Package evaluation to test ClimaAtmos on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T07:55:26.381 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.9s ################################################################################ # Installation # Installing ClimaAtmos... Resolving package versions... Installed ClimaAtmos ─ v0.40.0 Updating `~/.julia/environments/v1.12/Project.toml` [b2c96348] + ClimaAtmos v0.40.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.25.0 [4c555306] + ArrayLayouts v1.12.2 [86bc3604] + AtmosphericProfilesLibrary v0.1.8 [a9b6321e] + Atomix v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [aae01518] + BandedMatrices v1.11.0 [8e7c35d0] + BlockArrays v1.9.3 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.2.10 [082447d4] + ChainRules v1.73.0 [d360d2e6] + ChainRulesCore v1.26.1 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [b2c96348] + ClimaAtmos v0.40.0 [3a4d1b5c] + ClimaComms v0.6.11 [d414da3d] + ClimaCore v0.14.54 [1ecacbb8] + ClimaDiagnostics v0.3.6 [dd0f122e] + ClimaInterpolations v0.1.1 [5c42b081] + ClimaParams v1.0.17 [595c0a79] + ClimaTimeSteppers v0.9.0 [b3f4f4ca] + ClimaUtilities v0.1.29 ⌅ [6a9e3e04] + CloudMicrophysics v0.36.0 [1fbeeb36] + CommonDataModel v0.4.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [3c3547ce] + DiskArrays v0.4.21 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [f151be2c] + EnzymeCore v0.8.20 [e2ba6199] + ExprTools v0.1.10 [9aa1b823] + FastClosures v0.3.2 [5789e2e9] + FileIO v1.19.0 [1a297f60] + FillArrays v1.16.0 [587475ba] + Flux v0.16.10 [f6369f11] + ForwardDiff v1.4.1 [d9f16b24] + Functors v0.5.2 [0c68f7d7] + GPUArrays v11.5.8 [46192b85] + GPUArraysCore v0.2.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [f67ccb44] + HDF5 v0.17.3 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.17 [e98cc03f] + Insolation v1.1.1 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [ba0b0d4f] + Krylov v0.10.6 ⌅ [0b1a1467] + KrylovKit v0.8.3 [929cbde3] + LLVM v9.9.0 [8ac3fa9e] + LRUCache v1.6.2 [9dccce8e] + LazyBroadcast v1.0.0 [5c8ed15e] + LinearOperators v2.14.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [c2834f40] + MLCore v1.0.2 [7e8f7934] + MLDataDevices v1.17.10 [f1d291b0] + MLUtils v0.4.9 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [c3c07f87] + MultiBroadcastFusion v0.3.3 [85f8d34a] + NCDatasets v0.14.15 [872c559c] + NNlib v0.9.36 [5da4648a] + NVTX v1.0.3 [77ba4419] + NaNMath v1.1.4 [0d71be07] + NullBroadcasts v0.1.0 [6fe1bfb0] + OffsetArrays v1.17.0 [0b1bfda6] + OneHotArrays v0.2.11 [3bd65402] + Optimisers v0.4.7 ⌅ [bac558e1] + OrderedCollections v1.8.2 [65ce6f38] + PackageExtensionCompat v1.0.2 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [33c8b6b6] + ProgressLogging v0.1.6 [43287f4e] + PtrArrays v1.4.0 [a01a1ee8] + RRTMGP v0.21.9 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v3.54.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v1.0.2 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.27 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [69024149] + StringEncodings v0.3.7 [09ab397b] + StructArrays v0.7.3 [49b00bb7] + SurfaceFluxes v1.0.0 [2efcf032] + SymbolicIndexingInterface v0.3.48 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.20.10 [b718987f] + TextWrap v1.0.2 [b60c26fb] + Thermodynamics v1.2.1 [a759f4b9] + TimerOutputs v0.5.29 [0fe1646c] + UnrolledUtilities v0.1.9 [013be700] + UnsafeAtomics v0.3.1 ⌅ [409d34a3] + VectorInterface v0.4.9 [efce3f68] + WoodburyMatrices v1.1.0 [ddb6d928] + YAML v0.4.16 [e88e6eb3] + Zygote v0.7.11 [700de1a5] + ZygoteRules v0.2.7 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] + LLVMExtra_jll v0.0.43+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.2+0 [7243133f] + NetCDF_jll v401.1000.0+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.7+0 [337d8026] + libzip_jll v1.11.3+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 16.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 626273.6 ms ✓ ClimaAtmos 187436.1 ms ✓ ClimaAtmos → ClimaAtmosMusica 2 dependencies successfully precompiled in 844 seconds. 