Package evaluation to test EpithelialDynamics1D on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T00:34:00.262 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.22s ################################################################################ # Installation # Installing EpithelialDynamics1D... Resolving package versions... Installed GPUArraysCore ──────────────────── v0.1.5 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed Crayons ────────────────────────── v4.1.1 Installed SIMDTypes ──────────────────────── v0.1.0 Installed DiffRules ──────────────────────── v1.16.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed Tricks ─────────────────────────── v0.1.13 Installed IrrationalConstants ────────────── v0.2.6 Installed Adapt ──────────────────────────── v3.7.2 Installed Functors ───────────────────────── v0.4.12 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed LayoutPointers ─────────────────── v0.1.17 Installed SciMLPublic ────────────────────── v1.0.1 Installed CpuId ──────────────────────────── v0.3.1 Installed StrideArraysCore ───────────────── v0.5.9 Installed DiffEqBase ─────────────────────── v6.130.0 Installed PtrArrays ──────────────────────── v1.4.0 Installed Accessors ──────────────────────── v0.1.44 Installed Preferences ────────────────────── v1.5.2 Installed SciMLBase ──────────────────────── v1.98.1 Installed TableTraits ────────────────────── v1.0.1 Installed FiniteVolumeMethod1D ───────────── v1.1.3 Installed PrettyTables ───────────────────── v2.4.0 Installed NLsolve ────────────────────────── v4.5.1 Installed DiffResults ────────────────────── v1.1.0 Installed RuntimeGeneratedFunctions ──────── v0.5.19 Installed Tables ─────────────────────────── v1.12.1 Installed DataAPI ────────────────────────── v1.16.0 Installed SciMLOperators ─────────────────── v0.3.12 Installed CPUSummary ─────────────────────── v0.2.6 Installed ADTypes ────────────────────────── v0.2.7 Installed SpecialFunctions ───────────────── v2.8.0 Installed DiffEqCallbacks ────────────────── v2.36.1 Installed FindFirstFunctions ─────────────── v1.8.0 Installed IfElse ─────────────────────────── v0.1.1 Installed Setfield ───────────────────────── v1.1.2 Installed RecipesBase ────────────────────── v1.3.4 Installed Polyester ──────────────────────── v0.7.19 Installed TruncatedStacktraces ───────────── v1.4.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed DataValueInterfaces ────────────── v1.0.0 Installed ConstructionBase ───────────────── v1.6.0 Installed NaNMath ────────────────────────── v1.1.4 Installed JLLWrappers ────────────────────── v1.8.0 Installed StaticArraysCore ───────────────── v1.4.4 Installed ThreadingUtilities ─────────────── v0.5.6 Installed LaTeXStrings ───────────────────── v1.4.0 Installed OrderedCollections ─────────────── v1.8.2 Installed ManualMemory ───────────────────── v0.1.8 Installed DataInterpolations ─────────────── v4.8.0 Installed PrecompileTools ────────────────── v1.3.4 Installed EnumX ──────────────────────────── v1.0.7 Installed SymbolicIndexingInterface ──────── v0.2.2 Installed ChainRulesCore ─────────────────── v1.26.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed PolyesterWeave ─────────────────── v0.2.2 Installed NLSolversBase ──────────────────── v7.8.3 Installed FillArrays ─────────────────────── v1.16.0 Installed LineSearches ───────────────────── v7.5.1 Installed RecursiveArrayTools ────────────── v2.38.10 Installed ArrayInterface ─────────────────── v7.7.1 Installed ForwardDiff ────────────────────── v0.10.39 Installed Reexport ───────────────────────── v1.2.2 Installed Statistics ─────────────────────── v1.11.1 Installed CommonSubexpressions ───────────── v0.3.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed EpithelialDynamics1D ───────────── v1.8.3 Installed Requires ───────────────────────── v1.3.1 Installed PreallocationTools ─────────────── v0.4.24 Installed DataStructures ─────────────────── v0.18.22 Installed AliasTables ────────────────────── v1.1.3 Installed FastBroadcast ──────────────────── v0.2.8 Installed ZygoteRules ────────────────────── v0.2.7 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed CompositionsBase ───────────────── v0.1.2 Installed StatsAPI ───────────────────────── v1.8.0 Installed UnPack ─────────────────────────── v1.0.