Package evaluation to test ExpFamilyPCA on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T00:07:45.644 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.78s ################################################################################ # Installation # Installing ExpFamilyPCA... Resolving package versions... Installed GPUArraysCore ─────────────── v0.2.0 Installed TaskLocalValues ───────────── v0.1.3 Installed SciMLStructures ───────────── v1.10.0 Installed MutableArithmetics ────────── v1.8.0 Installed JpegTurbo_jll ─────────────── v3.1.5+0 Installed IrrationalConstants ───────── v0.2.6 Installed DiffRules ─────────────────── v1.16.0 Installed DynamicPolynomials ────────── v0.6.6 Installed Adapt ─────────────────────── v4.6.1 Installed FunctionWrappersWrappers ──── v1.9.1 Installed IntegerMathUtils ──────────── v0.1.3 Installed OffsetArrays ──────────────── v1.17.0 Installed Rmath ─────────────────────── v0.9.0 Installed HypergeometricFunctions ───── v0.3.28 Installed MultivariatePolynomials ───── v0.5.19 Installed ExpFamilyPCA ──────────────── v2.0.3 Installed IntervalSets ──────────────── v0.7.14 Installed SciMLPublic ───────────────── v1.0.1 Installed SciMLBase ─────────────────── v2.155.1 Installed CompositeTypes ────────────── v0.1.4 Installed StatsFuns ─────────────────── v2.2.0 Installed Preferences ───────────────── v1.5.2 Installed PtrArrays ─────────────────── v1.4.0 Installed Latexify ──────────────────── v0.16.10 Installed LoggingExtras ─────────────── v1.2.0 Installed Accessors ─────────────────── v0.1.44 Installed Sobol ─────────────────────── v1.5.0 Installed DiffResults ───────────────── v1.1.0 Installed Jieko ─────────────────────── v0.2.1 Installed RuntimeGeneratedFunctions ─── v0.5.19 Installed PositiveFactorizations ────── v0.2.4 Installed SciMLOperators ────────────── v1.22.0 Installed ADTypes ───────────────────── v1.22.0 Installed SciMLLogging ──────────────── v1.10.1 Installed Symbolics ─────────────────── v6.58.0 Installed SpecialFunctions ──────────── v2.8.0 Installed TermInterface ─────────────── v2.0.0 Installed PDMats ────────────────────── v0.11.37 Installed DomainSets ────────────────── v0.7.18 Installed DataAPI ───────────────────── v1.16.0 Installed Moshi ─────────────────────── v0.3.8 Installed Optim ─────────────────────── v1.13.3 Installed Format ────────────────────── v1.3.7 Installed TimerOutputs ──────────────── v0.5.29 Installed RecipesBase ───────────────── v1.3.4 Installed ExproniconLite ────────────── v0.10.14 Installed Setfield ──────────────────── v1.1.2 Installed Primes ────────────────────── v0.5.7 Installed NaNMath ───────────────────── v1.1.4 Installed TruncatedStacktraces ──────── v1.4.0 Installed SymbolicUtils ─────────────── v3.32.0 Installed StaticArraysCore ──────────── v1.4.4 Installed JLLWrappers ───────────────── v1.8.0 Installed SymbolicLimits ────────────── v0.2.3 Installed ConstructionBase ──────────── v1.6.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed StaticArrays ──────────────── v1.9.18 Installed Bijections ────────────────── v0.2.2 Installed PrecompileTools ───────────── v1.3.4 Installed AbstractTrees ─────────────── v0.4.5 Installed LaTeXStrings ──────────────── v1.4.0 Installed OrderedCollections ────────── v1.8.2 Installed Unityper ──────────────────── v0.1.6 Installed EnumX ─────────────────────── v1.0.7 Installed FunctionWrappers ──────────── v1.1.3 Installed NLSolversBase ─────────────── v7.10.0 Installed Combinatorics ─────────────── v1.0.2 Installed DelimitedFiles ────────────── v1.9.1 Installed SymbolicIndexingInterface ─── v0.3.48 Installed ChainRulesCore ────────────── v1.26.1 Installed RecursiveArrayTools ───────── v3.54.0 Installed ArrayInterface ────────────── v7.25.0 Installed FillArrays ────────────────── v1.16.0 Installed Reexport ──────────────────── v1.2.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Statistics ────────────────── v1.11.1 Installed LineSearches ──────────────── v7.5.1 Installed QuadGK ────────────────────── v2.11.3 Installed Ghostscript_jll ───────────── v9.55.1+0 Installed CommonSubexpressions ──────── v0.