Package evaluation to test GeometricMedicalPhantoms on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T13:55:22.870 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.42s ################################################################################ # Installation # Installing GeometricMedicalPhantoms... Resolving package versions... Installed SIMDTypes ──────────────────────── v0.1.0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed Adapt ──────────────────────────── v4.6.1 Installed CPUSummary ─────────────────────── v0.2.7 Installed ThreadingUtilities ─────────────── v0.5.6 Installed Compat ─────────────────────────── v4.18.1 Installed Static ─────────────────────────── v1.4.0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed IfElse ─────────────────────────── v0.1.1 Installed ManualMemory ───────────────────── v0.1.8 Installed PolyesterWeave ─────────────────── v0.2.2 Installed SciMLPublic ────────────────────── v1.0.1 Installed CpuId ──────────────────────────── v0.3.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed StrideArraysCore ───────────────── v0.5.9 Installed StaticArrayInterface ───────────── v1.10.0 Installed ArrayInterface ─────────────────── v7.25.0 Installed Preferences ────────────────────── v1.5.2 Installed GeometricMedicalPhantoms ───────── v1.0.3 Installed Polyester ──────────────────────── v0.7.19 Installed PrecompileTools ────────────────── v1.3.4 Updating `~/.julia/environments/v1.12/Project.toml` [c297bd51] + GeometricMedicalPhantoms v1.0.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.6.1 [4fba245c] + ArrayInterface v7.25.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [c297bd51] + GeometricMedicalPhantoms v1.0.3 [615f187c] + IfElse v0.1.1 [10f19ff3] + LayoutPointers v0.1.17 [d125e4d3] + ManualMemory v0.1.8 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [94e857df] + SIMDTypes v0.1.0 [431bcebd] + SciMLPublic v1.0.1 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [7792a7ef] + StrideArraysCore v0.5.9 [8290d209] + ThreadingUtilities v0.5.6 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 6.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4036.9 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 1029.8 ms ✓ Compiler 4056.2 ms ✓ OrderedCollections 744.7 ms ✓ SIMDTypes 1190.3 ms ✓ DocStringExtensions 1122.1 ms ✓ Statistics 35701.8 ms ✓ JuliaSyntax 726.5 ms ✓ IfElse 5147.2 ms ✓ IrrationalConstants 892.9 ms ✓ Adapt 772.8 ms ✓ CommonWorldInvalidations 7582.9 ms ✓ MacroTools 892.3 ms ✓ SciMLPublic 930.5 ms ✓ ManualMemory 1962.0 ms ✓ CpuId 4035.7 ms ✓ Compat 1151.4 ms ✓ Preferences 2373.1 ms ✓ CodeTracking 865.4 ms ✓ LazyGrids 1369.3 ms ✓ LogExpFunctions 3961.4 ms ✓ ArrayInterface 4908.3 ms ✓ ThreadingUtilities 892.6 ms ✓ Compat → CompatLinearAlgebraExt 1054.5 ms ✓ PrecompileTools 1356.3 ms ✓ JLLWrappers 13031.1 ms ✓ JuliaInterpreter 6866.9 ms ✓ Aqua 4637.3 ms ✓ Static 1406.9 ms ✓ OpenSpecFun_jll 21907.3 ms ✓ LoweredCodeUtils 853.1 ms ✓ BitTwiddlingConvenienceFunctions 2499.3 ms ✓ CPUSummary 9201.6 ms ✓ StaticArrayInterface 5826.7 ms ✓ SpecialFunctions 15201.2 ms ✓ Revise 1782.7 ms ✓ PolyesterWeave 1101.4 ms ✓ CloseOpenIntervals 1286.2 ms ✓ LayoutPointers 1738.3 ms ✓ ImagePhantoms 123938.5 ms ✓ JET 2007.2 ms ✓ StrideArraysCore 2321.2 ms ✓ Polyester 62195.2 ms ✓ GeometricMedicalPhantoms 42 dependencies successfully precompiled in 363 seconds. 