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Parameters ─────────────────────── v0.12.3 Installed InverseFunctions ───────────────── v0.1.17 Installed ExprTools ──────────────────────── v0.1.10 Installed Static ─────────────────────────── v0.8.10 Installed MacroTools ─────────────────────── v0.5.16 Installed Compat ─────────────────────────── v4.18.1 Installed CommonSolve ────────────────────── v0.2.7 Installed Missings ───────────────────────── v1.2.0 Installed Distances ──────────────────────── v0.10.12 Installed MovingBoundaryProblems1D ───────── v1.0.3 Installed StatsBase ──────────────────────── v0.34.12 Installed SortingAlgorithms ──────────────── v1.2.2 Installed StaticArrayInterface ───────────── v1.10.0 Installed StringManipulation ─────────────── v0.4.4 Installed DocStringExtensions ────────────── v0.9.5 Installed FiniteDiff ─────────────────────── v2.31.0 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [ace8a2d7] + EpithelialDynamics1D v1.8.3 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [7d9f7c33] + Accessors v0.1.44 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌃ [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.26.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [82cc6244] + DataInterpolations v4.8.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [2b5f629d] + DiffEqBase v6.130.0 ⌅ [459566f4] + DiffEqCallbacks v2.36.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [ace8a2d7] + EpithelialDynamics1D v1.8.3 [e2ba6199] + ExprTools v0.1.10 ⌅ [7034ab61] + FastBroadcast v0.2.8 [1a297f60] + FillArrays v1.16.0 ⌅ [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.31.0 ⌃ [cfdabe9e] + FiniteVolumeMethod1D v1.1.3 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 ⌅ [46192b85] + GPUArraysCore v0.1.5 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 ⌃ [d3d80556] + LineSearches v7.5.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [a903a81a] + MovingBoundaryProblems1D v1.0.3 [46d2c3a1] + MuladdMacro v0.2.4 ⌅ [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.4 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌅ [d96e819e] + Parameters v0.12.3 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 ⌅ [d236fae5] + PreallocationTools v0.4.24 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.4.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v1.98.1 ⌅ [c0aeaf25] + SciMLOperators v0.3.12 [431bcebd] + SciMLPublic v1.0.1 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 ⌅ [aedffcd0] + Static v0.8.10 [0d7ed370] + StaticArrayInterface v1.10.0 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [7792a7ef] + StrideArraysCore v0.5.9 [892a3eda] + StringManipulation v0.4.4 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.6 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.63s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4005.6 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 1049.8 ms ✓ RangeArrays 822.6 ms ✓ SimpleUnPack 4676.2 ms ✓ FunctionWrappers 922.7 ms ✓ MuladdMacro 879.5 ms ✓ ConcreteStructs 8378.9 ms ✓ BaseDirs 1052.7 ms ✓ AbstractFFTs 914.2 ms ✓ LaTeXStrings 996.0 ms ✓ IndirectArrays 908.3 ms ✓ PolygonOps 1046.7 ms ✓ ExprTools 864.9 ms ✓ IteratorInterfaceExtensions 1033.4 ms ✓ Tricks 1039.7 ms ✓ TensorCore 1034.2 ms ✓ StatsAPI 1336.9 ms ✓ ADTypes 877.4 ms ✓ Contour 3652.3 ms ✓ CEnum 1740.6 ms ✓ OffsetArrays 970.1 ms ✓ TriplotBase 2460.5 ms ✓ Format 753.1 ms ✓ UnPack 1901.8 ms ✓ FillArrays 831.3 ms ✓ IntegerMathUtils 929.7 ms ✓ InverseFunctions 1188.9 ms ✓ Statistics 907.7 ms ✓ CommonSolve 1367.7 ms ✓ IterTools 7490.1 ms ✓ MacroTools 750.5 ms ✓ SafeTestsets 1129.9 ms ✓ ManualMemory 4746.5 ms ✓ OrderedCollections 4317.8 ms ✓ Observables 795.5 ms ✓ DataValueInterfaces 890.0 ms ✓ EnumX 1020.3 ms ✓ StableRNGs 775.4 ms ✓ Reexport 745.4 ms ✓ SIMDTypes 1102.2 ms ✓ DocStringExtensions 1078.8 ms ✓ AbstractTrees 5023.6 ms ✓ IrrationalConstants 1056.8 ms ✓ IntervalSets 892.6 ms ✓ RoundingEmulator 826.6 ms ✓ DeepDiffs 812.0 ms ✓ CompositionsBase 823.5 ms ✓ PtrArrays 1213.5 ms ✓ TranscodingStreams 2775.5 ms ✓ AdaptivePredicates 3689.6 ms ✓ NaNMath 3572.9 ms ✓ LazyModules 993.3 ms ✓ Inflate 1005.3 ms ✓ EnzymeCore 771.5 ms ✓ IfElse 3796.8 ms ✓ ConstructionBase 826.9 ms ✓ DataAPI 775.2 ms ✓ PackageExtensionCompat 4842.1 ms ✓ Crayons 830.0 ms ✓ FastClosures 3187.2 ms ✓ FastLapackInterface 4126.9 ms ✓ Functors 912.6 ms ✓ SciMLPublic 1083.3 ms ✓ StaticArraysCore 1026.2 ms ✓ MappedArrays 1811.4 ms ✓ KLU 1912.8 ms ✓ PDMats 1548.6 ms ✓ WoodburyMatrices 1197.8 ms ✓ Requires 2424.8 ms ✓ GenericSchur 13683.2 ms ✓ Krylov 1891.8 ms ✓ ProgressMeter 4194.7 ms ✓ StructUtils 41378.8 ms ✓ Unitful 901.2 ms ✓ Scratch 1938.0 ms ✓ CpuId 1162.5 ms ✓ Preferences 3897.1 ms ✓ Compat 3128.1 ms ✓ UnicodeFun 3551.2 ms ✓ PkgVersion 653.3 ms ✓ FunctionWrappersWrappers 2971.2 ms ✓ AbstractFFTs → AbstractFFTsTestExt 3388.1 ms ✓ RuntimeGeneratedFunctions 