Package evaluation to test Diversity on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T15:58:46.214 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.53s ################################################################################ # Installation # Installing Diversity... Resolving package versions... Installed DataAPI ───────────────────── v1.16.0 Installed TableTraits ───────────────── v1.0.1 Installed Crayons ───────────────────── v4.1.1 Installed SentinelArrays ────────────── v1.4.10 Installed PooledArrays ──────────────── v1.4.3 Installed Tables ────────────────────── v1.12.1 Installed DataValueInterfaces ───────── v1.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Preferences ───────────────── v1.5.2 Installed OrderedCollections ────────── v1.8.2 Installed InlineStrings ─────────────── v1.4.5 Installed LaTeXStrings ──────────────── v1.4.0 Installed InvertedIndices ───────────── v1.3.1 Installed Reexport ──────────────────── v1.2.2 Installed PrettyTables ──────────────── v3.3.2 Installed PrecompileTools ───────────── v1.3.4 Installed Statistics ────────────────── v1.11.1 Installed Missings ──────────────────── v1.2.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed DataStructures ────────────── v0.19.5 Installed Compat ────────────────────── v4.18.1 Installed StringManipulation ────────── v0.4.4 Installed Diversity ─────────────────── v0.5.15 Installed EcoBase ───────────────────── v0.1.7 Installed DataFrames ────────────────── v1.8.2 Updating `~/.julia/environments/v1.12/Project.toml` [d3d5718d] + Diversity v0.5.15 Updating `~/.julia/environments/v1.12/Manifest.toml` [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [d3d5718d] + Diversity v0.5.15 [a58aae7d] + EcoBase v0.1.7 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.10 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4311.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 965.9 ms ✓ RangeArrays 783.7 ms ✓ Chain 828.8 ms ✓ LaTeXStrings 989.2 ms ✓ Glob 727.5 ms ✓ IteratorInterfaceExtensions 1015.5 ms ✓ WorkerUtilities 850.3 ms ✓ StatsAPI 2244.1 ms ✓ FillArrays 1096.5 ms ✓ Statistics 1150.6 ms ✓ IterTools 7469.8 ms ✓ MacroTools 1654.2 ms ✓ RandomNumbers 936.3 ms ✓ WinReg 856.3 ms ✓ ShiftedArrays 4326.8 ms ✓ OrderedCollections 3736.2 ms ✓ AutoHashEquals 758.5 ms ✓ DataValueInterfaces 758.3 ms ✓ Reexport 1111.1 ms ✓ DocStringExtensions 3900.1 ms ✓ Tokenize 1773.7 ms ✓ InlineStrings 5061.9 ms ✓ IrrationalConstants 1040.1 ms ✓ IntervalSets 1247.2 ms ✓ URIs 770.1 ms ✓ SimpleBufferStream 813.6 ms ✓ PtrArrays 1251.6 ms ✓ TranscodingStreams 830.0 ms ✓ InvertedIndices 1012.0 ms ✓ Inflate 926.7 ms ✓ DataAPI 4711.6 ms ✓ Crayons 877.1 ms ✓ BitFlags 980.1 ms ✓ StaticArraysCore 1711.5 ms ✓ ConcurrentUtilities 1893.3 ms ✓ PDMats 1193.8 ms ✓ Requires 2079.4 ms ✓ SentinelArrays 41355.0 ms ✓ Unitful 1076.0 ms ✓ LoggingExtras 4029.2 ms ✓ Compat 1338.8 ms ✓ JLLWrappers 1652.2 ms ✓ ExceptionUnwrapping 3159.0 ms ✓ RecipesBase 3542.4 ms ✓ StringManipulation 728.1 ms ✓ TableTraits 1545.6 ms ✓ FillArrays → FillArraysSparseArraysExt 4367.9 ms ✓ Distances 1395.9 ms ✓ Statistics → SparseArraysExt 907.6 ms ✓ FillArrays → FillArraysStatisticsExt 3136.9 ms ✓ SimpleTraits 5991.0 ms ✓ ParserCombinator 10027.6 ms ✓ DataValues 7075.2 ms ✓ CSTParser 960.5 ms ✓ InlineStrings → ParsersExt 1337.8 ms ✓ LogExpFunctions 789.5 ms ✓ IntervalSets → IntervalSetsRandomExt 812.4 ms ✓ IntervalSets → IntervalSetsStatisticsExt 960.4 ms ✓ AliasTables 935.1 ms ✓ CodecZlib 1124.5 ms ✓ PooledArrays 4072.4 ms ✓ Missings 17349.9 ms ✓ CommonMark 4773.2 ms ✓ OpenSSL 836.1 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 17888.3 ms ✓ StaticArrays 1459.8 ms ✓ FillArrays → FillArraysPDMatsExt 1964.9 ms ✓ Unitful → PrintfExt 895.1 ms ✓ Compat → CompatLinearAlgebraExt 1423.0 ms ✓ Rmath_jll 1418.4 ms ✓ MbedTLS_jll 1402.0 ms ✓ Expat_jll 1475.9 ms ✓ OpenSSH_jll 1422.6 ms ✓ Libiconv_jll 1405.1 ms ✓ Git_LFS_jll 1420.3 ms ✓ OpenSpecFun_jll 1423.6 ms ✓ EcoBase 1357.1 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 4631.0 ms ✓ Tables 1376.3 ms ✓ Distances → DistancesSparseArraysExt 2341.2 ms ✓ WeakRefStrings 1603.0 ms ✓ AxisArrays 1194.2 ms ✓ TableTraitsUtils 6976.8 ms ✓ ArnoldiMethod 1385.