Package evaluation to test GaussianProcesses on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T20:41:05.501 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.82s ################################################################################ # Installation # Installing GaussianProcesses... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [891a1506] + GaussianProcesses v0.12.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [fdbdab4c] + ElasticArrays v1.2.12 [2904ab23] + ElasticPDMats v0.2.4 [4e289a0a] + EnumX v1.0.7 [442a2c76] + FastGaussQuadrature v1.3.0 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [f6369f11] + ForwardDiff v1.4.1 [891a1506] + GaussianProcesses v0.12.6 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 ⌃ [d3d80556] + LineSearches v7.5.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.4 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 11158.5 ms ✓ GaussianProcesses 1 dependency successfully precompiled in 15 seconds. 100 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 35 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 33.55s ################################################################################ # Testing # Testing GaussianProcesses Status `/tmp/jl_CfGV3U/Project.toml` [49dc2e85] Calculus v0.5.2 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [fdbdab4c] ElasticArrays v1.2.12 [2904ab23] ElasticPDMats v0.2.4 [442a2c76] FastGaussQuadrature v1.3.0 [f6369f11] ForwardDiff v1.4.1 [891a1506] GaussianProcesses v0.12.6 ⌅ [429524aa] Optim v1.13.3 [90014a1f] PDMats v0.11.37 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [6e75b9c4] ScikitLearnBase v0.5.0 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 ⌅ [4c63d2b9] StatsFuns v1.5.2 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CfGV3U/Manifest.toml` [47edcb42] ADTypes v1.22.0 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [49dc2e85] Calculus v0.5.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [fdbdab4c] ElasticArrays v1.2.12 [2904ab23] ElasticPDMats v0.2.4 [4e289a0a] EnumX v1.0.7 [442a2c76] FastGaussQuadrature v1.3.0 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [f6369f11] ForwardDiff v1.4.1 [891a1506] GaussianProcesses v0.12.6 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.4 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [6e75b9c4] ScikitLearnBase v0.5.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 ⌅ [4c63d2b9] StatsFuns v1.5.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Utils | 1 1 3.6s 9.830010 seconds (5.76 M allocations: 357.594 MiB, 10.85% gc time, 47.92% compilation time: 8% of which was recompilation) Test Summary: | Pass Total Time GP | 5 5 20.9s 21.280047 seconds (8.96 M allocations: 467.763 MiB, 2.38% gc time, 99.61% compilation time) Testing MeanZero... Testing MeanConst... Testing MeanLin... Testing MeanPoly... Testing MeanPeriodic... Observation #2: Test Failed at /home/pkgeval/.julia/packages/GaussianProcesses/lFZai/test/means.jl:50 Expression: ≈(theor_grad, num_grad, rtol = 1.0e-5, atol = 1.0e-5) Evaluated: [-0.5918859580342372, 0.825170149281536, 0.9451568428395598, 0.7039301067840997, 0.8060217197333415, 0.5648842578216245, 0.3266168128458112, -0.7102692480763375, -3.2390075154258784, -0.18589393339392354, 8.91491064982429, -1.2232169894453528] ≈ [-0.5918859580315244, 0.8251701492819554, 0.9451568428371511, 0.7039064797536203, 0.8060217197310169, 0.5648842578363397, 0.3266168128373443, -0.7102926634683854, -3.239007515330688, -0.18589393341140056, 8.914910615225352, -1.2229730237433418] (rtol=1.0e-5, atol=1.0e-5) Stacktrace: [1] top-level scope @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:23 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [5] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:43 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [7] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:43 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [9] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:50 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] Observation #3: Test Failed at /home/pkgeval/.julia/packages/GaussianProcesses/lFZai/test/means.jl:50 Expression: ≈(theor_grad, num_grad, rtol = 1.0e-5, atol = 1.0e-5) Evaluated: [0.7263014412077748, -0.7801941363167271, -0.4777187310256596, 0.842450139869483, 0.6873763281489327, 0.6255374566378868, -0.8785128422665394, -0.5387743143783753, -0.39191949050896724, -1.4681862968233073, -11.517506052131944, -2.8623272145147785] ≈ [0.7263014411898127, -0.7801941363186452, -0.4777187310120942, 0.8424314967004422, 0.6873763281430367, 0.6255374566157481, -0.8785128422760774, -0.5388034645051678, -0.39191949054847536, -1.4681862967058088, -11.517506033565834, -2.8620697807323676] (rtol=1.0e-5, atol=1.0e-5) Stacktrace: [1] top-level scope @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:23 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [5] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:43 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [7] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:43 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [9] macro expansion @ ~/.julia/packages/GaussianProcesses/lFZai/test/means.jl:50 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] Testing ProdMean... [19] signal 11 (128): Segmentation fault in expression starting at /home/pkgeval/.julia/packages/GaussianProcesses/lFZai/test/means.jl:7 set_params! at /home/pkgeval/.julia/packages/GaussianProcesses/lFZai/src/common.jl:113 unknown function (ip: 0x7851187c2156) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 [inlined] macro expansion at ./timing.jl:697 [inlined] top-level scope at /home/pkgeval/.julia/packages/GaussianProcesses/lFZai/test/runtests.jl:4 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x785119d47249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 24521572 (Pool: 24521266; Big: 306); GC: 19 Testing failed after 58.81s ERROR: LoadError: Package GaussianProcesses errored during testing (received signal: 11) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 127.0s: a segmentation fault happened