727.3 ms ✓ TableTraits 851.7 ms ✓ StackViews 918.7 ms ✓ PaddedViews 2815.8 ms ✓ Sparspak 1559.4 ms ✓ FillArrays → FillArraysSparseArraysExt 1121.0 ms ✓ Primes 1751.7 ms ✓ InverseFunctions → InverseFunctionsTestExt 875.0 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1498.5 ms ✓ SignedDistanceFields 6522.6 ms ✓ FixedPointNumbers 4432.6 ms ✓ Distances 1302.0 ms ✓ Statistics → SparseArraysExt 893.8 ms ✓ FillArrays → FillArraysStatisticsExt 1664.3 ms ✓ CommonSubexpressions 3184.6 ms ✓ SimpleTraits 5127.7 ms ✓ ThreadingUtilities 973.4 ms ✓ Parameters 1161.5 ms ✓ SymbolicIndexingInterface 1558.6 ms ✓ LogExpFunctions 797.3 ms ✓ IntervalSets → IntervalSetsRandomExt 807.9 ms ✓ IntervalSets → IntervalSetsStatisticsExt 808.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 955.1 ms ✓ AliasTables 4148.8 ms ✓ Static 807.6 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 824.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3590.2 ms ✓ Missings 825.9 ms ✓ DiffResults 1393.4 ms ✓ FillArrays → FillArraysPDMatsExt 1410.6 ms ✓ AxisAlgorithms 830.1 ms ✓ Ratios 1001.8 ms ✓ Adapt 9651.7 ms ✓ FileIO 857.5 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 1751.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 1735.7 ms ✓ Unitful → NaNMathExt 1767.1 ms ✓ Unitful → InverseFunctionsUnitfulExt 1943.8 ms ✓ Unitful → PrintfExt 1164.7 ms ✓ RelocatableFolders 1368.7 ms ✓ JLLWrappers 1212.4 ms ✓ PrecompileTools 1720.1 ms ✓ TruncatedStacktraces 4652.7 ms ✓ ComputePipeline 912.7 ms ✓ Compat → CompatLinearAlgebraExt 4591.8 ms ✓ Tables 998.2 ms ✓ MosaicViews 2857.2 ms ✓ FFTA 5482.5 ms ✓ ColorTypes 1381.4 ms ✓ Distances → DistancesSparseArraysExt 784.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1505.5 ms ✓ AxisArrays 824.3 ms ✓ BitTwiddlingConvenienceFunctions 3034.7 ms ✓ Setfield 7806.7 ms ✓ Accessors 856.8 ms ✓ Ratios → RatiosFixedPointNumbersExt 4734.6 ms ✓ ArrayInterface 1317.4 ms ✓ GPUArraysCore 993.5 ms ✓ OffsetArrays → OffsetArraysAdaptExt 827.6 ms ✓ EnzymeCore → AdaptExt 1531.5 ms ✓ Graphite2_jll 1464.2 ms ✓ Libmount_jll 1436.2 ms ✓ LLVMOpenMP_jll 1439.7 ms ✓ Bzip2_jll 1550.3 ms ✓ Xorg_libpciaccess_jll 1417.2 ms ✓ Rmath_jll 1484.9 ms ✓ Xorg_libXau_jll 1386.2 ms ✓ libpng_jll 1389.2 ms ✓ libfdk_aac_jll 1428.7 ms ✓ Imath_jll 4448.4 ms ✓ IntelOpenMP_jll 1404.3 ms ✓ Giflib_jll 1378.9 ms ✓ LAME_jll 1386.9 ms ✓ LERC_jll 1367.8 ms ✓ EarCut_jll 1378.6 ms ✓ CRlibm_jll 1420.2 ms ✓ JpegTurbo_jll 1464.0 ms ✓ XZ_jll 1446.6 ms ✓ Ogg_jll 4755.1 ms ✓ oneTBB_jll 1426.0 ms ✓ Xorg_libXdmcp_jll 1398.4 ms ✓ x265_jll 1440.1 ms ✓ x264_jll 1478.8 ms ✓ libaom_jll 1439.7 ms ✓ Zstd_jll 1449.1 ms ✓ Expat_jll 1426.4 ms ✓ Opus_jll 1263.4 ms ✓ Xorg_xtrans_jll 1421.3 ms ✓ Libiconv_jll 1398.1 ms ✓ Libffi_jll 1468.8 ms ✓ isoband_jll 1432.3 ms ✓ OpenSpecFun_jll 1460.1 ms ✓ FriBidi_jll 1442.7 ms ✓ Libuuid_jll 1618.7 ms ✓ OpenBLASConsistentFPCSR_jll 19147.6 ms ✓ StaticArrays 3144.1 ms ✓ RecipesBase 3719.5 ms ✓ StringManipulation 20551.8 ms ✓ Automa 17457.9 ms ✓ SIMD 3281.6 ms ✓ SparseBandedMatrices 4637.0 ms ✓ FindFirstFunctions 15075.9 ms ✓ Parsers 2703.2 ms ✓ CPUSummary 4027.6 ms ✓ DataStructures 2430.0 ms ✓ FilePathsBase 5127.2 ms ✓ ChainRulesCore 4116.8 ms ✓ StructArrays 850.3 ms ✓ StructUtils → StructUtilsTablesExt 6157.4 ms ✓ ColorVectorSpace 1172.9 ms ✓ ColorTypes → StyledStringsExt 9728.3 ms ✓ Colors 1901.2 ms ✓ HostCPUFeatures 2295.6 ms ✓ Accessors → LinearAlgebraExt 2222.6 ms ✓ Accessors → TestExt 2475.1 ms ✓ Accessors → IntervalSetsExt 2116.2 ms ✓ Accessors → UnitfulExt 9611.5 ms ✓ StaticArrayInterface 1308.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1407.9 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1451.3 ms ✓ Pixman_jll 1434.3 ms ✓ FreeType2_jll 1575.4 ms ✓ libdrm_jll 1586.4 ms ✓ Rmath 1411.2 ms ✓ OpenEXR_jll 1302.1 ms ✓ CRlibm 1419.0 ms ✓ libsixel_jll 1380.4 ms ✓ libvorbis_jll 7345.9 ms ✓ MKL_jll 1462.3 ms ✓ Xorg_libxcb_jll 1931.8 ms ✓ CodecZstd 1621.7 ms ✓ Libtiff_jll 1577.4 ms ✓ GettextRuntime_jll 952.5 ms ✓ Isoband 5883.6 ms ✓ SpecialFunctions 6785.8 ms ✓ ArnoldiMethod 1430.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1678.5 ms ✓ FillArrays → FillArraysStaticArraysExt 1429.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1462.9 ms ✓ Adapt → AdaptStaticArraysExt 1948.4 ms ✓ Accessors → StaticArraysExt 27977.7 ms ✓ GeometryBasics 1336.8 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 35009.7 ms ✓ PrettyTables 9350.8 ms ✓ JSON 1758.0 ms ✓ PolyesterWeave 1597.1 ms ✓ SortingAlgorithms 5305.2 ms ✓ QuadGK 1300.9 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3129.