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DataStructures ────────────── v0.19.5 Installed ForwardDiff ───────────────── v0.10.39 Installed StarAlgebras ──────────────── v0.3.0 Installed PreallocationTools ────────── v0.4.34 Installed AliasTables ───────────────── v1.1.3 Installed StatsAPI ──────────────────── v1.8.0 Installed CompositionsBase ──────────── v0.1.2 Installed ExprTools ─────────────────── v0.1.10 Installed Requires ──────────────────── v1.3.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed CommonWorldInvalidations ──── v1.0.0 Installed InverseFunctions ──────────── v0.1.17 Installed Compat ────────────────────── v4.18.1 Installed CommonSolve ───────────────── v0.2.7 Installed MacroTools ────────────────── v0.5.16 Installed Distances ─────────────────── v0.10.12 Installed Missings ──────────────────── v1.2.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed StatsBase ─────────────────── v0.34.12 Installed DocStringExtensions ───────── v0.9.5 Installed FunctionMaps ──────────────── v0.1.2 Installed FiniteDiff ────────────────── v2.31.0 Installed Distributions ─────────────── v0.25.127 Installed DifferentiationInterface ──── v0.7.18 Installing 4 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.12/Project.toml` [9c724b78] + ExpFamilyPCA v2.0.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [e2ed5e7c] + Bijections v0.2.2 [d360d2e6] + ChainRulesCore v1.26.1 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [5b8099bc] + DomainSets v0.7.18 [7c1d4256] + DynamicPolynomials v0.6.6 [4e289a0a] + EnumX v1.0.7 [9c724b78] + ExpFamilyPCA v2.0.3 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.9.1 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ae98c720] + Jieko v0.2.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 ⌃ [d3d80556] + LineSearches v7.5.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.8 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.8.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [85a6dd25] + PositiveFactorizations v0.2.4 ⌃ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v3.54.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 ⌅ [0bca4576] + SciMLBase v2.155.1 ⌅ [a6db7da4] + SciMLLogging v1.10.1 [c0aeaf25] + SciMLOperators v1.22.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [0c0c59c1] + StarAlgebras v0.3.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [2efcf032] + SymbolicIndexingInterface v0.3.48 ⌅ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.58.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 16.71s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4466.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 2205.4 ms ✓ Combinatorics 4492.2 ms ✓ FunctionWrappers 823.7 ms ✓ LaTeXStrings 953.0 ms ✓ PositiveFactorizations 877.8 ms ✓ ExprTools 715.0 ms ✓ IteratorInterfaceExtensions 863.5 ms ✓ StatsAPI 1503.2 ms ✓ ADTypes 6583.9 ms ✓ ExproniconLite 1724.9 ms ✓ OffsetArrays 2669.1 ms ✓ Format 1932.3 ms ✓ FillArrays 843.9 ms ✓ IntegerMathUtils 925.1 ms ✓ InverseFunctions 1099.6 ms ✓ Statistics 756.3 ms ✓ CommonSolve 7593.2 ms ✓ MacroTools 893.8 ms ✓ CompositeTypes 4212.7 ms ✓ OrderedCollections 852.1 ms ✓ EnumX 747.7 ms ✓ Reexport 1124.4 ms ✓ DocStringExtensions 1102.5 ms ✓ AbstractTrees 5220.6 ms ✓ IrrationalConstants 1049.5 ms ✓ IntervalSets 816.5 ms ✓ CompositionsBase 802.8 ms ✓ PtrArrays 813.9 ms ✓ TaskLocalValues 3908.8 ms ✓ NaNMath 974.2 ms ✓ DelimitedFiles 3078.3 ms ✓ ConstructionBase 796.7 ms ✓ Adapt 745.3 ms ✓ CommonWorldInvalidations 780.5 ms ✓ DataAPI 740.6 ms ✓ TermInterface 698.4 ms ✓ SciMLPublic 870.1 ms ✓ StaticArraysCore 2968.1 ms ✓ Bijections 1706.8 ms ✓ PDMats 1167.0 ms ✓ Requires 1044.4 ms ✓ LoggingExtras 1169.2 ms ✓ Preferences 4112.3 ms ✓ Compat 12192.9 ms ✓ MutableArithmetics 3921.8 ms ✓ RuntimeGeneratedFunctions 6265.6 ms ✓ TimerOutputs 4739.6 ms ✓ DifferentiationInterface 3666.5 ms ✓ Jieko 1559.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1192.1 ms ✓ Primes 1839.9 ms ✓ InverseFunctions → InverseFunctionsTestExt 884.3 ms ✓ InverseFunctions → InverseFunctionsDatesExt 4471.7 ms ✓ Distances 1347.5 ms ✓ Statistics → SparseArraysExt 888.7 ms ✓ FillArrays → FillArraysStatisticsExt 1666.9 ms ✓ CommonSubexpressions 3565.6 ms ✓ DataStructures 1425.5 ms ✓ LogExpFunctions 825.9 ms ✓ IntervalSets → IntervalSetsRandomExt 875.3 ms ✓ IntervalSets → IntervalSetsStatisticsExt 854.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1005.9 ms ✓ AliasTables 2798.7 ms ✓ Sobol 831.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 855.