f57f5aa1] + PNGFiles v0.4.5 [5432bcbf] + PaddedViews v0.5.12 [d3525ed8] + ParallelTestRunner v2.6.2 ⌅ [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [4b34888f] + QOI v1.0.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 ⌅ [f2b01f46] + Roots v2.3.0 [fdea26ae] + SIMD v3.7.2 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.6 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.4.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.9 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.2.0 [1986cc42] + Unitful v1.28.0 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 ⌅ [ea906314] + WhereTheWaterFlows v0.11.1 [efce3f68] + WoodburyMatrices v1.1.0 [64499a7a] + WriteVTK v1.21.2 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.7+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.8.1+0 [b22a6f82] + FFMPEG_jll v8.1.0+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.3+0 [3b182d85] + Graphite2_jll v1.3.16+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.2.2+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.42.0+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.42.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [18a262bb] + OpenEXR_jll v3.4.12+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.6.1+0 [30392449] + Pixman_jll v0.46.4+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.3+0 [ffd25f8a] + XZ_jll v5.8.3+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [a4ae2306] + libaom_jll v3.13.3+0 [0ac62f75] + libass_jll v0.17.4+0 [8e53e030] + libdrm_jll v2.4.125+1 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.58+0 [075b6546] + libsixel_jll v1.10.5+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... ✗ libgeotiff_jll 15946.7 ms ✓ Chmy 19900.5 ms ✓ NCDatasets 28816.0 ms ✓ PartitionedArrays ✗ GDAL_jll 74334.5 ms ? GeophysicalModelGenerator → Chmy_utils 37682.2 ms ✓ NCDatasets → NCDatasetsMPIExt 196459.2 ms ✓ GeophysicalModelGenerator → NCDatasets_utils 45192.8 ms ✓ GridapDistributed ✗ GMT_jll 36500.3 ms ✓ GridapGmsh ✗ GMT 217358.3 ms ✓ GeophysicalModelGenerator → Gmsh_utils ✗ GMT → GMTParkerFFTExt ✗ GeophysicalModelGenerator → GMT_utils 8 dependencies successfully precompiled in 783 seconds. 399 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 274 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ GeophysicalModelGenerator → Chmy_utils │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Chmy │ WARNING: Constructor for type "Tuple" was extended in `GridOperators` without explicit qualification or import. │ NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Tuple end`. │ Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. └ ERROR: LoadError: The following 3 direct dependencies failed to precompile: GMT → GMTParkerFFTExt Failed to precompile GMTParkerFFTExt [35a23bc9-6f20-5cbc-8971-9cdf66427582] to "/home/pkgeval/.julia/compiled/v1.12/GMTParkerFFTExt/jl_KMiMOi". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/3a09b7a113789836af0106fa82e16f7b97bf806b/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/PROJ_jll/4AOHV/src/wrappers/x86_64-linux-gnu-cxx11.jl:75 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [10] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] include(mod::Module, _path::String) @ Base ./Base.jl:306 [18] top-level scope @ ~/.julia/packages/JLLWrappers/Kp7TC/src/toplevel_generators.jl:202 [19] include(mod::Module, _path::String) @ Base ./Base.jl:306 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [24] include_string @ ./loading.jl:2883 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [26] _start() @ Base ./client.jl:550 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/GMT_jll.jl:2 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.12/GMT_jll/jl_yrE7w8". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/GMT/iSqsn/src/GMT.jl:47 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/GMT/iSqsn/src/GMT.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.12/GMT/jl_gfOter". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/GMT/iSqsn/ext/GMTParkerFFTExt/GMTParkerFFTExt.jl:2 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/GMT/iSqsn/ext/GMTParkerFFTExt/GMTParkerFFTExt.jl:1 in expression starting at stdin:5 GMT Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.12/GMT/jl_3VoT6H". