Package evaluation to test GenerativeTopographicMapping on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T01:08:08.495 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 10.05s ################################################################################ # Installation # Installing GenerativeTopographicMapping... Resolving package versions... Installed GPUArraysCore ──────────────── v0.2.0 Installed Crayons ────────────────────── v4.1.1 Installed MLCore ─────────────────────── v1.0.2 Installed Calculus ───────────────────── v0.5.2 Installed ScientificTypesBase ────────── v3.1.0 Installed Adapt ──────────────────────── v4.6.1 Installed IrrationalConstants ────────── v0.2.6 Installed ColorTypes ─────────────────── v0.12.1 Installed ShowCases ──────────────────── v0.1.0 Installed CategoricalDistributions ───── v0.2.2 Installed StatisticalMeasuresBase ────── v0.1.4 Installed MLJModelInterface ──────────── v1.12.1 Installed Arpack_jll ─────────────────── v3.5.2+0 Installed Rmath ──────────────────────── v0.9.0 Installed HypergeometricFunctions ────── v0.3.28 Installed StatsFuns ──────────────────── v2.2.0 Installed TableTraits ────────────────── v1.0.1 Installed PtrArrays ──────────────────── v1.4.0 Installed StatisticalTraits ──────────── v3.5.0 Installed Preferences ────────────────── v1.5.2 Installed SpecialFunctions ───────────── v2.8.0 Installed CategoricalArrays ──────────── v1.1.1 Installed Tables ─────────────────────── v1.12.1 Installed HashArrayMappedTries ───────── v0.2.0 Installed DataAPI ────────────────────── v1.16.0 Installed PDMats ─────────────────────── v0.11.37 Installed PrettyTables ───────────────── v3.3.2 Installed NNlib ──────────────────────── v0.9.36 Installed FixedPointNumbers ──────────── v0.8.6 Installed RecipesBase ────────────────── v1.3.4 Installed ScientificTypes ────────────── v3.3.0 Installed LearnAPI ───────────────────── v2.0.1 Installed JLLWrappers ────────────────── v1.8.0 Installed ProgressMeter ──────────────── v1.11.0 Installed Measurements ───────────────── v2.14.1 Installed StaticArraysCore ───────────── v1.4.4 Installed MLJBase ────────────────────── v1.13.1 Installed IteratorInterfaceExtensions ── v1.0.0 Installed StaticArrays ───────────────── v1.9.18 Installed PrecompileTools ────────────── v1.3.4 Installed DataValueInterfaces ────────── v1.0.0 Installed OrderedCollections ─────────── v1.8.2 Installed LaTeXStrings ───────────────── v1.4.0 Installed Arpack ─────────────────────── v0.5.4 Installed DelimitedFiles ─────────────── v1.9.1 Installed Combinatorics ──────────────── v1.1.0 Installed InvertedIndices ────────────── v1.3.1 Installed FillArrays ─────────────────── v1.16.0 Installed ScopedValues ───────────────── v1.6.2 Installed Rmath_jll ──────────────────── v0.5.1+0 Installed Reexport ───────────────────── v1.2.2 Installed Statistics ─────────────────── v1.11.1 Installed ChainRulesCore ─────────────── v1.26.1 Installed LogExpFunctions ────────────── v0.3.29 Installed QuadGK ─────────────────────── v2.11.3 Installed DataStructures ─────────────── v0.19.5 Installed ComputationalResources ─────── v0.3.2 Installed AliasTables ────────────────── v1.1.3 Installed StatsAPI ───────────────────── v1.8.0 Installed MLUtils ────────────────────── v0.4.9 Installed Requires ───────────────────── v1.3.1 Installed Compat ─────────────────────── v4.18.1 Installed MacroTools ─────────────────── v0.5.16 Installed OpenSpecFun_jll ────────────── v0.5.6+0 Installed UnPack ─────────────────────── v1.0.2 Installed KernelAbstractions ─────────── v0.9.41 Installed Distributions ──────────────── v0.25.127 Installed Parameters ─────────────────── v0.13.1 Installed SimpleTraits ───────────────── v0.9.6 Installed Distances ──────────────────── v0.10.12 Installed UnsafeAtomics ──────────────── v0.3.1 Installed StringManipulation ─────────── v0.4.4 Installed StatsBase ──────────────────── v0.34.12 Installed Missings ───────────────────── v1.2.0 Installed SortingAlgorithms ──────────── v1.2.2 Installed MultivariateStats ──────────── v0.10.4 Installed DocStringExtensions ────────── v0.9.5 Installed Atomix ─────────────────────── v1.1.3 Installed GenerativeTopographicMapping ─ v0.7.10 Installing 3 artifacts Installed artifact Arpack 138.3 KiB Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [110c1e60] + GenerativeTopographicMapping v0.7.10 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] + Atomix v1.1.3 [49dc2e85] + Calculus v0.5.2 [324d7699] + CategoricalArrays v1.1.1 [af321ab8] + CategoricalDistributions v0.2.2 [d360d2e6] + ChainRulesCore v1.26.1 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [46192b85] + GPUArraysCore v0.2.0 [110c1e60] + GenerativeTopographicMapping v0.7.10 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v2.0.