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1495.9 ms ✓ FillArrays → FillArraysStaticArraysExt 4072.7 ms ✓ DataStructures 2468.2 ms ✓ FilePathsBase 5989.1 ms ✓ CategoricalArrays 1611.0 ms ✓ Rmath 2208.2 ms ✓ MbedTLS 1133.7 ms ✓ StringEncodings 1439.7 ms ✓ Git_jll 6061.5 ms ✓ SpecialFunctions 1121.6 ms ✓ StructUtils → StructUtilsTablesExt 2237.4 ms ✓ TableMetadataTools 49450.6 ms ✓ PrettyTables 158022.9 ms ✓ RCall → RCallAxisArraysExt 1187.8 ms ✓ IterableTables 1832.7 ms ✓ SortingAlgorithms 5559.2 ms ✓ QuadGK 50121.8 ms ✓ JuliaFormatter 13851.3 ms ✓ Graphs 1373.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3365.0 ms ✓ FilePathsBase → FilePathsBaseTestExt 1227.2 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 3972.0 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1060.6 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 33991.9 ms ✓ HTTP 5133.4 ms ✓ YAML 899.8 ms ✓ Git 2209.0 ms ✓ HypergeometricFunctions 8434.0 ms ✓ StatsBase 95782.5 ms ✓ DataFrames 30712.4 ms ✓ CSV 4391.6 ms ✓ ResearchSoftwareMetadata 5216.4 ms ✓ StatsFuns 2961.2 ms ✓ RandomBooleanMatrices 2205.2 ms ✓ PDMats → StatsBaseExt 2331.0 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 8477.8 ms ✓ Diversity 9923.3 ms ✓ DataFramesMeta 4214.2 ms ✓ StatsModels 10842.0 ms ✓ Distributions 6678.7 ms ✓ Diversity → DiversityAxisArraysExt 12148.3 ms ✓ SpatialEcology 3474.3 ms ✓ Distributions → DistributionsTestExt 22303.6 ms ✓ Phylo 60041.9 ms ✓ Phylo → PhyloRCallExt 24096.5 ms ✓ Diversity → DiversityPhyloExt 129 dependencies successfully precompiled in 922 seconds. 47 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 90 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 1050.06s ################################################################################ # Testing # Testing Diversity Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_R7ITIl/Project.toml` [39de3d68] + AxisArrays v0.4.8 [336ed68f] + CSV v0.10.16 [b4f34e82] + Distances v0.10.12 [d3d5718d] + Diversity v0.5.15 [d7ba0133] + Git v1.5.0 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [aea672f4] + Phylo v0.5.4 [6f49c342] + RCall v0.14.13 [58378933] + ResearchSoftwareMetadata v0.1.6 [348f2d5d] + SpatialEcology v0.9.17 [2913bbd2] + StatsBase v0.34.12 [56ddb016] ~ Logging ⇒ v1.11.0 [44cfe95a] ~ Pkg ⇒ v1.12.1 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_R7ITIl/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [15f4f7f2] + AutoHashEquals v2.2.0 [39de3d68] + AxisArrays v0.4.8 [d1d4a3ce] + BitFlags v0.1.10 [00ebfdb7] + CSTParser v3.5.0 [336ed68f] + CSV v0.10.16 [324d7699] + CategoricalArrays v1.1.1 [8be319e6] + Chain v1.0.0 [944b1d66] + CodecZlib v0.7.8 ⌅ [a80b9123] + CommonMark v0.8.16 [f0e56b4a] + ConcurrentUtilities v2.5.1 [8f4d0f93] + Conda v1.10.3 [1313f7d8] + DataFramesMeta v0.15.6 ⌅ [864edb3b] ↓ DataStructures v0.19.5 ⇒ v0.18.22 [e7dc6d0d] + DataValues v0.4.13 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [d3d5718d] + Diversity v0.5.15 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.5.0 ⌃ [86223c79] + Graphs v1.13.1 ⌅ [cd3eb016] + HTTP v1.11.