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/3a09b7a113789836af0106fa82e16f7b97bf806b/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/PROJ_jll/4AOHV/src/wrappers/x86_64-linux-gnu-cxx11.jl:75 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [10] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] include(mod::Module, _path::String) @ Base ./Base.jl:306 [18] top-level scope @ ~/.julia/packages/JLLWrappers/Kp7TC/src/toplevel_generators.jl:202 [19] include(mod::Module, _path::String) @ Base ./Base.jl:306 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [24] include_string @ ./loading.jl:2883 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [26] _start() @ Base ./client.jl:550 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/GMT_jll.jl:2 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.12/GMT_jll/jl_TJUBBL". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/GMT/iSqsn/src/GMT.jl:47 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/GMT/iSqsn/src/GMT.jl:1 in expression starting at stdin:5 GeophysicalModelGenerator → GMT_utils Failed to precompile GMT_utils [20136216-f3a3-54f4-8003-01a59bbc487c] to "/home/pkgeval/.julia/compiled/v1.12/GMT_utils/jl_dvqhWs". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/3a09b7a113789836af0106fa82e16f7b97bf806b/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/PROJ_jll/4AOHV/src/wrappers/x86_64-linux-gnu-cxx11.jl:75 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [10] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] include(mod::Module, _path::String) @ Base ./Base.jl:306 [18] top-level scope @ ~/.julia/packages/JLLWrappers/Kp7TC/src/toplevel_generators.jl:202 [19] include(mod::Module, _path::String) @ Base ./Base.jl:306 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [24] include_string @ ./loading.jl:2883 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [26] _start() @ Base ./client.jl:550 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/GMT_jll.jl:2 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.12/GMT_jll/jl_J1ZAmy". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/GMT/iSqsn/src/GMT.jl:47 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/GMT/iSqsn/src/GMT.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.12/GMT/jl_8KonTE". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/GeophysicalModelGenerator/fTdK3/ext/GMT_utils.jl:10 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/fTdK3/ext/GMT_utils.jl:2 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 832.73s ################################################################################ # Testing # Testing GeophysicalModelGenerator Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_RJ3aN1/Project.toml` [33a72cf0] + Chmy v0.1.26 [5752ebe1] + GMT v1.41.0 [3700c31b] + GeophysicalModelGenerator v0.7.21 ⌅ [3025c34a] + GridapGmsh v0.7.3 [63c18a36] + KernelAbstractions v0.9.41 [85f8d34a] + NCDatasets v0.14.15 [860ef19b] + StableRNGs v1.0.4 Updating `/tmp/jl_RJ3aN1/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [621f4979] + AbstractFFTs v1.5.0 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.25.0 [4c555306] + ArrayLayouts v1.12.2 [a9b6321e] + Atomix v1.1.3 [15f4f7f2] + AutoHashEquals v2.2.0 [fbb218c0] + BSON v0.3.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [179af706] + CFTime v0.2.10 [2a0fbf3d] + CPUSummary v0.2.7 [33a72cf0] + Chmy v0.1.26 [7a955b69] + CircularArrays v1.5.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.1.0 [1fbeeb36] + CommonDataModel v0.4.3 [adafc99b] + CpuId v0.3.1 [e2d170a0] + DataValueInterfaces v1.0.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [3c3547ce] + DiskArrays v0.4.21 [7a1cc6ca] + FFTW v1.10.0 [442a2c76] + FastGaussQuadrature v1.3.0 [6a86dc24] + FiniteDiff v2.31.0 [5752ebe1] + GMT v1.41.0 [a0844989] + Gamma v1.0.2 [3700c31b] + GeophysicalModelGenerator v0.7.21 [86223c79] + Graphs v1.14.0 ⌅ [56d4f2e9] + Gridap v0.19.11 ⌃ [f9701e48] + GridapDistributed v0.4.13 ⌅ [3025c34a] + GridapGmsh v0.7.3 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [682c06a0] + JSON v1.6.1 [63c18a36] + KernelAbstractions v0.9.41 [8ac3fa9e] + LRUCache v1.6.2 [10f19ff3] + LayoutPointers v0.1.17 ⌃ [d3d80556] + LineSearches v7.5.1 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [d125e4d3] + ManualMemory v0.1.8 [2679e427] + Metis v1.5.0 [85f8d34a] + NCDatasets v0.14.15 ⌅ [d41bc354] + NLSolversBase v7.10.0 [2774e3e8] + NLsolve v4.5.1 [69de0a69] + Parsers v2.8.6 ⌅ [5a9dfac6] + PartitionedArrays v0.3.5 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [c74db56a] + PolynomialBases v0.4.28 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [94e857df] + SIMDTypes v0.1.0 [ce78b400] + SimpleUnPack v1.1.0 [a0a7dd2c] + SparseMatricesCSR v0.6.12 [860ef19b] + StableRNGs v1.0.4 [0d7ed370] + StaticArrayInterface v1.10.0 [7792a7ef] + StrideArraysCore v0.5.9 [ec057cc2] + StructUtils v2.8.