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 900.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 1341.5 ms ✓ Adapt → AdaptSparseArraysExt 4067.2 ms ✓ ArrayInterface 1208.2 ms ✓ GPUArraysCore 866.2 ms ✓ OffsetArrays → OffsetArraysAdaptExt 3796.7 ms ✓ Missings 835.0 ms ✓ DiffResults 1456.9 ms ✓ FillArrays → FillArraysPDMatsExt 1308.6 ms ✓ JLLWrappers 1039.8 ms ✓ PrecompileTools 1670.7 ms ✓ TruncatedStacktraces 1368.2 ms ✓ SciMLLogging 877.9 ms ✓ Compat → CompatLinearAlgebraExt 8622.6 ms ✓ StarAlgebras 1370.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 22687.0 ms ✓ Moshi 1379.1 ms ✓ Distances → DistancesSparseArraysExt 1084.3 ms ✓ SortingAlgorithms 5101.3 ms ✓ QuadGK 784.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 3280.6 ms ✓ Unityper 2286.3 ms ✓ Setfield 5760.5 ms ✓ Accessors 970.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 698.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 774.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 710.6 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1066.2 ms ✓ Rmath_jll 1116.1 ms ✓ JpegTurbo_jll 1127.7 ms ✓ OpenSpecFun_jll 14013.7 ms ✓ StaticArrays 2631.0 ms ✓ RecipesBase 2944.0 ms ✓ SciMLStructures 1352.5 ms ✓ PreallocationTools 3995.1 ms ✓ FunctionWrappersWrappers 4034.6 ms ✓ ChainRulesCore 6061.6 ms ✓ MultivariatePolynomials 5489.8 ms ✓ StatsBase 1562.9 ms ✓ Accessors → LinearAlgebraExt 1340.0 ms ✓ Accessors → TestExt 1631.3 ms ✓ Accessors → IntervalSetsExt 1017.5 ms ✓ FiniteDiff 1307.1 ms ✓ Rmath 1129.4 ms ✓ Ghostscript_jll 4385.0 ms ✓ SpecialFunctions 1015.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1094.6 ms ✓ FillArrays → FillArraysStaticArraysExt 1885.7 ms ✓ FunctionMaps 1093.7 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1033.5 ms ✓ Adapt → AdaptStaticArraysExt 1137.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1152.1 ms ✓ Accessors → StaticArraysExt 1007.1 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 3080.4 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 674.3 ms ✓ ADTypes → ADTypesChainRulesCoreExt 683.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 676.0 ms ✓ Distances → DistancesChainRulesCoreExt 2811.3 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 656.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2992.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 6294.5 ms ✓ DynamicPolynomials 4334.4 ms ✓ MultivariatePolynomials → MultivariatePolynomialsChainRulesCoreExt 1116.9 ms ✓ PDMats → StatsBaseExt 5503.0 ms ✓ SciMLOperators 4563.1 ms ✓ SymbolicIndexingInterface 985.8 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1012.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 758.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 8216.7 ms ✓ Latexify 3368.6 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1597.7 ms ✓ HypergeometricFunctions 1004.2 ms ✓ DiffRules 3963.9 ms ✓ DomainSets 827.6 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1557.6 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 8538.7 ms ✓ RecursiveArrayTools 1795.3 ms ✓ Latexify → SparseArraysExt 42229.7 ms ✓ SymbolicUtils 4005.1 ms ✓ StatsFuns 10499.9 ms ✓ ForwardDiff 1120.9 ms ✓ DomainSets → DomainSetsRandomExt 974.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 1389.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 7863.5 ms ✓ SymbolicLimits 786.1 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 2869.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 7320.6 ms ✓ Distributions 3056.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3179.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 995.9 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1492.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 29244.8 ms ✓ SciMLBase 2464.3 ms ✓ Distributions → DistributionsTestExt 4069.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 3907.2 ms ✓ NLSolversBase 3545.9 ms ✓ SciMLBase → SciMLBaseDistributionsExt 3223.0 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2718.5 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 6914.6 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 5726.0 ms ✓ LineSearches 46806.4 ms ✓ Symbolics 8297.7 ms ✓ Optim 11295.0 ms ✓ Symbolics → SymbolicsForwardDiffExt 8005.