Package evaluation to test EcoBase on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T10:28:34.593 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.08s ################################################################################ # Installation # Installing EcoBase... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [a58aae7d] + EcoBase v0.1.7 Updating `~/.julia/environments/v1.12/Manifest.toml` [a58aae7d] + EcoBase v0.1.7 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [3cdcf5f2] + RecipesBase v1.3.4 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Installation completed after 1.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 17836.8 ms ✓ CommonMark 1368.5 ms ✓ EcoBase 2882.3 ms ✓ RandomBooleanMatrices 159648.4 ms ✓ DataFramesMeta 4239.8 ms ✓ ResearchSoftwareMetadata 49225.5 ms ✓ JuliaFormatter 157373.2 ms ✓ Diversity 34937.2 ms ✓ SpatialEcology 8 dependencies successfully precompiled in 429 seconds. 105 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 48 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 447.25s ################################################################################ # Testing # Testing EcoBase Status `/tmp/jl_8hKRsl/Project.toml` [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [d7ba0133] Git v1.5.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.6 [348f2d5d] SpatialEcology v0.9.17 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_8hKRsl/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [d1d4a3ce] BitFlags v0.1.10 [00ebfdb7] CSTParser v3.5.0 [8be319e6] Chain v1.0.0 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [1313f7d8] DataFramesMeta v0.15.6 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.5 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.5.0 ⌅ [cd3eb016] HTTP v1.11.0 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.10 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [43287f4e] PtrArrays v1.4.0 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [58378933] ResearchSoftwareMetadata v0.1.6 [91c51154] SentinelArrays v1.4.10 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [348f2d5d] SpatialEcology v0.9.17 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [9ce81f87] TableMetadataTools v0.1.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.28.0 [ddb6d928] YAML v0.4.16 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Potentially missing tests: - DataTypes.jl - EcoBase.jl - PlotRecipes.jl [ Info: Running tests for files: = Interface.jl [ Info: Running tests... * Testing Interface.jl ... Test Summary: | Pass Total Time EcoBase.jl | 23 23 42.0s [ Info: Crosswalk and clean testing: = JuliaFormatter = ResearchSoftwareMetadata * Verifying JuliaFormatter.jl ... Precompiling packages... 18448.5 ms ✓ CommonMark 48182.0 ms ✓ JuliaFormatter 2 dependencies successfully precompiled in 67 seconds. 20 already precompiled. 17 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, Crayons, DataStructures, Dates, InteractiveUtils, JuliaSyntaxHighlighting, Markdown, OrderedCollections, PrecompileTools, Preferences, Printf, StyledStrings, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). JuliaFormatter: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin/git rev-parse --show-toplevel`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/cbc69e6685959a713544a0b78531d49cb0ef8154/bin:/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin:/home/pkgeval/.julia/artifacts/0b9f3ad369a4ec650408069c7d6794c14a3c815c/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/libexec/git-core", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/4b211894da5431bad5044e4237ea99ec8fc0794b/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_8hKRsl", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/share/git-core/templates", "PKGEVAL=true", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:597 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:481 [3] read @ ./process.jl:490 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1138 [5] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [7] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_JuliaFormatter.jl:33 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [9] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [13] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [18] _start() @ Base ./client.jl:550 * Verifying ResearchSoftwareMetadata.jl ... Precompiling packages... 4292.0 ms ✓ ResearchSoftwareMetadata 1 dependency successfully precompiled in 4 seconds. 51 already precompiled. 34 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, DataStructures, Dates, Expat_jll, Git, Git_LFS_jll, Git_jll, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LibCURL_jll, LibSSH2_jll, Libiconv_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSH_jll, OpenSSL_jll, OrderedCollections, PCRE2_jll, PrecompileTools, Preferences, Printf, Serialization, StyledStrings, TOML, Test, UUIDs, Unicode, Zlib_jll and nghttp2_jll). Restart julia to access the new versions. Otherwise, 14 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4547.7 ms ✓ InlineStrings → ParsersExt 1 dependency successfully precompiled in 5 seconds. 9 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Dates, InlineStrings, Parsers, PrecompileTools, Preferences, Printf, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 931.3 ms ✓ StructUtils → StructUtilsTablesExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. 11 dependencies precompiled but different versions are currently loaded (DataAPI, DataValueInterfaces, Dates, IteratorInterfaceExtensions, OrderedCollections, Printf, StructUtils, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). RSMD: Error During Test at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin/git rev-parse --show-toplevel`,["PYTHON=", "PATH=/home/pkgeval/.julia/artifacts/cbc69e6685959a713544a0b78531d49cb0ef8154/bin:/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin:/home/pkgeval/.julia/artifacts/0b9f3ad369a4ec650408069c7d6794c14a3c815c/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/libexec/git-core", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/4b211894da5431bad5044e4237ea99ec8fc0794b/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "OPENBLAS_NUM_THREADS=1", "CI=true", "R_HOME=*", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_LOAD_PATH=@:/tmp/jl_8hKRsl", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/share/git-core/templates", "PKGEVAL=true", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "HOME=/home/pkgeval", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "OPENBLAS_MAIN_FREE=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:597 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:481 [3] read @ ./process.jl:490 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1138 [5] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [7] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/clean_ResearchSoftwareMetadata.jl:33 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [9] top-level scope @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:102 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [11] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:107 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [13] macro expansion @ ~/.julia/packages/EcoBase/sGVHP/test/runtests.jl:110 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [18] _start() @ Base ./client.jl:550 Test Summary: | Error Total Time test set | 2 2 1m32.9s c = JuliaFormatter | 1 1 1m18.3s JuliaFormatter | 1 1 9.1s c = ResearchSoftwareMetadata | 1 1 14.6s RSMD | 1 1 1.6s RNG of the outermost testset: Xoshiro(0x9951797c85a704f1, 0xb9d66be14dfba82b, 0xb170153285fd9556, 0xe90a07f7bdd1fd77, 0x9d4b5ee33e4bd661) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EcoBase/sGVHP/test/runtests.jl:91 Testing failed after 155.94s ERROR: LoadError: Package EcoBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 629.28s: package tests unexpectedly errored