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.6 [013be700] + UnsafeAtomics v0.3.1 ⌅ [8ce61222] + Arrow_jll v19.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [f5851436] + FFTW_jll v3.3.12+0 [4fce6fc7] + FLTK_jll v1.3.8+0 ⌅ [a7073274] + GDAL_jll v303.1100.500+0 [d604d12d] + GEOS_jll v3.14.1+0 [bd17208b] + GLU_jll v9.0.1+0 ⌃ [b68b8c3f] + GMT_jll v6.6.0+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [818ab7a1] + HDF4_jll v4.3.2+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [a51ab1cf] + ICU_jll v76.2.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [17f450c3] + LAPACK32_jll v3.12.1+1 [8372b9c3] + LASzip_jll v3.4.4001+0 [6a1430e4] + Leptonica_jll v1.87.0+0 [08be9ffa] + LibPQ_jll v16.14.0+0 [18c40d15] + LinearElasticity_jll v5.0.0+0 [d3a379c0] + LittleCMS_jll v2.19.1+0 [5ced341a] + Lz4_jll v1.10.1+0 [d00139f3] + METIS_jll v5.1.3+0 [856f044c] + MKL_jll v2025.2.0+0 [86086c02] + MMG_jll v5.6.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌃ [7243133f] + NetCDF_jll v401.900.300+0 [baad4e97] + OCCT_jll v7.9.3+0 [656ef2d0] + OpenBLAS32_jll v0.3.33+1 [643b3616] + OpenJpeg_jll v2.5.5+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 [2f80f16e] + PCRE_jll v8.45.1+0 [58948b4f] + PROJ_jll v902.800.100+0 [784f63db] + Qhull_jll v10008.0.1004+0 ⌅ [a8d0f55d] + SCOTCH_jll v6.1.3+0 [76ed43ae] + SQLite_jll v3.53.2+0 [e0b8ae26] + Thrift_jll v0.21.1+0 ⌅ [02c8fc9c] ↓ XML2_jll v2.15.3+0 ⇒ v2.13.9+0 [2c808117] + Xorg_libXft_jll v2.3.9+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [28df3c45] + boost_jll v1.87.0+0 [4611771a] + brotli_jll v1.2.0+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 ⌃ [630162c2] + gmsh_jll v4.15.0+0 [477f73a3] + libaec_jll v1.1.7+0 [06c338fa] + libgeotiff_jll v100.702.400+0 [337d8026] + libzip_jll v1.11.3+0 [888e69b1] + muparser_jll v2.3.5+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [fe1e1685] + snappy_jll v1.2.3+0 [4af54fe1] + LazyArtifacts v1.11.0 [4607b0f0] + SuiteSparse [781609d7] + GMP_jll v6.3.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_RJ3aN1/Project.toml` [33a72cf0] Chmy v0.1.26 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [c87230d0] FFMPEG v0.4.5 [5789e2e9] FileIO v1.19.0 [5752ebe1] GMT v1.41.0 [e018b62d] GeoParams v0.7.16 [0ef565a4] Geodesy v1.2.0 [5c1252a2] GeometryBasics v0.5.11 [3700c31b] GeophysicalModelGenerator v0.7.21 [c27321d9] Glob v1.5.0 ⌅ [3025c34a] GridapGmsh v0.7.3 [82e4d734] ImageIO v0.6.9 [a98d9a8b] Interpolations v0.16.3 [033835bb] JLD2 v0.6.4 [63c18a36] KernelAbstractions v0.9.41 [9c8b4983] LightXML v0.9.3 [7269a6da] MeshIO v0.5.3 [85f8d34a] NCDatasets v0.14.15 [b8a86587] NearestNeighbors v0.4.27 [d3525ed8] ParallelTestRunner v2.6.2 ⌅ [d96e819e] Parameters v0.12.3 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 ⌅ [ea906314] WhereTheWaterFlows v0.11.1 [64499a7a] WriteVTK v1.21.2 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_RJ3aN1/Manifest.toml` [47edcb42] ADTypes v1.22.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.25.0 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.3 [15f4f7f2] AutoHashEquals v2.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [fbb218c0] BSON v0.3.9 [7b0aa2c9] BibTeX v0.1.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.10 [2a0fbf3d] CPUSummary v0.2.7 [d360d2e6] ChainRulesCore v1.26.1 [33a72cf0] Chmy v0.1.26 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [7a955b69] CircularArrays v1.5.