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.2 [a7f614a8] + MLJBase v1.13.1 [e80e1ace] + MLJModelInterface v1.12.1 [f1d291b0] + MLUtils v0.4.9 [1914dd2f] + MacroTools v0.5.16 [eff96d63] + Measurements v2.14.1 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.4 [872c559c] + NNlib v0.9.36 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.13.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.3.0 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [c062fc1d] + StatisticalMeasuresBase v0.1.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5338.7 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 2637.4 ms ✓ Combinatorics 1376.5 ms ✓ Calculus 5704.7 ms ✓ PrettyPrinting 862.1 ms ✓ LaTeXStrings 736.9 ms ✓ IteratorInterfaceExtensions 4261.1 ms ✓ UnsafeAtomics 876.7 ms ✓ StatsAPI 789.2 ms ✓ UnPack 1922.6 ms ✓ FillArrays 1101.9 ms ✓ Statistics 3897.8 ms ✓ ShowCases 7669.8 ms ✓ MacroTools 4308.0 ms ✓ OrderedCollections 769.1 ms ✓ DataValueInterfaces 978.4 ms ✓ StableRNGs 778.9 ms ✓ Reexport 1166.0 ms ✓ DocStringExtensions 1170.3 ms ✓ AbstractTrees 5156.6 ms ✓ IrrationalConstants 1277.3 ms ✓ URIs 777.4 ms ✓ SimpleBufferStream 822.3 ms ✓ PtrArrays 1317.8 ms ✓ TranscodingStreams 946.7 ms ✓ HashArrayMappedTries 980.1 ms ✓ DelimitedFiles 863.1 ms ✓ InvertedIndices 916.1 ms ✓ Adapt 836.2 ms ✓ DataAPI 4960.3 ms ✓ Crayons 886.4 ms ✓ BitFlags 1082.1 ms ✓ ComputationalResources 1003.4 ms ✓ StaticArraysCore 1714.0 ms ✓ ConcurrentUtilities 1877.8 ms ✓ PDMats 1176.8 ms ✓ Requires 1944.2 ms ✓ ProgressMeter 2184.0 ms ✓ SentinelArrays 4311.6 ms ✓ StructUtils 925.8 ms ✓ Scratch 1073.8 ms ✓ LoggingExtras 1147.5 ms ✓ Preferences 4009.6 ms ✓ Compat 1422.0 ms ✓ ScientificTypesBase 1629.8 ms ✓ ExceptionUnwrapping 1310.1 ms ✓ Measurements 741.6 ms ✓ TableTraits 988.8 ms ✓ Atomix 1485.5 ms ✓ FillArrays → FillArraysSparseArraysExt 6927.9 ms ✓ FixedPointNumbers 4634.9 ms ✓ Distances 1571.5 ms ✓ Statistics → SparseArraysExt 1307.7 ms ✓ EarlyStopping 980.9 ms ✓ FillArrays → FillArraysStatisticsExt 3150.4 ms ✓ SimpleTraits 3708.8 ms ✓ DataStructures 1013.5 ms ✓ Parameters 1454.3 ms ✓ LogExpFunctions 1028.6 ms ✓ AliasTables 957.2 ms ✓ CodecZlib 910.1 ms ✓ ScopedValues 1367.3 ms ✓ Adapt → AdaptSparseArraysExt 1244.4 ms ✓ GPUArraysCore 3831.9 ms ✓ Missings 4963.3 ms ✓ OpenSSL 1477.1 ms ✓ FillArrays → FillArraysPDMatsExt 946.3 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 1232.4 ms ✓ RelocatableFolders 1438.5 ms ✓ JLLWrappers 1634.8 ms ✓ LearnAPI 1122.3 ms ✓ PrecompileTools 918.5 ms ✓ Compat → CompatLinearAlgebraExt 1431.5 ms ✓ StatisticalTraits 927.9 ms ✓ StructUtils → StructUtilsMeasurementsExt 4645.6 ms ✓ Tables 5458.0 ms ✓ ColorTypes 1429.1 ms ✓ Distances → DistancesSparseArraysExt 3984.8 ms ✓ IterationControl 1122.0 ms ✓ SortingAlgorithms 5207.8 ms ✓ QuadGK 1545.2 ms ✓ Rmath_jll 1425.5 ms ✓ Arpack_jll 1434.6 ms ✓ MbedTLS_jll 1410.6 ms ✓ OpenSpecFun_jll 18354.5 ms ✓ StaticArrays 3253.6 ms ✓ RecipesBase 3780.6 ms ✓ StringManipulation 15950.1 ms ✓ Parsers 5106.1 ms ✓ ChainRulesCore 5892.5 ms ✓ CategoricalArrays 2806.6 ms ✓ MLJModelInterface 1219.7 ms ✓ TableOperations 970.2 ms ✓ StructUtils → StructUtilsTablesExt 3923.9 ms ✓ MLCore 1254.4 ms ✓ ColorTypes → StyledStringsExt 7442.4 ms ✓ StatsBase 1562.1 ms ✓ Rmath 1374.0 ms ✓ Arpack 2269.1 ms ✓ MbedTLS 6120.3 ms ✓ SpecialFunctions 2555.4 ms ✓ BitBasis 1410.3 ms ✓ StaticArrays → StaticArraysStatisticsExt 1516.9 ms ✓ FillArrays → FillArraysStaticArraysExt 1383.6 ms ✓ Adapt → AdaptStaticArraysExt 1305.4 ms ✓ Measurements → MeasurementsRecipesBaseExt 50270.6 ms ✓ PrettyTables 10333.7 ms ✓ JSON 4339.5 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 870.1 ms ✓ Distances → DistancesChainRulesCoreExt 3454.