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 1553.9 ms ✓ FilePaths 4046.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2501.8 ms ✓ ZygoteRules 922.8 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 910.2 ms ✓ Distances → DistancesChainRulesCoreExt 3335.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4124.2 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 919.6 ms ✓ StructArrays → StructArraysAdaptExt 1454.0 ms ✓ StructArrays → StructArraysSparseArraysExt 4311.7 ms ✓ StructArrays → StructArraysStaticArraysExt 856.8 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1090.9 ms ✓ Accessors → StructArraysExt 5622.7 ms ✓ QOI 4027.4 ms ✓ Graphics 1270.1 ms ✓ Animations 38157.2 ms ✓ ImageCore 8361.1 ms ✓ ColorSchemes 7741.8 ms ✓ SciMLOperators 2325.7 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1748.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1721.8 ms ✓ CloseOpenIntervals 1941.3 ms ✓ LayoutPointers 1904.2 ms ✓ FiniteDiff 40080.8 ms ✓ ExponentialUtilities 3244.7 ms ✓ RecursiveArrayTools 1853.9 ms ✓ FreeType 1584.4 ms ✓ Fontconfig_jll 5406.8 ms ✓ OpenEXR 8207.9 ms ✓ IntervalArithmetic 17418.9 ms ✓ MKL 1487.4 ms ✓ Xorg_libX11_jll 65703.2 ms ✓ TiffImages 1589.3 ms ✓ Glib_jll 4326.3 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2297.5 ms ✓ HypergeometricFunctions 1435.9 ms ✓ DiffRules 1287.0 ms ✓ ColorVectorSpace → SpecialFunctionsExt 13879.7 ms ✓ Graphs 15579.6 ms ✓ GridLayoutBase 2623.8 ms ✓ GeometryBasics → IntervalSetsExt 2926.1 ms ✓ Packing 6197.1 ms ✓ ShaderAbstractions 4189.5 ms ✓ ColorBrewer 8315.6 ms ✓ StatsBase 7434.5 ms ✓ Interpolations 4087.3 ms ✓ ImageBase 5212.5 ms ✓ PNGFiles 8840.4 ms ✓ Sixel 10921.3 ms ✓ JpegTurbo 19699.0 ms ✓ PlotUtils 1858.2 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1707.5 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 19692.2 ms ✓ VectorizationBase 2206.0 ms ✓ StrideArraysCore 992.1 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1549.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 3495.2 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 6248.3 ms ✓ FreeTypeAbstraction 1134.8 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 951.2 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1204.6 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1236.5 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1087.5 ms ✓ Xorg_libXrender_jll 1222.7 ms ✓ Xorg_libXext_jll 1276.1 ms ✓ Xorg_libXfixes_jll 4540.3 ms ✓ StatsFuns 9358.9 ms ✓ ForwardDiff 788.6 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 2523.0 ms ✓ VertexSafeGraphs 1835.3 ms ✓ PDMats → StatsBaseExt 2672.3 ms ✓ Interpolations → InterpolationsUnitfulExt 2354.8 ms ✓ XTermColors 4949.0 ms ✓ ImageAxes 13528.7 ms ✓ SciMLBase 4927.4 ms ✓ SLEEFPirates 2196.7 ms ✓ Polyester 29398.2 ms ✓ MathTeXEngine 8636.3 ms ✓ ExactPredicates 1677.2 ms ✓ Libglvnd_jll 1627.2 ms ✓ Cairo_jll 1446.0 ms ✓ libva_jll 1372.4 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3892.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 3778.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2176.6 ms ✓ Unitful → ForwardDiffExt 5086.4 ms ✓ PreallocationTools 12065.5 ms ✓ DataInterpolations 5332.0 ms ✓ NLSolversBase 4072.4 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt 2893.6 ms ✓ Interpolations → InterpolationsForwardDiffExt 10228.7 ms ✓ Distributions 10347.3 ms ✓ ReferenceTests 3580.5 ms ✓ ImageMetadata 3295.1 ms ✓ FiniteVolumeMethod1D 3004.6 ms ✓ MovingBoundaryProblems1D 5980.9 ms ✓ VectorizedRNG 37660.5 ms ✓ LoopVectorization 1950.6 ms ✓ FastBroadcast 9728.0 ms ✓ DelaunayTriangulation 1166.8 ms ✓ libwebp_jll 1291.1 ms ✓ HarfBuzz_jll 9193.3 ms ✓ SparseDiffTools 1730.4 ms ✓ DataInterpolations → DataInterpolationsChainRulesCoreExt 6556.3 ms ✓ LineSearches 3220.7 ms ✓ Distributions → DistributionsTestExt 6456.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 6810.0 ms ✓ Netpbm 4665.5 ms ✓ VectorizedRNG → VectorizedRNGStaticArraysExt 5592.4 ms ✓ LoopVectorization → SpecialFunctionsExt 8732.0 ms ✓ LoopVectorization → ForwardDiffExt 19232.6 ms ✓ TriangularSolve 32683.6 ms ✓ DiffEqBase 7829.9 ms ✓ WebP 1494.3 ms ✓ libass_jll 1539.6 ms ✓ Pango_jll 4199.1 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 5455.7 ms ✓ NLsolve 4385.4 ms ✓ KernelDensity 48367.1 ms ✓ RecursiveFactorization 6960.2 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 4928.7 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 14135.5 ms ✓ SimpleNonlinearSolve 4817.0 ms ✓ ImageIO 1660.7 ms ✓ FFMPEG_jll 5150.8 ms ✓ Cairo 6829.4 ms ✓ SciMLNLSolve 8646.6 ms ✓ DiffEqCallbacks 75318.9 ms ✓ LinearSolve 438966.9 ms ✓ Makie 8328.7 ms ✓ EpithelialDynamics1D 7184.5 ms ✓ SteadyStateDiffEq 11460.7 ms ✓ LinearSolve → LinearSolveRecursiveArrayToolsExt 325617.8 ms ✓ CairoMakie 92129.4 ms ✓ NonlinearSolve ✗ OrdinaryDiffEq 364 dependencies successfully precompiled in 2577 seconds. 