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.14 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [1c8ee90f] + IterableTables v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [4d8831e6] + OpenSSL v1.6.1 [90014a1f] + PDMats v0.11.37 [fae87a5f] + ParserCombinator v2.2.1 [69de0a69] + Parsers v2.8.6 [aea672f4] + Phylo v0.5.4 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [6f49c342] + RCall v0.14.13 [9ae346a0] + RandomBooleanMatrices v0.1.2 [e6cf234a] + RandomNumbers v1.6.0 [b3c3ace0] + RangeArrays v0.3.2 [ae029012] + Requires v1.3.1 [58378933] + ResearchSoftwareMetadata v0.1.6 [79098fc4] + Rmath v0.9.0 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.6 [348f2d5d] + SpatialEcology v0.9.17 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 [69024149] + StringEncodings v0.3.7 [ec057cc2] + StructUtils v2.8.2 [9ce81f87] + TableMetadataTools v0.1.0 [382cd787] + TableTraitsUtils v1.0.2 [0796e94c] + Tokenize v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.28.0 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.3 [1b915085] + WinReg v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.16 [2e619515] + Expat_jll v2.8.1+0 [020c3dae] + Git_LFS_jll v3.7.1+0 [f8c6e375] + Git_jll v2.54.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9bd350c2] + OpenSSH_jll v10.3.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.12.1 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [2f01184e] + SparseArrays v1.12.0 [4607b0f0] + SuiteSparse [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_R7ITIl/Project.toml` [39de3d68] AxisArrays v0.4.8 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [b4f34e82] Distances v0.10.12 [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [d7ba0133] Git v1.5.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [e1d29d7a] Missings v1.2.0 [aea672f4] Phylo v0.5.4 [6f49c342] RCall v0.14.13 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.6 [348f2d5d] SpatialEcology v0.9.17 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_R7ITIl/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [15f4f7f2] AutoHashEquals v2.2.0 [39de3d68] AxisArrays v0.4.8 [d1d4a3ce] BitFlags v0.1.10 [00ebfdb7] CSTParser v3.5.0 [336ed68f] CSV v0.10.16 [324d7699] CategoricalArrays v1.1.1 [8be319e6] Chain v1.0.0 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [8f4d0f93] Conda v1.10.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [1313f7d8] DataFramesMeta v0.15.6 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.5 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.5.0 ⌃ [86223c79] Graphs v1.13.1 ⌅ [cd3eb016] HTTP v1.11.0 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.14 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [1c8ee90f] IterableTables v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.10 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [fae87a5f] ParserCombinator v2.2.1 [69de0a69] Parsers v2.8.6 [aea672f4] Phylo v0.5.4 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [6f49c342] RCall v0.14.13 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [b3c3ace0] RangeArrays v0.3.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [58378933] ResearchSoftwareMetadata v0.1.6 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.10 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.2 [348f2d5d] SpatialEcology v0.9.17 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3eaba693] StatsModels v0.7.10 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [9ce81f87] TableMetadataTools v0.1.0 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.1 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.28.0 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.3 [1b915085] WinReg v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.16 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Running tests for files: = API.jl = Diversity.jl = DiversityMeasure.jl = EcoBase.jl = Ecology.jl = EffectiveNumbers.jl = GeneralisedDiversities.jl = Hill.jl = Interface.jl = Iterators.jl = Jost.jl = Metacommunity.jl = Partition.jl = Types.jl [ Info: Running tests... * Testing API.jl ... * Testing Diversity.jl ... * Testing DiversityMeasure.jl ... * Testing EcoBase.jl ... Precompiling packages... 3041.3 ms ✓ RandomBooleanMatrices 10094.2 ms ✓ DataFramesMeta 11412.7 ms ✓ SpatialEcology 3 dependencies successfully precompiled in 25 seconds. 57 already precompiled. 