Package evaluation to test FlxQTL on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T17:40:09.184 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.15s ################################################################################ # Installation # Installing FlxQTL... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [ede81e08] + FlxQTL v4.0.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [ede81e08] + FlxQTL v4.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [30fc2ffe] + LossFunctions v1.2.0 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 16121.3 ms ✓ FlxQTL 1 dependency successfully precompiled in 18 seconds. 58 already precompiled. 8 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 20 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 36.14s ################################################################################ # Testing # Testing FlxQTL Status `/tmp/jl_Uns0Fm/Project.toml` [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.127 [ede81e08] FlxQTL v4.0.2 [30fc2ffe] LossFunctions v1.2.0 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Uns0Fm/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [ede81e08] FlxQTL v4.0.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [2ab3a3ac] LogExpFunctions v1.0.1 [30fc2ffe] LossFunctions v1.2.0 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... rand(Random.Xoshiro(seed + myid())) = 0.02903627120676744 From worker 2: rand(Random.Xoshiro(seed + myid())) = 0.2293019828841396 From worker 5: rand(Random.Xoshiro(seed + myid())) = 0.5261301753598052 From worker 3: rand(Random.Xoshiro(seed + myid())) = 0.6140724580776808 From worker 4: rand(Random.Xoshiro(seed + myid())) = 0.8943305188090829 Positive definiteness dropping chromosome 1 is true. Positive definiteness dropping chromosome 2 is true. Test Passed Test Passed Kinship dropping chromosome 1 is corrected to be positive definite:true Kinship dropping chromosome 2 is corrected to be positive definite:true Test Passed Test Passed Kinship dropping chromosome 1 is corrected to be positive definite:true Kinship dropping chromosome 2 is corrected to be positive definite:true Test Passed Test Passed Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedKinship dropping chromosome 1 is corrected to be positive definite:false Kinship dropping chromosome 2 is corrected to be positive definite:false Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Summary: | Pass Total Time FlxQTL.jl | 369 369 39m52.6s Testing FlxQTL tests passed Testing completed after 2227.18s PkgEval succeeded after 2472.95s