42 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 263 dependents of these packages may trigger further precompilation to work with the unexpected versions. 2 dependencies had output during precompilation: ┌ MKL │ Downloading artifact: MKL └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ERROR: LoadError: The following 1 direct dependency failed to precompile: OrdinaryDiffEq Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/home/pkgeval/.julia/compiled/v1.12/OrdinaryDiffEq/jl_n1IPSc". ERROR: LoadError: UndefVarError: `tmp` not defined in `OrdinaryDiffEq` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] perform_step!(integrator::OrdinaryDiffEq.ODEIntegrator{OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, true, Vector{Float64}, Nothing, Float64, SciMLBase.NullParameters, Float64, Float64, Float64, Float64, Vector{Vector{Float64}}, SciMLBase.ODESolution{Float64, 2, Vector{Vector{Float64}}, Nothing, Nothing, Vector{Float64}, Vector{Vector{Vector{Float64}}}, SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, SciMLBase.NullParameters, SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, @Kwargs{}, SciMLBase.StandardODEProblem}, OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, OrdinaryDiffEq.InterpolationData{SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, Vector{Vector{Float64}}, Vector{Float64}, Vector{Vector{Vector{Float64}}}, OrdinaryDiffEq.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}}, DiffEqBase.Stats, Nothing}, SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, OrdinaryDiffEq.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, OrdinaryDiffEq.DEOptions{Float64, Float64, Float64, Float64, OrdinaryDiffEq.PIController{Rational{Int64}}, typeof(DiffEqBase.ODE_DEFAULT_NORM), typeof(LinearAlgebra.opnorm), Nothing, SciMLBase.CallbackSet{Tuple{}, Tuple{}}, typeof(DiffEqBase.ODE_DEFAULT_ISOUTOFDOMAIN), typeof(DiffEqBase.ODE_DEFAULT_PROG_MESSAGE), typeof(DiffEqBase.ODE_DEFAULT_UNSTABLE_CHECK), DataStructures.BinaryHeap{Float64, DataStructures.FasterForward}, DataStructures.BinaryHeap{Float64, DataStructures.FasterForward}, Nothing, Nothing, Int64, Tuple{}, Tuple{}, Tuple{}}, Vector{Float64}, Float64, Nothing, OrdinaryDiffEq.DefaultInit}, cache::OrdinaryDiffEq.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, repeat_step::Bool) @ OrdinaryDiffEq ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/perform_step/low_order_rk_perform_step.jl:804 [2] perform_step! @ ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/perform_step/low_order_rk_perform_step.jl:798 [inlined] [3] solve!(integrator::OrdinaryDiffEq.ODEIntegrator{OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, true, Vector{Float64}, Nothing, Float64, SciMLBase.NullParameters, Float64, Float64, Float64, Float64, Vector{Vector{Float64}}, SciMLBase.ODESolution{Float64, 2, Vector{Vector{Float64}}, Nothing, Nothing, Vector{Float64}, Vector{Vector{Vector{Float64}}}, SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, SciMLBase.NullParameters, SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, @Kwargs{}, SciMLBase.StandardODEProblem}, OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, OrdinaryDiffEq.InterpolationData{SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, Vector{Vector{Float64}}, Vector{Float64}, Vector{Vector{Vector{Float64}}}, OrdinaryDiffEq.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}}, DiffEqBase.Stats, Nothing}, SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, FunctionWrappersWrappers.FunctionWrappersWrapper{Tuple{FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{Float64}, Vector{Float64}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, Float64}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{Float64}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}, FunctionWrappers.FunctionWrapper{Nothing, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}, SciMLBase.NullParameters, ForwardDiff.Dual{ForwardDiff.Tag{DiffEqBase.OrdinaryDiffEqTag, Float64}, Float64, 