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4420.8 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 5587.8 ms ✓ ARFFFiles 3855.0 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1069.0 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 2730.6 ms ✓ FeatureSelection 2050.5 ms ✓ MLJWrappers 2211.1 ms ✓ LatinHypercubeSampling 1646.8 ms ✓ PDMats → StatsBaseExt 1637.4 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 34541.6 ms ✓ HTTP 4656.6 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2207.6 ms ✓ HypergeometricFunctions 1014.2 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 9805.7 ms ✓ NearestNeighbors 12099.0 ms ✓ KernelAbstractions 1264.7 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 5302.1 ms ✓ StatsFuns 5821.5 ms ✓ NearestNeighborModels 3255.1 ms ✓ KernelAbstractions → SparseArraysExt 2258.3 ms ✓ KernelAbstractions → LinearAlgebraExt 7264.0 ms ✓ OpenML 3800.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9833.1 ms ✓ Distributions 14779.0 ms ✓ NNlib 3414.8 ms ✓ Distributions → DistributionsTestExt 5433.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 8828.3 ms ✓ ScientificTypes 3599.4 ms ✓ MultivariateStats 2719.4 ms ✓ NNlib → NNlibSpecialFunctionsExt 11233.1 ms ✓ MLUtils 12415.0 ms ✓ CategoricalDistributions 14443.0 ms ✓ MLJTransforms 20849.0 ms ✓ StatisticalMeasuresBase 21295.1 ms ✓ MLJModels 47403.0 ms ✓ StatisticalMeasures 16810.8 ms ✓ MLJBase 10252.8 ms ✓ MLJEnsembles ✗ StatisticalMeasures → ScientificTypesExt 11646.4 ms ✓ MLJBalancing 16248.2 ms ✓ MLJTestInterface ✗ MLJBase → DefaultMeasuresExt 12899.8 ms ✓ MLJIteration 11754.0 ms ✓ MLJTuning 12068.0 ms ✓ GenerativeTopographicMapping ✗ MLJ ✗ MLJTestIntegration 151 dependencies successfully precompiled in 772 seconds. 38 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 105 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJBase → DefaultMeasuresExt Failed to precompile DefaultMeasuresExt [fe5f6ac0-33d3-5066-8083-2d519bb7c971] to "/home/pkgeval/.julia/compiled/v1.12/DefaultMeasuresExt/jl_gmgiu2". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] top-level scope @ ~/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:5 [12] include(mod::Module, _path::String) @ Base ./Base.jl:306 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [14] top-level scope @ stdin:5 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string @ ./loading.jl:2883 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [19] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:1 in expression starting at stdin:5 MLJTestIntegration Failed to precompile MLJTestIntegration [697918b4-fdc1-4f9e-8ff9-929724cee270] to "/home/pkgeval/.julia/compiled/v1.12/MLJTestIntegration/jl_YOLAGz". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_NSHDPi". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 806.14s ################################################################################ # Testing # Testing GenerativeTopographicMapping Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_rZkxcp/Project.toml` [110c1e60] + GenerativeTopographicMapping v0.7.10 [697918b4] + MLJTestIntegration v0.5.5 [860ef19b] + StableRNGs v1.0.4 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_rZkxcp/Manifest.toml` [da404889] + ARFFFiles v1.6.0 [1520ce14] + AbstractTrees v0.4.5 [7d9fca2a] + Arpack v0.5.4 [50ba71b6] + BitBasis v0.9.10 [d1d4a3ce] + BitFlags v0.1.10 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [f0e56b4a] + ConcurrentUtilities v2.5.1 [792122b4] + EarlyStopping v0.3.