Package evaluation to test CrystalNets on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T16:50:08.358 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.51s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [7952bbbe] + CrystalNets v1.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.2.0 [864edb3b] + DataStructures v0.19.5 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.8.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [bac558e1] + OrderedCollections v1.8.2 [f305370e] + PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] + PeriodicGraphs v1.0.1 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.6 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 395987.4 ms ✓ CrystalNets 1 dependency successfully precompiled in 397 seconds. 65 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 25 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 418.29s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_0vOFmJ/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [86223c79] Graphs v1.14.0 [18c5b727] PeriodicGraphs v1.0.1 [90137ffa] StaticArrays v1.9.18 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_0vOFmJ/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [864edb3b] DataStructures v0.19.5 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.14.0 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.8.0 [1914dd2f] MacroTools v0.5.16 ⌅ [bac558e1] OrderedCollections v1.8.2 [f305370e] PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] PeriodicGraphs v1.0.1 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.6 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: This CIF file contains multiple colliding atoms. Only one atom will be kept per site. [ Warning: Cu atoms suspiciously close to one another(bond length: 0.5503737600000008). One will be removed. [ Info: Initial pass found N, O and C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for c8ce00653a2: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: Detected 5 structures of dimension 0 in c8ce00653a2, possibly complex solvent residues. They will be ignored for topology computation. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 73 3 76 18m03.2s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 1.1s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 9m52.9s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 53.1s Test Summary: | Pass Broken Total Time Executable | 29 1 30 10.1s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 .................................................. 24 / 36 .................................................. 25 / 36 .................................................. 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .................................................. 29 / 36 .................................................. 30 / 36 .................................................. 31 / 36 .................................................. 32 / 36 ......... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 23 running 1 of 1 signal (10): User defined signal 1 fill! at ./bitarray.jl:372 falses at ./bitarray.jl:400 [inlined] falses at ./bitarray.jl:398 [inlined] translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:709 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:809 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:34 unknown function (ip: 0x7fb446e41c02) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:87 [inlined] #topological_genome#226 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 unknown function (ip: 0x7fb4233e07ec) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7fb477aa7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7ef4a4b80f03) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7ef4a4b7758c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7ef4a4b6c731) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7ef4a4b6bc81) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7ef4a4b68d00) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7ef4a4b6166f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ef4c0fbd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007fb45d1fc010 Total snapshots: 168. Utilization: 100% ╎168 @Base/client.jl:550 _start() ╎ 168 @Base/client.jl:283 exec_options(opts::Base.JLOptions) ╎ 168 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 168 @Base/Base.jl:308 (::Base.IncludeInto)(fname::String) ╎ 168 @Base/Base.jl:307 include(mapexpr::Function, mod::Module, _path::St… ╎ 168 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 168 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), m… ╎ ╎ 168 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 168 @CrystalNets/…uery.jl:90 topological_genome(g::PeriodicGraph2D) ╎ ╎ 168 @CrystalNets/…ery.jl:90 #topological_genome#226 ╎ ╎ 168 @CrystalNets/…ery.jl:87 topological_genome ╎ ╎ ╎ 168 @CrystalNets/…ry.jl:153 topological_genome(group::Underlying… ╎ ╎ ╎ 168 @CrystalNets/…ry.jl:34 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 168 @CrystalNets/…n.jl:274 minimize ╎ ╎ ╎ 168 @CrystalNets/…n.jl:287 minimize_unstable ╎ ╎ ╎ 168 @CrystalNets/…n.jl:809 find_first_valid_translation_unst… ╎ ╎ ╎ ╎ 96 @CrystalNets/….jl:677 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 13 @Base/task.jl:1082 yield() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:967 enq_work(t::Task) ╎ ╎ ╎ ╎ 9 @Base/task.jl:989 enq_work(t::Task) 1╎ ╎ ╎ ╎ 1 @Base/gcutils.jl:0 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 1 @Base/task.jl:897 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:43 lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:56 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:637 == 3╎ ╎ ╎ ╎ 3 @Base/task.jl:898 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 4 @Base/task.jl:901 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:65 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:637 == ╎ ╎ ╎ ╎ 3 @Base/…cks-mt.jl:68 unlock 2╎ ╎ ╎ ╎ ╎ 2 @Base/…utils.jl:159 enable_finalizers 1╎ ╎ ╎ ╎ ╎ 1 @Base/…utils.jl:160 enable_finalizers 2╎ ╎ ╎ ╎ 2 @Base/task.jl:1005 enq_work(t::Task) 3╎ ╎ ╎ ╎ 83 @Base/task.jl:1084 yield() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1222 wait() ╎ ╎ ╎ ╎ 3 @Base/task.jl:1227 wait() 3╎ ╎ ╎ ╎ 3 @Base/gcutils.jl:0 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 6 @Base/task.jl:1228 wait() ╎ ╎ ╎ ╎ 6 @Base/task.jl:1214 poptask(W::Base.IntrusiveLinkedLi… ╎ ╎ ╎ ╎ 6 @Base/task.jl:1196 trypoptask(W::Base.IntrusiveLink… 2╎ ╎ ╎ ╎ ╎ 4 @Base/task.jl:923 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 2 @Base/…ks-mt.jl:43 lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:54 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tils.jl:166 disable_finalizers ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:56 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:924 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:927 popfirst!(W::Base.IntrusiveLinke… 1╎ ╎ ╎ ╎ ╎ 1 @Base/gcutils.jl:0 unlock ╎ ╎ ╎ ╎ 2 @Base/task.jl:1229 wait() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1141 try_yieldto(undo::typeof(Base.ens… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1143 try_yieldto(undo::typeof(Base.ens… ╎ ╎ ╎ ╎ 68 @Base/task.jl:1230 wait() 68╎ ╎ ╎ ╎ 68 @Base/libuv.jl:133 process_events ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:679 translation_to_direct_map(shrunk_… 3╎ ╎ ╎ ╎ 3 @Base/…entials.jl:919 getindex 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:680 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:682 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:81 getindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:919 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:686 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @CrystalNets/…n.jl:0 backtrack_to!