1}}}}, false}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, OrdinaryDiffEq.Tsit5Cache{Vector{Float64}, Vector{Float64}, Vector{Float64}, typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}, OrdinaryDiffEq.DEOptions{Float64, Float64, Float64, Float64, OrdinaryDiffEq.PIController{Rational{Int64}}, typeof(DiffEqBase.ODE_DEFAULT_NORM), typeof(LinearAlgebra.opnorm), Nothing, SciMLBase.CallbackSet{Tuple{}, Tuple{}}, typeof(DiffEqBase.ODE_DEFAULT_ISOUTOFDOMAIN), typeof(DiffEqBase.ODE_DEFAULT_PROG_MESSAGE), typeof(DiffEqBase.ODE_DEFAULT_UNSTABLE_CHECK), DataStructures.BinaryHeap{Float64, DataStructures.FasterForward}, DataStructures.BinaryHeap{Float64, DataStructures.FasterForward}, Nothing, Nothing, Int64, Tuple{}, Tuple{}, Tuple{}}, Vector{Float64}, Float64, Nothing, OrdinaryDiffEq.DefaultInit}) @ OrdinaryDiffEq ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/solve.jl:528 [4] #__solve#552 @ ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/solve.jl:6 [inlined] [5] __solve @ ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/solve.jl:1 [inlined] [6] #solve_call#32 @ ~/.julia/packages/DiffEqBase/s433k/src/solve.jl:559 [inlined] [7] solve_call @ ~/.julia/packages/DiffEqBase/s433k/src/solve.jl:529 [inlined] [8] solve_up(prob::SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, SciMLBase.NullParameters, SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, OrdinaryDiffEq.var"#lorenz#lorenz##0", LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, @Kwargs{}, SciMLBase.StandardODEProblem}, sensealg::Nothing, u0::Vector{Float64}, p::SciMLBase.NullParameters, args::OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}; kwargs::@Kwargs{}) @ DiffEqBase ~/.julia/packages/DiffEqBase/s433k/src/solve.jl:1020 [9] solve_up @ ~/.julia/packages/DiffEqBase/s433k/src/solve.jl:993 [inlined] [10] #solve#39 @ ~/.julia/packages/DiffEqBase/s433k/src/solve.jl:930 [inlined] [11] solve(prob::SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, SciMLBase.NullParameters, SciMLBase.ODEFunction{true, SciMLBase.AutoSpecialize, OrdinaryDiffEq.var"#lorenz#lorenz##0", LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing}, @Kwargs{}, SciMLBase.StandardODEProblem}, args::OrdinaryDiffEq.Tsit5{typeof(OrdinaryDiffEq.trivial_limiter!), typeof(OrdinaryDiffEq.trivial_limiter!), Static.False}) @ DiffEqBase ~/.julia/packages/DiffEqBase/s433k/src/solve.jl:920 [12] top-level scope @ ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/OrdinaryDiffEq.jl:237 [13] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [14] macro expansion @ ~/.julia/packages/OrdinaryDiffEq/FFFcA/src/OrdinaryDiffEq.jl:326 [inlined] [15] include(mod::Module, _path::String) @ Base ./Base.jl:306 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [17] top-level scope @ stdin:5 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [20] include_string @ ./loading.jl:2883 [inlined] [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [22] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEq/FFFcA/src/OrdinaryDiffEq.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 2617.02s ################################################################################ # Testing # Testing EpithelialDynamics1D Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_Vm5pBy/Project.toml` [13f3f980] + CairoMakie v0.15.11 ⌃ [38540f10] ↓ CommonSolve v0.2.7 ⇒ v0.2.6 ⌅ [459566f4] ↓ DiffEqCallbacks v2.36.1 ⇒ v2.35.0 [ace8a2d7] + EpithelialDynamics1D v1.8.3 ⌅ [7ed4a6bd] + LinearSolve v2.16.2 ⌃ [1dea7af3] + OrdinaryDiffEq v6.58.2 [324d217c] + ReferenceTests v0.10.6 [1bc83da4] + SafeTestsets v0.1.0 [860ef19b] + StableRNGs v1.0.4 ⌃ [9672c7b4] + SteadyStateDiffEq v1.16.1 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_Vm5pBy/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [35492f91] + AdaptivePredicates v1.2.0 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [67c07d97] + Automa v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.11 [6b39b394] + CodecZstd v0.8.7 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 ⌃ [38540f10] ↓ CommonSolve v0.2.7 ⇒ v0.2.6 [95dc2771] + ComputePipeline v0.1.8 [2569d6c7] + ConcreteStructs v0.2.4 [d38c429a] + Contour v0.6.3 [ab62b9b5] + DeepDiffs v1.2.0 [927a84f5] + DelaunayTriangulation v1.6.6 ⌅ [459566f4] ↓ DiffEqCallbacks v2.36.1 ⇒ v2.35.0 [31c24e10] + Distributions v0.25.127 ⌅ [f151be2c] + EnzymeCore v0.6.6 [ace8a2d7] + EpithelialDynamics1D v1.8.3 [429591f6] + ExactPredicates v2.2.9 [d4d017d3] + ExponentialUtilities v1.30.0 [b86e33f2] + FFTA v0.3.1 [9aa1b823] + FastClosures v0.3.2 [29a986be] + FastLapackInterface v2.1.1 [5789e2e9] + FileIO v1.19.0 [8fc22ac5] + FilePaths v0.9.0 [48062228] + FilePathsBase v0.9.24 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [c145ed77] + GenericSchur v0.5.6 [5c1252a2] + GeometryBasics v0.5.11 [a2bd30eb] + Graphics v1.1.3 ⌃ [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [3e5b6fbb] + HostCPUFeatures