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 8157.0 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 10736.7 ms ✓ ExpFamilyPCA 171 dependencies successfully precompiled in 589 seconds. 22 already precompiled. 10 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML, UUIDs and Zlib_jll). Restart julia to access the new versions. Otherwise, 93 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 609.01s ################################################################################ # Testing # Testing ExpFamilyPCA Status `/tmp/jl_bIjtOa/Project.toml` [b4f34e82] Distances v0.10.12 [9c724b78] ExpFamilyPCA v2.0.3 [069b7b12] FunctionWrappers v1.1.3 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [429524aa] Optim v1.13.3 [ed01d8cd] Sobol v1.5.0 [10745b16] Statistics v1.11.1 ⌅ [0c5d862f] Symbolics v6.58.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bIjtOa/Manifest.toml` [47edcb42] ADTypes v1.22.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [e2ed5e7c] Bijections v0.2.2 [d360d2e6] ChainRulesCore v1.26.1 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 ⌅ [5b8099bc] DomainSets v0.7.18 [7c1d4256] DynamicPolynomials v0.6.6 [4e289a0a] EnumX v1.0.7 [9c724b78] ExpFamilyPCA v2.0.3 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [1fa38f19] Format v1.3.7 ⌃ [f6369f11] ForwardDiff v0.10.39 [a85aefff] FunctionMaps v0.1.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.9.1 [46192b85] GPUArraysCore v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [ae98c720] Jieko v0.2.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.8 [102ac46a] MultivariatePolynomials v0.5.19 [d8a4904e] MutableArithmetics v1.8.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [85a6dd25] PositiveFactorizations v0.2.4 ⌃ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v3.54.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.19 ⌅ [0bca4576] SciMLBase v2.155.1 ⌅ [a6db7da4] SciMLLogging v1.10.1 [c0aeaf25] SciMLOperators v1.22.0 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.10.0 [efcf1570] Setfield v1.1.2 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [0c0c59c1] StarAlgebras v0.3.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [2efcf032] SymbolicIndexingInterface v0.3.48 ⌅ [19f23fe9] SymbolicLimits v0.2.3 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.58.0 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [781d530d] TruncatedStacktraces v1.4.0 [a7c27f48] Unityper v0.1.6 [61579ee1] Ghostscript_jll v9.55.1+0 [aacddb02] JpegTurbo_jll v3.1.5+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Gamma: Error During Test at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:1 Got exception outside of a @test DomainError with -869.9400649486282: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] Bg @ ~/.julia/packages/ExpFamilyPCA/w6PkA/src/family/gamma.jl:30 [inlined] [5] _broadcast_getindex_evalf @ ./broadcast.jl:699 [inlined] [6] _broadcast_getindex @ ./broadcast.jl:672 [inlined] [7] _getindex @ ./broadcast.jl:620 [inlined] [8] getindex @ ./broadcast.jl:616 [inlined] [9] macro expansion @ ./broadcast.jl:995 [inlined] [10] macro expansion @ ./simdloop.jl:77 [inlined] [11] copyto! @ ./broadcast.jl:994 [inlined] [12] copyto! @ ./broadcast.jl:947 [inlined] [13] copy @ ./broadcast.jl:919 [inlined] [14] materialize @ ./broadcast.jl:894 [inlined] [15] (::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"})(x::Vector{Float64}, θ::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/constructors/epca4.jl:19 [16] (::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}})(â::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:122 [17] finite_difference_gradient!(df::Vector{Float64}, f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, x::Vector{Float64}, cache::FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}; relstep::Float64, absstep::Float64, dir::Bool) @ FiniteDiff ~/.julia/packages/FiniteDiff/hMV7l/src/gradients.jl:436 [18] finite_difference_gradient! @ ~/.julia/packages/FiniteDiff/hMV7l/src/gradients.jl:390 [inlined] [19] value_and_gradient! @ ~/.julia/packages/DifferentiationInterface/f85Vv/ext/DifferentiationInterfaceFiniteDiffExt/onearg.jl:329 [inlined] [20] (::NLSolversBase.var"#fg!