492 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 334 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 871.03s ################################################################################ # Testing # Testing ClimaAtmos Status `/tmp/jl_s6xA9z/Project.toml` [79e6a3ab] Adapt v4.6.1 [4c88cf16] Aqua v0.8.16 [c7e460c6] ArgParse v1.2.0 [86bc3604] AtmosphericProfilesLibrary v0.1.8 [13f3f980] CairoMakie v0.15.11 [b2c96348] ClimaAtmos v0.40.0 [3a4d1b5c] ClimaComms v0.6.11 [d414da3d] ClimaCore v0.14.54 [1ecacbb8] ClimaDiagnostics v0.3.6 [dd0f122e] ClimaInterpolations v0.1.1 [5c42b081] ClimaParams v1.0.17 [595c0a79] ClimaTimeSteppers v0.9.0 [b3f4f4ca] ClimaUtilities v0.1.29 ⌅ [6a9e3e04] CloudMicrophysics v0.36.0 [31c24e10] Distributions v0.25.127 [587475ba] Flux v0.16.10 [f6369f11] ForwardDiff v1.4.1 [e98cc03f] Insolation v1.1.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.14 [033835bb] JLD2 v0.6.4 [9dccce8e] LazyBroadcast v1.0.0 [d3d182ee] Musica v0.15.0 [85f8d34a] NCDatasets v0.14.15 [5da4648a] NVTX v1.0.3 [0d71be07] NullBroadcasts v0.1.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [08abe8d2] PrettyTables v3.3.2 [a01a1ee8] RRTMGP v0.21.9 [1bc83da4] SafeTestsets v0.1.0 [0a514795] SparseMatrixColorings v0.4.27 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 [49b00bb7] SurfaceFluxes v1.0.0 [b60c26fb] Thermodynamics v1.2.1 [0fe1646c] UnrolledUtilities v0.1.9 [ddb6d928] YAML v0.4.16 [56f22d72] Artifacts v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [4af54fe1] LazyArtifacts v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_s6xA9z/Manifest.toml` [47edcb42] ADTypes v1.22.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.16 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.25.0 [4c555306] ArrayLayouts v1.12.2 [86bc3604] AtmosphericProfilesLibrary v0.1.8 [a9b6321e] Atomix v1.1.3 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [aae01518] BandedMatrices v1.11.0 [18cc8868] BaseDirs v1.3.2 [8e7c35d0] BlockArrays v1.9.3 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.10 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.11 [082447d4] ChainRules v1.73.0 [d360d2e6] ChainRulesCore v1.26.1 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [b2c96348] ClimaAtmos v0.40.0 [3a4d1b5c] ClimaComms v0.6.11 [d414da3d] ClimaCore v0.14.54 [1ecacbb8] ClimaDiagnostics v0.3.6 [dd0f122e] ClimaInterpolations v0.1.1 [5c42b081] ClimaParams v1.0.17 [595c0a79] ClimaTimeSteppers v0.9.0 [b3f4f4ca] ClimaUtilities v0.1.29 ⌅ [6a9e3e04] CloudMicrophysics v0.36.0 [6b39b394] CodecZstd v0.8.7 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.4.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.8 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [b7a15901] CoreMath v0.1.0 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.4 [1f15a43c] CxxWrap v0.17.5 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [3c3547ce] DiskArrays v0.4.21 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.20 [429591f6] ExactPredicates v2.2.9 [e2ba6199] ExprTools v0.1.10 [b86e33f2] FFTA v0.3.1 [9aa1b823] FastClosures v0.3.2 [5789e2e9] FileIO v1.19.0 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [587475ba] Flux v0.16.10 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.4.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.5.8 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [5c1252a2] GeometryBasics v0.5.11 [88fa7841] GilbertCurves v0.1.0 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.2 [f67ccb44] HDF5 v0.17.3 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.17 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [e98cc03f] Insolation v1.1.1 [18e54dd8] IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v1.0.9 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions 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[4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Era global dataset path:`/tmp/climaatmos_test_artifacts/era-global/box-era5-monthly.nc` [ Info: Era single column dataset path:`/tmp/climaatmos_test_artifacts/era-single-column/box-single_column_test.nc` [ Info: topo dataset path:`/tmp/climaatmos_test_artifacts/topo-info/topo_drag.res.nc` [ Info: MiMA convective gravity wave path:`/tmp/climaatmos_test_artifacts/mima-gwf/mima_gwf.nc` [ Info: GFDL OGWD test data:`/tmp/climaatmos_test_artifacts/gfdl-ogw-data/gfdl_ogw.nc` 214.968307 seconds (49.75 M allocations: 3.008 GiB, 2.57% gc time, 33.93% compilation time: 14% of which was recompilation) Test Summary: | Pass Total Time Aqua | 13 13 3m35.2s 1.241652 seconds (447.09 k allocations: 26.172 MiB, 96.27% compilation time) Test Summary: | Pass Total Time Dependencies | 1 1 1.3s 3.671424 seconds (1.57 M allocations: 80.107 MiB, 98.04% compilation time: 6% of which was recompilation) Test Summary: | Pass Total Time Callbacks | 13 13 3.7s 19.664085 seconds (8.08 M allocations: 422.722 MiB, 1.07% gc time, 99.25% compilation time) Test Summary: | Pass Total Time Configuration tests | 98 98 19.7s 111.101702 seconds (96.11 M allocations: 4.686 GiB, 2.63% gc time, 99.83% compilation time) Test Summary: | Pass Total Time Grids | 75 75 1m51.1s ┌ Warning: `FaceFiniteDifferenceSpace(mesh::IntervalMesh)` is deprecated, use `FiniteDifferenceSpace(FiniteDifferenceGrid(ClimaComms.device(), mesh), CellFace())` instead. │ caller = ip:0x0 └ @ Core :-1 488.768332 seconds (498.50 M allocations: 22.783 GiB, 4.25% gc time, 99.76% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Utilities | 110 110 8m08.8s 9.162619 seconds (5.76 M allocations: 309.215 MiB, 2.53% gc time, 97.35% compilation time) Test Summary: | Pass Total Time Variable manipulations | 36 36 9.2s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml 75.696999 seconds (70.33 M allocations: 2.826 GiB, 1.30% gc time, 93.42% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Parameter tests | 54 54 1m15.7s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Warning: Running simulations without any moisture present. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/DQBfW/src/config/model_getters.jl:701 ┌ Info: numerics │ `energy_q_tot_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_mse_q_tot_upwinding`::`Val{:first_order}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `edmfx_tracer_upwinding`::`Val{:first_order}` │ `test_dycore_consistency`::`Nothing` │ `reproducible_restart`::`Nothing` │ `limiter`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` └ `hyperdiff`::`ClimaAtmos.Hyperdiffusion{Float32}` ┌ Info: AtmosModel: │ │ `water`::`ClimaAtmos.AtmosWater{ClimaAtmos.DryModel, ClimaAtmos.QuadratureCloud, ClimaAtmos.Implicit, Nothing, ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}, ClimaAtmos.GaussianSGS, Float32}, ClimaAtmos.FixedTerminalVelocity{Float32}}` │ `scm_setup`::`ClimaAtmos.SCMSetup{Nothing, Nothing, Nothing, Bool, Nothing}` │ `radiation`::`ClimaAtmos.AtmosRadiation{Nothing, ClimaAtmos.IdealizedInsolation}` │ `turbconv`::`ClimaAtmos.AtmosTurbconv{ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}, Val{false}, ClimaAtmos.SmoothMinimumBlending}, Nothing, Nothing, Nothing, Nothing}` │ `prescribed_flow`::`Nothing` │ `gravity_wave`::`ClimaAtmos.AtmosGravityWave{Nothing, Nothing}` │ `vertical_diffusion`::`Nothing` │ `sponge`::`ClimaAtmos.AtmosSponge{Nothing, Nothing}` │ `surface`::`ClimaAtmos.AtmosSurface{ClimaAtmos.SurfaceConditions.ExchangeCoefficients{Float32}, ClimaAtmos.SurfaceConditions.AnalyticTemperature{typeof(ClimaAtmos.Setups.zonally_symmetric_temperature)}, ClimaAtmos.SurfaceConditions.SurfaceBoundaryOverrides{Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, ClimaAtmos.ConstantAlbedo{Float32}}` │ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:first_order}, Val{:none}, Val{:first_order}, Nothing, Nothing, Nothing, ClimaAtmos.Explicit, ClimaAtmos.Hyperdiffusion{Float32}}` └ `chemistry`::`ClimaAtmos.AtmosChem{Nothing}` [ Info: Single-process ClimaAtmos run on CPUSingleThreaded [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` ┌ Info: Jacobian algorithm: ManualSparseJacobian( │ approximate_solve_iters = 1, └ ) [ Info: Jacobian derivative flags: topography_flag = IgnoreDerivative, diffusion_flag = IgnoreDerivative [ Info: Added 2 default ClimaAtmos diagnostics [ Info: Saving accumulated diagnostics to disk with frequency: 1 hour ┌ Warning: The checkpointing frequency (checkpoint_frequency = 2 seconds) should be an integer multiple of all diagnostics accumulation periods (1 hour) so simulations can be safely restarted from any checkpoint └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/DQBfW/src/callbacks/get_callbacks.jl:220 [ Info: Initialized 2 total diagnostics ┌ Info: Simulation info │ job_id = "test_yaml_path_fix" └ output_dir = "/tmp/jl_UzuGAz/output_0000" 379.028293 seconds (339.55 M allocations: 16.339 GiB, 3.30% gc time, 99.93% compilation time) Test Summary: | Pass Total Time Check TOML path | 4 4 6m19.0s 34.038647 seconds (21.23 M allocations: 1.079 GiB, 1.49% gc time, 99.13% compilation time) Test Summary: | Pass Total Time Radiation interface tests | 32 32 34.1s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: numerics │ `energy_q_tot_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_mse_q_tot_upwinding`::`Val{:first_order}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `edmfx_tracer_upwinding`::`Val{:first_order}` │ `test_dycore_consistency`::`Nothing` │ `reproducible_restart`::`Nothing` │ `limiter`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` └ `hyperdiff`::`ClimaAtmos.Hyperdiffusion{Float32}` ┌ Info: AtmosModel: │ │ `water`::`ClimaAtmos.AtmosWater{ClimaAtmos.EquilibriumMicrophysics0M, ClimaAtmos.QuadratureCloud, ClimaAtmos.Implicit, Nothing, ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}, ClimaAtmos.GaussianSGS, Float32}, ClimaAtmos.FixedTerminalVelocity{Float32}}` │ `scm_setup`::`ClimaAtmos.SCMSetup{ClimaAtmos.Subsidence{ClimaAtmos.Setups.var"#subsidence_forcing##0#subsidence_forcing##1"{Float32}}, Nothing, Nothing, Bool, @NamedTuple{prof_ug::Returns{Float32}, prof_vg::Returns{Float32}, coriolis_param::Float32}}` │ `radiation`::`ClimaAtmos.AtmosRadiation{ClimaAtmos.RadiationDYCOMS{Float32}, ClimaAtmos.IdealizedInsolation}` │ `turbconv`::`ClimaAtmos.AtmosTurbconv{ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}, Val{false}, ClimaAtmos.SmoothMinimumBlending}, Nothing, Nothing, Nothing, Nothing}` │ `prescribed_flow`::`Nothing` │ `gravity_wave`::`ClimaAtmos.AtmosGravityWave{Nothing, Nothing}` │ `vertical_diffusion`::`Nothing` │ `sponge`::`ClimaAtmos.AtmosSponge{Nothing, Nothing}` │ `surface`::`ClimaAtmos.AtmosSurface{ClimaAtmos.SurfaceConditions.MoninObukhov{Float32, ClimaAtmos.SurfaceConditions.HeatFluxes{Float32, Float32}, Float32}, ClimaAtmos.SurfaceConditions.AnalyticTemperature{Returns{Float32}}, ClimaAtmos.SurfaceConditions.SurfaceBoundaryOverrides{Float32, Float32, Nothing, Nothing, Nothing, Nothing}, ClimaAtmos.ConstantAlbedo{Float32}}` │ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:first_order}, Val{:none}, Val{:first_order}, Nothing, Nothing, Nothing, ClimaAtmos.Explicit, ClimaAtmos.Hyperdiffusion{Float32}}` └ `chemistry`::`ClimaAtmos.AtmosChem{Nothing}` [ Info: Single-process ClimaAtmos run on CPUSingleThreaded [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` ┌ Info: Jacobian algorithm: ManualSparseJacobian( │ approximate_solve_iters = 1, └ ) [ Info: Jacobian derivative flags: topography_flag = IgnoreDerivative, diffusion_flag = IgnoreDerivative ┌ Info: Simulation info │ job_id = "coupler_compatibility1" └ output_dir = "coupler_compatibility1/output_0000" ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/../../config/default_configs/default_config.yml ┌ Info: numerics │ `energy_q_tot_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_mse_q_tot_upwinding`::`Val{:first_order}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `edmfx_tracer_upwinding`::`Val{:first_order}` │ `test_dycore_consistency`::`Nothing` │ `reproducible_restart`::`Nothing` │ `limiter`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` └ `hyperdiff`::`ClimaAtmos.Hyperdiffusion{Float32}` ┌ Info: AtmosModel: │ │ `water`::`ClimaAtmos.AtmosWater{ClimaAtmos.EquilibriumMicrophysics0M, ClimaAtmos.QuadratureCloud, ClimaAtmos.Implicit, Nothing, ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}, ClimaAtmos.GaussianSGS, Float32}, ClimaAtmos.FixedTerminalVelocity{Float32}}` │ `scm_setup`::`ClimaAtmos.SCMSetup{Nothing, Nothing, Nothing, Bool, Nothing}` │ `radiation`::`ClimaAtmos.AtmosRadiation{ClimaAtmos.RRTMGPInterface.ClearSkyRadiation, ClimaAtmos.IdealizedInsolation}` │ `turbconv`::`ClimaAtmos.AtmosTurbconv{ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}, Val{false}, ClimaAtmos.SmoothMinimumBlending}, ClimaAtmos.PrognosticEDMFX{1, false, Float32}, Nothing, Nothing, Nothing}` │ `prescribed_flow`::`Nothing` │ `gravity_wave`::`ClimaAtmos.AtmosGravityWave{Nothing, Nothing}` │ `vertical_diffusion`::`Nothing` │ `sponge`::`ClimaAtmos.AtmosSponge{Nothing, Nothing}` │ `surface`::`ClimaAtmos.AtmosSurface{Nothing, ClimaAtmos.SurfaceConditions.AnalyticTemperature{typeof(ClimaAtmos.Setups.zonally_symmetric_temperature)}, ClimaAtmos.SurfaceConditions.SurfaceBoundaryOverrides{Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, ClimaAtmos.ConstantAlbedo{Float32}}` │ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:first_order}, Val{:none}, Val{:first_order}, Nothing, Nothing, Nothing, ClimaAtmos.Explicit, ClimaAtmos.Hyperdiffusion{Float32}}` └ `chemistry`::`ClimaAtmos.AtmosChem{Nothing}` [ Info: Single-process ClimaAtmos run on CPUSingleThreaded [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 517 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1561 addModule at /source/src/jitlayers.cpp:2044 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__call_in_world_total at /source/src/builtins.c:919 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 concrete_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1012 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:877 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:871 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 jfptr_handle1_78932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 doworkloop at ./../usr/share/julia/Compiler/src/inferencestate.jl:1205 jfptr_doworkloop_46830.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4572 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_#392 at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/simulation/AtmosSimulations.jl:331 AtmosSimulation at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/simulation/AtmosSimulations.jl:232 unknown function (ip: 0x7bf30179060b) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 get_simulation at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/type_getters.jl:509 unknown function (ip: 0x7bf2d4767a12) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 [inlined] macro expansion at ./timing.jl:697 [inlined] macro expansion at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/test/runtests.jl:36 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] macro expansion at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/test/runtests.jl:36 [inlined] top-level scope at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 jfptr_eval_12694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7bf3179e7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7d2116388503) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7d21163779bc) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7d2116372189) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7d2116371dc1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7d211636da80) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7d21163669ef) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d2130c0e249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d21163fc010 Total snapshots: 372. Utilization: 0% ╎372 @Base/client.jl:550 _start() ╎ 372 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 372 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 372 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 372 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 372 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 372 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 372 