v0.1.18 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.3 ⌃ [d1acc4aa] + IntervalArithmetic v0.22.36 [8197267c] + IntervalSets v0.7.14 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [682c06a0] + JSON v1.6.1 [b835a17e] + JpegTurbo v0.1.6 ⌅ [ef3ab10e] + KLU v0.4.1 [5ab0869b] + KernelDensity v0.6.12 ⌅ [ba0b0d4f] + Krylov v0.9.10 [8cdb02fc] + LazyModules v0.3.1 ⌅ [7ed4a6bd] + LinearSolve v2.16.2 [bdcacae8] + LoopVectorization v0.12.174 ⌅ [33e6dc65] + MKL v0.6.3 [ee78f7c6] + Makie v0.24.11 [dbb5928d] + MappedArrays v0.4.3 [0a4f8689] + MathTeXEngine v0.6.9 [e94cdb99] + MosaicViews v0.3.4 [f09324ee] + Netpbm 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v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [8bf52ea8] + CRC32c v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [3fa0cd96] + REPL v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Vm5pBy/Project.toml` [13f3f980] CairoMakie v0.15.11 ⌃ [38540f10] CommonSolve v0.2.6 ⌅ [82cc6244] DataInterpolations v4.8.0 ⌅ [459566f4] DiffEqCallbacks v2.35.0 [ace8a2d7] EpithelialDynamics1D v1.8.3 ⌃ [cfdabe9e] FiniteVolumeMethod1D v1.1.3 ⌅ [f6369f11] ForwardDiff v0.10.39 ⌅ [7ed4a6bd] LinearSolve v2.16.2 [a903a81a] MovingBoundaryProblems1D v1.0.3 ⌃ [1dea7af3] OrdinaryDiffEq v6.58.2 [324d217c] ReferenceTests v0.10.6 [1bc83da4] SafeTestsets v0.1.0 ⌅ [0bca4576] SciMLBase v1.98.1 [860ef19b] StableRNGs v1.0.4 [2913bbd2] StatsBase v0.34.12 ⌃ [9672c7b4] SteadyStateDiffEq v1.16.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Vm5pBy/Manifest.toml` ⌅ [47edcb42] ADTypes v0.2.7 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 ⌅ [79e6a3ab] Adapt v3.7.2 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 ⌃ [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.11 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [6b39b394] CodecZstd v0.8.7 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 ⌃ [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.8 [2569d6c7] ConcreteStructs v0.2.4 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 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v0.5.6+0 [91d4177d] Opus_jll v1.6.1+0 [36c8627f] Pango_jll v1.57.1+0 [30392449] Pixman_jll v0.46.4+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.3+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.13.3+0 [0ac62f75] libass_jll v0.17.4+0 [8e53e030] libdrm_jll v2.4.125+1 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.58+0 [075b6546] libsixel_jll v1.10.5+0 [9a156e7d] libva_jll v2.23.0+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.3.0+0 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Problem | 13 13 1.1s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1841 running 1 of 1 signal (10): User defined signal 1 _ZN12_GLOBAL__N_19AsmParserD2Ev at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_19AsmParserD0Ev at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZNK4llvm10AsmPrinter13emitInlineAsmEPKNS_12MachineInstrE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm10AsmPrinter16emitFunctionBodyEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13X86AsmPrinter20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1561 addModule at /source/src/jitlayers.cpp:2044 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _precompilepkgs at ./precompilation.jl:733 #precompilepkgs#9 at ./precompilation.jl:520 unknown function (ip: 0x758bbe131942) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 precompilepkgs at ./precompilation.jl:506 __require_prelocked at ./loading.jl:2660 _require_prelocked at ./loading.jl:2494 macro expansion at ./loading.jl:2422 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2387 jfptr___require_72496.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 require at ./loading.jl:2363 jfptr_require_35976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] call_require at /source/src/toplevel.c:494 [inlined] eval_import_path at /source/src/toplevel.c:532 jl_toplevel_eval_flex at /source/src/toplevel.c:830 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 jfptr_eval_12694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x758bbf6f2249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x70fd88993193) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x70fd889884cc) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x70fd88981f49) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x70fd889814a1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x70fd88980fa0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x70fd88976e4f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70fda32d2249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000070fd889fc010 