(vmapprogress::Vecto… ╎ ╎ ╎ ╎ 28 @CrystalNets/….jl:699 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/array.jl:783 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/array.jl:790 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/…nerator.jl:45 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:519 < ╎ ╎ ╎ ╎ 23 @Base/array.jl:795 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 23 @Base/array.jl:670 _array_for_inner ╎ ╎ ╎ ╎ 23 @Base/…tarray.jl:866 similar ╎ ╎ ╎ ╎ 23 @Base/…tarray.jl:867 similar ╎ ╎ ╎ ╎ ╎ 23 @Base/boot.jl:660 Array ╎ ╎ ╎ ╎ ╎ 17 @Base/boot.jl:647 Array 17╎ ╎ ╎ ╎ ╎ 17 @Base/boot.jl:588 GenericMemory 6╎ ╎ ╎ ╎ ╎ 6 @Base/boot.jl:648 Array ╎ ╎ ╎ ╎ 3 @Base/array.jl:800 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 3 @Base/array.jl:826 collect_to_with_first! ╎ ╎ ╎ ╎ 3 @Base/array.jl:848 collect_to! ╎ ╎ ╎ ╎ 2 @Base/…erator.jl:45 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:0 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:519 < ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…l:701 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 5 @CrystalNets/….jl:707 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 5 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 5 @Base/sort.jl:1740 #sort!#23 ╎ ╎ ╎ ╎ 5 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 5 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 5 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 5 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 5 @Base/sort.jl:800 _sort!(v::Vector{PeriodicVerte… 1╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:0 _sort!(v::Vector{PeriodicVertex… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:843 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tors.jl:426 > 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:845 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 2 @Base/…ring.jl:120 lt ╎ ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…:707 #translation_to_direct_map… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ors.jl:426 > 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:848 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:986 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:991 _setindex! ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:708 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 2 @Base/some.jl:158 macro expansion ╎ ╎ ╎ ╎ 2 @Base/array.jl:2444 findfirst 1╎ ╎ ╎ ╎ 2 @Base/array.jl:2393 findnext ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:709 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 4 @Base/bitarray.jl:398 falses ╎ ╎ ╎ ╎ 4 @Base/…tarray.jl:400 falses ╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:647 Array 2╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:588 GenericMemory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:377 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 1 @Base/array.jl:329 fill! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:0 _fill! ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:711 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/range.jl:5 Colon ╎ ╎ ╎ ╎ 1 @Base/range.jl:415 UnitRange 1╎ ╎ ╎ ╎ 1 @Base/range.jl:426 unitrange_last ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:713 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:919 getindex ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:715 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 2 @Base/bitarray.jl:676 getindex 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:699 checkbounds ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:726 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:590 backtrack_to!(vmapprogress::Vect… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:597 backtrack_to!(vmapprogress::Vect… 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 attribute_next_available_modify!(vma… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:565 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:222 view 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:0 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:569 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:216 view ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:249 unsafe_view ╎ ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:28 SubArray 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:891 ensure_indexable ╎ ╎ ╎ ╎ 11 @CrystalNets/….jl:730 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 11 @Base/bitarray.jl:398 falses ╎ ╎ ╎ ╎ 11 @Base/…tarray.jl:400 falses ╎ ╎ ╎ ╎ 11 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 9 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 4 @Base/boot.jl:647 Array 4╎ ╎ ╎ ╎ ╎ 4 @Base/boot.jl:588 GenericMemory 5╎ ╎ ╎ ╎ ╎ 5 @Base/boot.jl:648 Array 2╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:39 BitArray ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:733 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:677 getindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:671 unsafe_bitgetindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:919 getindex ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:736 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:919 getindex 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:750 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…sentials.jl:0 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:755 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:81 getindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:760 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:554 attribute_next_available! ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:573 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1289 push! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1293 _push! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1010 __safe_setindex! ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:782 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/int.jl:87 + ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ef4a67fc010 Total snapshots: 275. Utilization: 0% ╎275 @Base/client.jl:550 _start() ╎ 275 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 275 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 275 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 275 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 275 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 275 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 275 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 275 @Pkg/src/API.jl:157 test ╎ ╎ 275 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 275 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 275 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 275 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 275 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 275 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 275 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 275 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 275 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 275 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 275 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 275 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 275 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 275 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 275 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 275 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 275 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 275 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 275 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 275 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 275 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 275 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 275 @Base/…sk.jl:1228 wait() 274╎ ╎ ╎ ╎ ╎ ╎ ╎ 275 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 24781291 (Pool: 24780617; Big: 674); GC: 21 [23] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/gASyq/test/runtests.jl:415 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1389 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_process_events at /source/src/jl_uv.c:394 process_events at ./libuv.jl:133 [inlined] wait at ./task.jl:1230 yield at ./task.jl:1084 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:677 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:809 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:34 unknown function (ip: 0x7fb446e41c02) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:87 [inlined] #topological_genome#226 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90 unknown function (ip: 0x7fb4233e07ec) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7fb477aa7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1972228037 (Pool: 1972223985; Big: 4052); GC: 536 PkgEval terminated after 2723.24s: test duration exceeded the time limit