33 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 29 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 390.19s ################################################################################ # Testing # Testing GeometricMedicalPhantoms Status `/tmp/jl_j8kjsP/Project.toml` [4c88cf16] Aqua v0.8.16 [c297bd51] GeometricMedicalPhantoms v1.0.3 [71a99df6] ImagePhantoms v0.8.1 [c3a54625] JET v0.11.4 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_j8kjsP/Manifest.toml` [79e6a3ab] Adapt v4.6.1 [4c88cf16] Aqua v0.8.16 [4fba245c] ArrayInterface v7.25.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.2 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [adafc99b] CpuId v0.3.1 [ffbed154] DocStringExtensions v0.9.5 [c297bd51] GeometricMedicalPhantoms v1.0.3 [615f187c] IfElse v0.1.1 [71a99df6] ImagePhantoms v0.8.1 [92d709cd] IrrationalConstants v0.2.6 [c3a54625] JET v0.11.4 [692b3bcd] JLLWrappers v1.8.0 [aa1ae85d] JuliaInterpreter v0.10.12 [70703baa] JuliaSyntax v1.0.2 [10f19ff3] LayoutPointers v0.1.17 [7031d0ef] LazyGrids v1.1.0 [2ab3a3ac] LogExpFunctions v1.0.1 ⌅ [6f1432cf] LoweredCodeUtils v3.5.3 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bac558e1] OrderedCollections v2.0.0 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [295af30f] Revise v3.15.1 [94e857df] SIMDTypes v0.1.0 [431bcebd] SciMLPublic v1.0.1 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [10745b16] Statistics v1.11.1 [7792a7ef] StrideArraysCore v0.5.9 [8290d209] ThreadingUtilities v0.5.6 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... JET static analysis: JET-test failed at /home/pkgeval/.julia/packages/JET/Nf2tu/src/JETBase.jl:1400 Expression: (JET.report_package)(GeometricMedicalPhantoms; toplevel_logger = nothing, target_modules = (GeometricMedicalPhantoms,)) ═════ 3 possible errors found ═════ ┌ get_rotation_matrix(phi::Any, theta::Any, psi::Any, plane::Any) @ GeometricMedicalPhantoms /home/pkgeval/.julia/packages/GeometricMedicalPhantoms/hqlSm/src/geometries/rotated_ellipsoid.jl:69 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %96 if not (plane::Any GeometricMedicalPhantoms.:(==) :axial)::Union{Missing, Bool} └──────────────────── ┌ get_rotation_matrix(phi::Any, theta::Any, psi::Any, plane::Any) @ GeometricMedicalPhantoms /home/pkgeval/.julia/packages/GeometricMedicalPhantoms/hqlSm/src/geometries/rotated_ellipsoid.jl:72 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %110 if not (plane::Any GeometricMedicalPhantoms.:(==) :coronal)::Union{Missing, Bool} └──────────────────── ┌ get_rotation_matrix(phi::Any, theta::Any, psi::Any, plane::Any) @ GeometricMedicalPhantoms /home/pkgeval/.julia/packages/GeometricMedicalPhantoms/hqlSm/src/geometries/rotated_ellipsoid.jl:75 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %124 if not (plane::Any GeometricMedicalPhantoms.:(==) :sagittal)::Union{Missing, Bool} └──────────────────── Test Summary: | Pass Fail Total Time GeometricMedicalPhantoms.jl | 471 1 472 11m14.0s Cylinder Tests | 42 42 7.2s SuperEllipsoid Tests | 6 6 0.9s RotatedEllipsoid Tests | 21 21 9.7s Shepp-Logan Phantom | 18 18 15.9s Tubes Phantom | 45 45 11.6s generate_respiratory_signal | 31 31 5.7s generate_cardiac_signals | 45 45 33.4s 2D Phantom Tests | 118 118 2m38.2s 3D Phantom Tests | 114 114 1m36.5s Aqua | 11 11 1m00.2s JET static analysis | 20 1 21 3m53.2s @test_opt | 10 10 1m27.6s @test_call | 10 10 13.0s RNG of the outermost testset: Random.Xoshiro(0xb6f32b2f3c882bad, 0x154081f38035cf41, 0x0289d70660c8c2ef, 0xc50973d02977a886, 0x66a80edac35b03c5) ERROR: LoadError: Some tests did not pass: 471 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GeometricMedicalPhantoms/hqlSm/test/runtests.jl:3 Testing failed after 688.59s ERROR: LoadError: Package GeometricMedicalPhantoms errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1112.28s: package has test failures