Total snapshots: 367. Utilization: 0% ╎367 @Base/client.jl:550 _start() ╎ 367 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 367 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 367 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 367 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 367 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 367 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 367 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 367 @Pkg/src/API.jl:157 test ╎ ╎ 367 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 367 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 367 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 367 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 367 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 367 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 367 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 367 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 367 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 367 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 367 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 367 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 367 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 367 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 367 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 367 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 367 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 367 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 367 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 367 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 367 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 367 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 367 @Base/…sk.jl:1228 wait() 366╎ ╎ ╎ ╎ ╎ ╎ ╎ 367 @Base/…sk.jl:1216 poptask(W::Base.Intr… ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 PrecompilingOverhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000758ba6c3ce20 Total snapshots: 1. Utilization: 100% ╎1 @Base/precompilation.jl:1040 (::Base.Precompilation.var"#_precompilepkgs##… ╎ 1 @Base/loading.jl:1902 isprecompiled ╎ 1 @Base/loading.jl:1909 #isprecompiled#900 ╎ 1 @Base/loading.jl:1845 compilecache_path ╎ 1 @Base/loading.jl:1867 compilecache_path(pkg::Base.PkgId; ignore_loaded… ╎ 1 @Base/dict.jl:458 get!(default::Base.var"#898#899"{Bool, Base.CacheFl… ╎ ╎ 1 @Base/loading.jl:1867 #898 ╎ ╎ 1 @Base/loading.jl:3970 stale_cachefile ╎ ╎ 1 @Base/loading.jl:4130 stale_cachefile(modkey::Base.PkgId, build_id… ╎ ╎ 1 @Base/loading.jl:3357 isvalid_file_crc ╎ ╎ 1 @Base/util.jl:520 _crc32c ╎ ╎ ╎ 1 @Base/util.jl:525 _crc32c(io::IOStream, nb::Int64, crc::UInt32) ╎ ╎ ╎ 1 @Base/iostream.jl:565 readbytes! ╎ ╎ ╎ 1 @Base/iostream.jl:565 readbytes! ╎ ╎ ╎ 1 @Base/iostream.jl:566 #readbytes!#664 ╎ ╎ ╎ 1 @Base/iostream.jl:523 readbytes_all!(s::IOStream, b::Vector… packages... [1841] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EpithelialDynamics1D/L1Pzd/test/equations.jl:1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 35280116 (Pool: 35279167; Big: 949); GC: 34 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 [inlined] success at ./process.jl:555 jfptr_success_6905.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #compilecache#914 at ./loading.jl:3236 compilecache at ./loading.jl:3192 [inlined] #_precompilepkgs##36 at ./precompilation.jl:1075 with_logstate at ./logging/logging.jl:542 with_logger at ./logging/logging.jl:653 [inlined] #_precompilepkgs##34 at ./precompilation.jl:1069 [inlined] #mkpidlock#8 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 jfptr_YY.mkpidlockYY.8_49511.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 #mkpidlock#7 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 jfptr_mkpidlock_68876.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #trymkpidlock#13 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 trymkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:115 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 #invokelatest_gr#239 at ./reflection.jl:1297 [inlined] invokelatest_gr at ./reflection.jl:1289 [inlined] precompile_pkgs_maybe_cachefile_lock at ./precompilation.jl:1310 macro expansion at ./timing.jl:461 [inlined] #_precompilepkgs##30 at ./precompilation.jl:1068 jfptr_YY._precompilepkgsYY.YY.30_3976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 4834165 (Pool: 4834003; Big: 162); GC: 7 PkgEval terminated after 2727.62s: test duration exceeded the time limit