#OnceDifferentiable##1"{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, DifferentiationInterfaceFiniteDiffExt.FiniteDiffGradientPrep{Tuple{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}, Vector{Float64}, Tuple{}}, FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}, Float64, Float64, Bool}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}})(_g::Vector{Float64}, _x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/objective_types/oncedifferentiable.jl:53 [21] value_gradient!!(obj::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/interface.jl:82 [22] value_gradient!!(bw::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:86 [23] initial_state(method::Optim.LBFGS{Optim.InverseDiagonal, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Optim.var"#optimize##0#optimize##1"{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}}}, options::Optim.Options{Float64, Nothing}, d::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, initial_x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/first_order/l_bfgs.jl:168 [24] optimize(df::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, l::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, u::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, initial_x::Vector{Float64}, F::Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, options::Optim.Options{Float64, Nothing}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:456 [25] #optimize#48 @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:395 [inlined] [26] optimize (repeats 3 times) @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:381 [inlined] [27] optimize @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:296 [inlined] [28] _optimize(f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, lower::Nothing, upper::Float64, x0::SubArray{Float64, 1, Matrix{Float64}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}}, true}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:91 [29] _single_compress_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:121 [30] _single_fit_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:164 [31] _fit(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, maxiter::Int64, verbose::Bool, steps_per_print::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:245 [32] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}; maxiter::Int64, verbose::Bool, steps_per_print::Int64) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:119 [33] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:109 [34] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:2 [35] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [36] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:8 [inlined] [37] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [38] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:14 [39] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [40] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:17 [inlined] [41] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [42] top-level scope @ none:6 [43] eval(m::Module, e::Any) @ Core ./boot.jl:489 [44] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [45] _start() @ Base ./client.jl:550 ItakuraSaito: Error During Test at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:18 Got exception outside of a @test DomainError with -869.9400649486282: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] Bg @ ~/.julia/packages/ExpFamilyPCA/w6PkA/src/family/gamma.jl:30 [inlined] [5] _broadcast_getindex_evalf @ ./broadcast.jl:699 [inlined] [6] _broadcast_getindex @ ./broadcast.jl:672 [inlined] [7] _getindex @ ./broadcast.jl:620 [inlined] [8] getindex @ ./broadcast.jl:616 [inlined] [9] macro expansion @ ./broadcast.jl:995 [inlined] [10] macro expansion @ ./simdloop.jl:77 [inlined] [11] copyto! @ ./broadcast.jl:994 [inlined] [12] copyto! @ ./broadcast.jl:947 [inlined] [13] copy @ ./broadcast.jl:919 [inlined] [14] materialize @ ./broadcast.jl:894 [inlined] [15] (::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"})(x::Vector{Float64}, θ::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/constructors/epca4.jl:19 [16] (::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}})(â::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:122 [17] finite_difference_gradient!