39 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, Crayons, DataAPI, DataFrames, DataStructures, DataValueInterfaces, Dates, EcoBase, Future, InlineStrings, InteractiveUtils, InvertedIndices, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, LaTeXStrings, Markdown, Missings, OrderedCollections, PooledArrays, PrecompileTools, Preferences, PrettyTables, Printf, REPL, RecipesBase, Reexport, SentinelArrays, Serialization, SortingAlgorithms, Statistics, StringManipulation, StyledStrings, TOML, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 11 dependents of these packages may trigger further precompilation to work with the unexpected versions. Matrix data assumed to be presence-absence Matrix data assumed to be presence-absence * Testing Ecology.jl ... * Testing EffectiveNumbers.jl ... * Testing GeneralisedDiversities.jl ... * Testing Hill.jl ... ┌ Warning: Abundances not normalised to 1, correcting... └ @ Diversity ~/.julia/packages/Diversity/trAoz/src/Metacommunity.jl:124 * Testing Interface.jl ... * Testing Iterators.jl ... Precompiling packages... 9700.7 ms ✓ Diversity → DiversityAxisArraysExt 1 dependency successfully precompiled in 10 seconds. 46 already precompiled. 46 dependencies precompiled but different versions are currently loaded (AxisArrays, Base64, Compat, Compat → CompatLinearAlgebraExt, Crayons, DataAPI, DataFrames, DataStructures, DataValueInterfaces, Dates, Diversity, EcoBase, Future, InlineStrings, InteractiveUtils, IntervalSets, IntervalSets → IntervalSetsRandomExt, IntervalSets → IntervalSetsRecipesBaseExt, IntervalSets → IntervalSetsStatisticsExt, InvertedIndices, IterTools, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, LaTeXStrings, Markdown, Missings, OrderedCollections, PooledArrays, PrecompileTools, Preferences, PrettyTables, Printf, REPL, RangeArrays, RecipesBase, Reexport, SentinelArrays, SortingAlgorithms, Statistics, StringManipulation, StyledStrings, TOML, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3400.0 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 4 seconds. 51 already precompiled. 51 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Logging, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Preferences, Printf, PtrArrays, QuadGK, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. * Testing Jost.jl ... * Testing Metacommunity.jl ... ┌ Warning: Abundances not normalised to 1, correcting... └ @ Diversity ~/.julia/packages/Diversity/trAoz/src/Metacommunity.jl:74 * Testing Partition.jl ... * Testing Types.jl ... [ Info: Running tests for extensions: = DiversityAxisArraysExt.jl = DiversityPhyloExt.jl [ Info: Running extension tests... * Testing DiversityAxisArraysExt.jl extension... * Testing DiversityPhyloExt.jl extension... Test Summary: | Pass Broken Total Time Diversity.jl | 288 2 290 6m14.6s [ Info: Cross validation packages: = Distances = RCall = StatsBase * Validating Distances.jl ... * Validating RCall.jl ... ┌ Warning: RCall.jl: Loading required package: ape │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘ape’ └ @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:166 * installing *source* package ‘lattice’ ... ** this is package ‘lattice’ version ‘0.22-9’ ** package ‘lattice’ successfully unpacked and MD5 sums checked ** using staged installation ** libs sh: 1: x86_64-conda-linux-gnu-cc: not found x86_64-conda-linux-gnu-cc -std=gnu23 -I"/home/pkgeval/.julia/conda/3/x86_64/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/pkgeval/.julia/conda/3/x86_64/include -I/home/pkgeval/.julia/conda/3/x86_64/include -Wl,-rpath-link,/home/pkgeval/.julia/conda/3/x86_64/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/pkgeval/.julia/conda/3/x86_64/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/work=/usr/local/src/conda/r-base-4.6.0 -fdebug-prefix-map=/home/pkgeval/.julia/conda/3/x86_64=/usr/local/src/conda-prefix -c init.c -o init.o /bin/sh: 1: x86_64-conda-linux-gnu-cc: not found make: *** [/home/pkgeval/.julia/conda/3/x86_64/lib/R/etc/Makeconf:192: init.o] Error 127 ERROR: compilation failed for package ‘lattice’ * removing ‘/tmp/jl_rAr3cp/lattice’ * installing *source* package ‘Rcpp’ ... ** this is package ‘Rcpp’ version ‘1.1.1-1.1’ ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs sh: 1: x86_64-conda-linux-gnu-c++: not found x86_64-conda-linux-gnu-c++ -std=gnu++20 -I"/home/pkgeval/.julia/conda/3/x86_64/lib/R/include" -DNDEBUG -I../inst/include/ -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/pkgeval/.julia/conda/3/x86_64/include -I/home/pkgeval/.julia/conda/3/x86_64/include -Wl,-rpath-link,/home/pkgeval/.julia/conda/3/x86_64/lib -fpic -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/pkgeval/.julia/conda/3/x86_64/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/work=/usr/local/src/conda/r-base-4.6.0 -fdebug-prefix-map=/home/pkgeval/.julia/conda/3/x86_64=/usr/local/src/conda-prefix -c api.cpp -o api.o /bin/sh: 1: x86_64-conda-linux-gnu-c++: not found make: *** [/home/pkgeval/.julia/conda/3/x86_64/lib/R/etc/Makeconf:199: api.o] Error 127 ERROR: compilation failed for package ‘Rcpp’ * removing ‘/tmp/jl_rAr3cp/Rcpp’ * installing *source* package ‘digest’ ... ** this is package ‘digest’ version ‘0.6.39’ ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs sh: 1: x86_64-conda-linux-gnu-cc: not found sh: 1: x86_64-conda-linux-gnu-c++: not found x86_64-conda-linux-gnu-c++ -std=gnu++20 -I"/home/pkgeval/.julia/conda/3/x86_64/lib/R/include" -DNDEBUG -I. -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/pkgeval/.julia/conda/3/x86_64/include -I/home/pkgeval/.julia/conda/3/x86_64/include -Wl,-rpath-link,/home/pkgeval/.julia/conda/3/x86_64/lib -fpic -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/pkgeval/.julia/conda/3/x86_64/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/work=/usr/local/src/conda/r-base-4.6.0 -fdebug-prefix-map=/home/pkgeval/.julia/conda/3/x86_64=/usr/local/src/conda-prefix -c SpookyV2.cpp -o SpookyV2.o /bin/sh: 1: x86_64-conda-linux-gnu-c++: not found make: *** [/home/pkgeval/.julia/conda/3/x86_64/lib/R/etc/Makeconf:199: SpookyV2.o] Error 127 ERROR: compilation failed for package ‘digest’ * removing ‘/tmp/jl_rAr3cp/digest’ ERROR: dependency ‘lattice’ is not available for package ‘nlme’ Perhaps try a variation of: install.packages('lattice') * removing ‘/tmp/jl_rAr3cp/nlme’ ERROR: dependencies ‘nlme’, ‘lattice’, ‘Rcpp’, ‘digest’ are not available for package ‘ape’ Perhaps try a variation of: install.packages(c('nlme', 'lattice', 'Rcpp', 'digest')) * removing ‘/tmp/jl_rAr3cp/ape’ ┌ Warning: RCall.jl: also installing the dependencies ‘nlme’, ‘lattice’, ‘Rcpp’, ‘digest’ │ │ trying URL 'http://cran.r-project.org/src/contrib/nlme_3.1-169.tar.gz' │ trying URL 'http://cran.r-project.org/src/contrib/lattice_0.22-9.tar.gz' │ trying URL 'http://cran.r-project.org/src/contrib/Rcpp_1.1.1-1.1.tar.gz' │ trying URL 'http://cran.r-project.org/src/contrib/digest_0.6.39.tar.gz' │ trying URL 'http://cran.r-project.org/src/contrib/ape_5.8-1.tar.gz' │ Warning in install.packages("ape", lib = "/tmp/jl_rAr3cp", repos = "http://cran.r-project.org") : │ installation of package ‘lattice’ had non-zero exit status │ Warning in install.packages("ape", lib = "/tmp/jl_rAr3cp", repos = "http://cran.r-project.org") : │ installation of package ‘Rcpp’ had non-zero exit status │ Warning in install.packages("ape", lib = "/tmp/jl_rAr3cp", repos = "http://cran.r-project.org") : │ installation of package ‘digest’ had non-zero exit status │ Warning in install.packages("ape", lib = "/tmp/jl_rAr3cp", repos = "http://cran.r-project.org") : │ installation of package ‘nlme’ had non-zero exit status │ Warning in install.packages("ape", lib = "/tmp/jl_rAr3cp", repos = "http://cran.r-project.org") : │ installation of package ‘ape’ had non-zero exit status │ │ The downloaded source packages are in │ ‘/tmp/RtmppwL03d/downloaded_packages’ └ @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:166 ┌ Warning: RCall.jl: Loading required package: ape │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘ape’ └ @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:166 ┌ Warning: ape R package not installed and would not install, skipping R crossvalidation └ @ Main.ValidateRCall.ValidateRCall_rdiversity ~/.julia/packages/Diversity/trAoz/test/run_rcall.jl:28 * Validating StatsBase.jl ... Test Summary: | Pass Total Time test set | 900 900 6m09.0s [ Info: Crosswalk and clean testing: = JuliaFormatter = ResearchSoftwareMetadata * Verifying JuliaFormatter.jl ... fatal: not a git repository (or any parent up to mount point /home) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). JuliaFormatter: Error During Test at /home/pkgeval/.julia/packages/Diversity/trAoz/test/clean_JuliaFormatter.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin/git rev-parse --show-toplevel`,["PATH=/home/pkgeval/.julia/artifacts/cbc69e6685959a713544a0b78531d49cb0ef8154/bin:/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin:/home/pkgeval/.julia/artifacts/0b9f3ad369a4ec650408069c7d6794c14a3c815c/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "EDITOR=vi", "R_LIBS_USER=/home/pkgeval/R/x86_64-conda-linux-gnu-library/4.6", "R_PDFVIEWER=", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/4b211894da5431bad5044e4237ea99ec8fc0794b/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "R_INCLUDE_DIR=/home/pkgeval/.julia/conda/3/x86_64/lib/R/include", "R_TEXI2DVICMD=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/_build_env/bin/texi2dvi", "R_HOME=/home/pkgeval/.julia/conda/3/x86_64/lib/R", "R_BZIPCMD=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/_build_env/bin/bzip2", "SED=/home/pkgeval/.julia/conda/3/x86_64/bin/sed", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/share/git-core/templates", "PKGEVAL=true", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "TAR=tar", "R_PLATFORM=x86_64-conda-linux-gnu", "R_STRIP_SHARED_LIB=x86_64-conda-linux-gnu-strip --strip-unneeded", "R_STRIP_STATIC_LIB=x86_64-conda-linux-gnu-strip --strip-debug", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "PYTHON=", "R_GZIPCMD=gzip", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/libexec/git-core", "MAKE=make", "R_SESSION_TMPDIR=/tmp/RtmppwL03d", "R_PAPERSIZE=a4", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "PAGER=less", "R_RD4PDF=times,inconsolata,hyper", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_NUM_THREADS=1", "R_LIBS_SITE=/home/pkgeval/.julia/conda/3/x86_64/lib/R/site-library", "DISPLAY=:1", "R_ZIPCMD=", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_NUM_PRECOMPILE_TASKS=1", "R_UNZIPCMD=", "R_BROWSER=", "JULIA_LOAD_PATH=@:/tmp/jl_R7ITIl", "R_PRINTCMD=", "R_SHARE_DIR=/home/pkgeval/.julia/conda/3/x86_64/lib/R/share", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "R_DOC_DIR=/home/pkgeval/.julia/conda/3/x86_64/lib/R/doc", "OPENBLAS_MAIN_FREE=1", "LN_S=ln -s"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:597 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:481 [3] read @ ./process.jl:490 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1138 [5] top-level scope @ ~/.julia/packages/Diversity/trAoz/test/clean_JuliaFormatter.jl:33 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [7] macro expansion @ ~/.julia/packages/Diversity/trAoz/test/clean_JuliaFormatter.jl:33 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [9] top-level scope @ ~/.julia/packages/Diversity/trAoz/test/runtests.jl:150 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [11] macro expansion @ ~/.julia/packages/Diversity/trAoz/test/runtests.jl:155 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [13] macro expansion @ ~/.julia/packages/Diversity/trAoz/test/runtests.jl:158 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [18] _start() @ Base ./client.jl:550 * Verifying ResearchSoftwareMetadata.jl ... fatal: not a git