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Running 26 tests using 1 parallel jobs. If this is too many concurrent jobs, specify the `--jobs=N` argument to the tests, or set the `JULIA_CPU_THREADS` environment variable. │ Test │ ──────────────── CPU ──────────────── │ Test (Worker) │ time (s) │ GC (s) │ GC % │ Alloc (MB) │ RSS (MB) │ test_paraview (1) │ 85.58 │ 2.20 │ 2.6 │ 1397.03 │ 773.33 │ test_nearest_points (1) │ 15.62 │ 0.07 │ 0.4 │ 274.07 │ 821.68 │ test_paraview_collection (1) │ 1.94 │ 0.00 │ 0.0 │ 87.83 │ 821.68 │ test_utils (1) │ 320.86 │ 3.09 │ 1.0 │ 4662.67 │ 950.38 │ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 425 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 wait at ./asyncevent.jl:202 [inlined] sleep at ./asyncevent.jl:312 [inlined] #50 at /home/pkgeval/.julia/packages/ParallelTestRunner/kZFbj/src/ParallelTestRunner.jl:1128 unknown function (ip: 0x7899eaf3f39c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x72adbd77e613) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x72adbd77300c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x72adbd76d7d9) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x72adbd76d411) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x72adbd768af0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x72adbd761d5f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x72add9c2c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000072adbf3fc010 Total snapshots: 79. Utilization: 0% ╎79 @Base/client.jl:550 _start() ╎ 79 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 79 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 79 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _path:… ╎ 79 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mod:… ╎ 79 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 79 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 79 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 79 @Pkg/src/API.jl:157 test ╎ ╎ 79 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.Pai… ╎ ╎ 79 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 79 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOCon… ╎ ╎ ╎ 79 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 79 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 79 @Pkg/…perations.jl:2387 test ╎ ╎ ╎ 79 @Pkg/…perations.jl:2481 test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 79 @Pkg/…erations.jl:2215 kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 79 @Pkg/…erations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 79 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 79 @Base/file.jl:932 mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 79 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 79 @Pkg/…ations.jl:2278 (::Pkg.Operations.var"#186#187… ╎ ╎ ╎ ╎ ╎ 79 @Pkg/…ations.jl:2164 with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 79 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#19… ╎ ╎ ╎ ╎ ╎ 79 @Base/env.jl:265 withenv(::Pkg.Operations.var"#2… ╎ ╎ ╎ ╎ ╎ 79 @Pkg/…tions.jl:2496 (::Pkg.Operations.var"#205#… ╎ ╎ ╎ ╎ ╎ ╎ 79 @Pkg/…ions.jl:2556 subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 79 @Base/…ess.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 79 @Base/…ess.jl:693 wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 79 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 79 @Base/…on.jl:141 wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 79 @Base/…sk.jl:1228 wait() 78╎ ╎ ╎ ╎ ╎ ╎ ╎ 79 @Base/…sk.jl:1216 poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 30969818 (Pool: 30968986; Big: 832); GC: 27 [425] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/fTdK3/test/runtests.jl:16 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_op.cc:50 _ZNSt8_Rb_treeIN4llvm8RegisterES1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE16_M_insert_uniqueIRKS1_EESt4pairISt17_Rb_tree_iteratorIS1_EbEOT_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _Z19addRegAndItsAliasesIN4llvm8SmallSetINS0_8RegisterELj4ESt4lessIS2_EEEEvS2_PKNS0_18TargetRegisterInfoERT_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm12BranchFolder22HoistCommonCodeInSuccsEPNS_17MachineBasicBlockE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm12BranchFolder15HoistCommonCodeERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm12BranchFolder16OptimizeFunctionERNS_15MachineFunctionEPKNS_15TargetInstrInfoEPKNS_18TargetRegisterInfoEPNS_15MachineLoopInfoEb.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_116BranchFolderPass20runOnMachineFunctionERN4llvm15MachineFunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1561 addModule at /source/src/jitlayers.cpp:2044 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invokelatest at /source/src/builtins.c:881 profile_printing_listener at ./Base.jl:334 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 20928766 (Pool: 20928417; Big: 349); GC: 15 PkgEval terminated after 2740.02s: test duration exceeded the time limit