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [33837fe5] + FeatureSelection v0.2.6 [110c1e60] + GenerativeTopographicMapping v0.7.10 ⌅ [cd3eb016] + HTTP v1.11.0 [b3c1a2ee] + IterationControl v0.5.4 [682c06a0] + JSON v1.6.1 [a5e1c1ea] + LatinHypercubeSampling v1.9.0 [e6f89c97] + LoggingExtras v1.2.0 [add582a8] + MLJ v0.23.2 [45f359ea] + MLJBalancing v0.1.6 [50ed68f4] + MLJEnsembles v0.4.5 [614be32b] + MLJIteration v0.6.5 [d491faf4] + MLJModels v0.18.8 [697918b4] + MLJTestIntegration v0.5.5 [72560011] + MLJTestInterface v0.2.9 [23777cdb] + MLJTransforms v0.1.6 [03970b2e] + MLJTuning v0.8.9 [b5d0f7f3] + MLJWrappers v0.1.3 [739be429] + MbedTLS v1.1.10 [6f286f6a] + MultivariateStats v0.10.4 [636a865e] + NearestNeighborModels v0.2.3 [b8a86587] + NearestNeighbors v0.4.27 [8b6db2d4] + OpenML v0.3.3 [4d8831e6] + OpenSSL v1.6.1 ⌅ [d96e819e] ↓ Parameters v0.13.1 ⇒ v0.12.3 [69de0a69] + Parsers v2.8.6 [54e16d92] + PrettyPrinting v0.4.2 [05181044] + RelocatableFolders v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [777ac1f9] + SimpleBufferStream v1.2.0 [860ef19b] + StableRNGs v1.0.4 [a19d573c] + StatisticalMeasures v0.3.6 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.6+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_rZkxcp/Project.toml` [b4f34e82] Distances v0.10.12 [110c1e60] GenerativeTopographicMapping v0.7.10 [a7f614a8] MLJBase v1.13.1 [697918b4] MLJTestIntegration v0.5.5 [860ef19b] StableRNGs v1.0.4 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_rZkxcp/Manifest.toml` [da404889] ARFFFiles v1.6.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [a9b6321e] Atomix v1.1.3 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.10 [49dc2e85] Calculus v0.5.2 [324d7699] CategoricalArrays v1.1.1 [af321ab8] CategoricalDistributions v0.2.2 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [792122b4] EarlyStopping v0.3.0 [460bff9d] ExceptionUnwrapping v0.1.11 [33837fe5] FeatureSelection v0.2.6 [1a297f60] FillArrays v1.16.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [46192b85] GPUArraysCore v0.2.0 [110c1e60] GenerativeTopographicMapping v0.7.10 ⌅ [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [b3c1a2ee] IterationControl v0.5.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [63c18a36] KernelAbstractions v0.9.41 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 [92ad9a40] LearnAPI v2.0.1 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [c2834f40] MLCore v1.0.2 [add582a8] MLJ v0.23.2 [45f359ea] MLJBalancing v0.1.6 [a7f614a8] MLJBase v1.13.1 [50ed68f4] MLJEnsembles v0.4.5 [614be32b] MLJIteration v0.6.5 [e80e1ace] MLJModelInterface v1.12.1 [d491faf4] MLJModels v0.18.8 [697918b4] MLJTestIntegration v0.5.5 [72560011] MLJTestInterface v0.2.9 [23777cdb] MLJTransforms v0.1.6 [03970b2e] MLJTuning v0.8.9 [b5d0f7f3] MLJWrappers v0.1.3 [f1d291b0] MLUtils v0.4.9 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.10 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.4 [872c559c] NNlib v0.9.36 [636a865e] NearestNeighborModels v0.2.3 [b8a86587] NearestNeighbors v0.4.27 [8b6db2d4] OpenML v0.3.3 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.3.0 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.6.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [a19d573c] StatisticalMeasures v0.3.6 [c062fc1d] StatisticalMeasuresBase v0.1.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.1 ⌅ [68821587] Arpack_jll v3.5.2+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ StatisticalMeasures → ScientificTypesExt ✗ MLJBase → DefaultMeasuresExt ✗ MLJ Info Given MLJTestIntegration was explicitly requested, output will be shown live  ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace:  [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1304  [2] _include_from_serialized  @ ./loading.jl:1276 [inlined]  [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2116  [4] _require_search_from_serialized  @ ./loading.jl:2010 [inlined]  [5] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2628  [6] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [7] macro expansion  @ ./loading.jl:2422 [inlined]  [8] macro expansion  @ ./lock.jl:376 [inlined]  [9] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [10] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3027  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [16] include_string  @ ./loading.jl:2883 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [18] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_5XKOl2". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3314  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117  [7] #invokelatest_gr#239  @ ./reflection.jl:1297 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1289 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3885  [10] maybe_cachefile_lock  @ ./loading.jl:3882 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [13] macro expansion  @ ./loading.jl:2422 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [17] top-level scope  @ ~/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:5  [18] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [23] include_string  @ ./loading.jl:2883 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [25] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:1 in expression starting at stdin:5 ✗ MLJTestIntegration 0 dependencies successfully precompiled in 62 seconds. 185 already precompiled. 122 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, Adapt → AdaptStaticArraysExt, AliasTables, Atomix, Base64, Calculus, CategoricalArrays, CategoricalArrays → CategoricalArraysRecipesBaseExt, CategoricalArrays → CategoricalArraysStatsBaseExt, CategoricalDistributions, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, ColorTypes, ColorTypes → StyledStringsExt, Combinatorics, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ComputationalResources, Crayons, DataAPI, DataStructures, DataValueInterfaces, Dates, DelimitedFiles, Distances, Distances → DistancesChainRulesCoreExt, Distances → DistancesSparseArraysExt, Distributed, Distributions, Distributions → DistributionsChainRulesCoreExt, Distributions → DistributionsTestExt, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStaticArraysExt, FillArrays → FillArraysStatisticsExt, FixedPointNumbers, GPUArraysCore, HypergeometricFunctions, InteractiveUtils, InvertedIndices, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, KernelAbstractions, KernelAbstractions → LinearAlgebraExt, KernelAbstractions → SparseArraysExt, LaTeXStrings, LearnAPI, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, Logging, MLCore, MLJBase, MLJModelInterface, MLUtils, MacroTools, Markdown, Measurements, Measurements → MeasurementsRecipesBaseExt, Measurements → MeasurementsSpecialFunctionsExt, Missings, Mmap, NNlib, NNlib → NNlibSpecialFunctionsExt, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Parameters, PrecompileTools, Preferences, PrettyTables, Printf, ProgressMeter, PtrArrays, QuadGK, REPL, RecipesBase, Reexport, Rmath, Rmath_jll, ScientificTypes, ScientificTypesBase, ScopedValues, Serialization, ShowCases, SimpleTraits, SortingAlgorithms, SparseArrays, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, StableRNGs, StaticArrays, StaticArrays → StaticArraysChainRulesCoreExt, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, StatisticalMeasuresBase, StatisticalTraits, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsFuns → StatsFunsChainRulesCoreExt, StringManipulation, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Test, UUIDs, UnPack, Unicode and UnsafeAtomics). Restart julia to access the new versions. Otherwise, 46 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJBase → DefaultMeasuresExt Failed to precompile DefaultMeasuresExt [fe5f6ac0-33d3-5066-8083-2d519bb7c971] to "/home/pkgeval/.julia/compiled/v1.12/DefaultMeasuresExt/jl_IVVEPI". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] top-level scope @ ~/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:5 [12] include(mod::Module, _path::String) @ Base ./Base.jl:306 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [14] top-level scope @ stdin:5 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string @ ./loading.jl:2883 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [19] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:1 in expression starting at stdin:5 MLJTestIntegration Failed to precompile MLJTestIntegration [697918b4-fdc1-4f9e-8ff9-929724cee270] to "/home/pkgeval/.julia/compiled/v1.12/MLJTestIntegration/jl_5ZBfUs". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_5XKOl2". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/GenerativeTopographicMapping/JdhkP/test/runtests.jl:5 Testing failed after 82.18s ERROR: LoadError: Package GenerativeTopographicMapping errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 936.74s: package fails to precompile