repository (or any parent up to mount point /home) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). RSMD: Error During Test at /home/pkgeval/.julia/packages/Diversity/trAoz/test/clean_ResearchSoftwareMetadata.jl:32 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin/git rev-parse --show-toplevel`,["PATH=/home/pkgeval/.julia/artifacts/cbc69e6685959a713544a0b78531d49cb0ef8154/bin:/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/bin:/home/pkgeval/.julia/artifacts/0b9f3ad369a4ec650408069c7d6794c14a3c815c/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "EDITOR=vi", "R_LIBS_USER=/home/pkgeval/R/x86_64-conda-linux-gnu-library/4.6", "R_PDFVIEWER=", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/4b211894da5431bad5044e4237ea99ec8fc0794b/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "R_INCLUDE_DIR=/home/pkgeval/.julia/conda/3/x86_64/lib/R/include", "R_TEXI2DVICMD=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/_build_env/bin/texi2dvi", "R_HOME=/home/pkgeval/.julia/conda/3/x86_64/lib/R", "R_BZIPCMD=/home/conda/feedstock_root/build_artifacts/r-base-split_1781028693996/_build_env/bin/bzip2", "SED=/home/pkgeval/.julia/conda/3/x86_64/bin/sed", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/share/git-core/templates", "PKGEVAL=true", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "TAR=tar", "R_PLATFORM=x86_64-conda-linux-gnu", "R_STRIP_SHARED_LIB=x86_64-conda-linux-gnu-strip --strip-unneeded", "R_STRIP_STATIC_LIB=x86_64-conda-linux-gnu-strip --strip-debug", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "PYTHON=", "R_GZIPCMD=gzip", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/2df598d357fa753db451320a645da90b5d9d7223/libexec/git-core", "MAKE=make", "R_SESSION_TMPDIR=/tmp/RtmppwL03d", "R_PAPERSIZE=a4", "LANG=C.UTF-8", "JULIA_CPU_THREADS=1", "PAGER=less", "R_RD4PDF=times,inconsolata,hyper", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_NUM_THREADS=1", "R_LIBS_SITE=/home/pkgeval/.julia/conda/3/x86_64/lib/R/site-library", "DISPLAY=:1", "R_ZIPCMD=", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_NUM_PRECOMPILE_TASKS=1", "R_UNZIPCMD=", "R_BROWSER=", "JULIA_LOAD_PATH=@:/tmp/jl_R7ITIl", "R_PRINTCMD=", "R_SHARE_DIR=/home/pkgeval/.julia/conda/3/x86_64/lib/R/share", "GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "R_DOC_DIR=/home/pkgeval/.julia/conda/3/x86_64/lib/R/doc", "OPENBLAS_MAIN_FREE=1", "LN_S=ln -s"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error @ ./process.jl:597 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:481 [3] read @ ./process.jl:490 [inlined] [4] readchomp(x::Cmd) @ Base ./io.jl:1138 [5] top-level scope @ ~/.julia/packages/Diversity/trAoz/test/clean_ResearchSoftwareMetadata.jl:33 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [7] macro expansion @ ~/.julia/packages/Diversity/trAoz/test/clean_ResearchSoftwareMetadata.jl:33 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [9] top-level scope @ ~/.julia/packages/Diversity/trAoz/test/runtests.jl:150 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [11] macro expansion @ ~/.julia/packages/Diversity/trAoz/test/runtests.jl:155 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1866 [inlined] [13] macro expansion @ ~/.julia/packages/Diversity/trAoz/test/runtests.jl:158 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [18] _start() @ Base ./client.jl:550 Test Summary: | Error Total Time test set | 2 2 18.2s c = JuliaFormatter | 1 1 13.4s JuliaFormatter | 1 1 10.7s c = ResearchSoftwareMetadata | 1 1 4.9s RSMD | 1 1 1.9s RNG of the outermost testset: Xoshiro(0x9951797c85a704f1, 0xb9d66be14dfba82b, 0xb170153285fd9556, 0xe90a07f7bdd1fd77, 0x9d4b5ee33e4bd661) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Diversity/trAoz/test/runtests.jl:139 Testing failed after 787.93s ERROR: LoadError: Package Diversity errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1889.2s: package tests unexpectedly errored