(df::Vector{Float64}, f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, x::Vector{Float64}, cache::FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}; relstep::Float64, absstep::Float64, dir::Bool) @ FiniteDiff ~/.julia/packages/FiniteDiff/hMV7l/src/gradients.jl:436 [18] finite_difference_gradient! @ ~/.julia/packages/FiniteDiff/hMV7l/src/gradients.jl:390 [inlined] [19] value_and_gradient! @ ~/.julia/packages/DifferentiationInterface/f85Vv/ext/DifferentiationInterfaceFiniteDiffExt/onearg.jl:329 [inlined] [20] (::NLSolversBase.var"#fg!#OnceDifferentiable##1"{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, DifferentiationInterfaceFiniteDiffExt.FiniteDiffGradientPrep{Tuple{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}, Vector{Float64}, Tuple{}}, FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}, Float64, Float64, Bool}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}})(_g::Vector{Float64}, _x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/objective_types/oncedifferentiable.jl:53 [21] value_gradient!!(obj::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/interface.jl:82 [22] value_gradient!!(bw::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:86 [23] initial_state(method::Optim.LBFGS{Optim.InverseDiagonal, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Optim.var"#optimize##0#optimize##1"{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}}}, options::Optim.Options{Float64, Nothing}, d::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, initial_x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/first_order/l_bfgs.jl:168 [24] optimize(df::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, l::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, u::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, initial_x::Vector{Float64}, F::Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, options::Optim.Options{Float64, Nothing}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:456 [25] #optimize#48 @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:395 [inlined] [26] optimize (repeats 3 times) @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:381 [inlined] [27] optimize @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:296 [inlined] [28] _optimize(f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, lower::Nothing, upper::Float64, x0::SubArray{Float64, 1, Matrix{Float64}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}}, true}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:91 [29] _single_compress_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:121 [30] _single_fit_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:164 [31] _fit(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, maxiter::Int64, verbose::Bool, steps_per_print::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:245 [32] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}; maxiter::Int64, verbose::Bool, steps_per_print::Int64) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:119 [33] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:109 [34] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:19 [35] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [36] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:25 [inlined] [37] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [38] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:14 [39] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [40] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:17 [inlined] [41] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [42] top-level scope @ none:6 [43] eval(m::Module, e::Any) @ Core ./boot.jl:489 [44] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [45] _start() @ Base ./client.jl:550 Test Summary: | Pass Error Total Time ExpFamilyPCA.jl | 456 2 458 5m26.8s Poisson | 92 92 1m24.4s Gaussian | 92 92 38.9s Bernoulli | 12 12 4.3s Gamma | 1 1 10.3s ItakuraSaito | 1 1 0.2s Binomial | 12 12 4.1s Continuous Bernoulli | 12 12 4.0s Negative Binomial | 12 12 4.7s Pareto | 12 12 5.9s Weibull | 12 12 4.8s Misc Options Tests | 196 196 55.6s Positive Domain | 1 1 1m44.9s Negative Domain | 3 3 4.7s RNG of the outermost testset: Xoshiro(0xfff0241072ddab67, 0xc53bc12f4c3f0b4e, 0x56d451780b2dd4ba, 0x50a4aa153d208dd8, 0x3649a58b3b63d5db) ERROR: LoadError: Some tests did not pass: 456 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:13 Testing failed after 353.81s ERROR: LoadError: Package ExpFamilyPCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1009.61s: package tests unexpectedly errored