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 372 @Pkg/src/API.jl:157 test ╎ ╎ 372 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 372 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 372 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 372 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 372 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 372 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 372 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 372 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 372 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 372 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 372 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 372 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 372 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 372 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 372 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 372 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 372 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 372 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 372 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 372 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 372 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 372 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 372 @Base/…sk.jl:1228 wait() 371╎ ╎ ╎ ╎ ╎ ╎ ╎ 372 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 27197378 (Pool: 27196531; Big: 847); GC: 25 [517] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/test/coupler_compatibility.jl:115 _ZN4llvm15callDefaultCtorINS_19LoopInfoWrapperPassELb1EEEPNS_4PassEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17PMTopLevelManager12schedulePassEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17PMTopLevelManager12schedulePassEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16TargetPassConfig7addPassEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_113X86PassConfig15addInstSelectorEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16TargetPassConfig17addCoreISelPassesEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZL23addPassesToGenerateCodeRN4llvm17LLVMTargetMachineERNS_6legacy15PassManagerBaseEbRNS_28MachineModuleInfoWrapperPassE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17LLVMTargetMachine17addPassesToEmitMCERNS_6legacy15PassManagerBaseERPNS_9MCContextERNS_17raw_pwrite_streamEb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1561 addModule at /source/src/jitlayers.cpp:2044 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__call_in_world_total at /source/src/builtins.c:919 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 concrete_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1012 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:877 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:871 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 jfptr_handle1_78932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 doworkloop at ./../usr/share/julia/Compiler/src/inferencestate.jl:1205 jfptr_doworkloop_46830.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4572 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_#392 at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/simulation/AtmosSimulations.jl:331 AtmosSimulation at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/simulation/AtmosSimulations.jl:232 unknown function (ip: 0x7bf30179060b) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 get_simulation at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/src/config/type_getters.jl:509 unknown function (ip: 0x7bf2d4767a12) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 [inlined] macro expansion at ./timing.jl:697 [inlined] macro expansion at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/test/runtests.jl:36 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] macro expansion at /home/pkgeval/.julia/packages/ClimaAtmos/DQBfW/test/runtests.jl:36 [inlined] top-level scope at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 jfptr_eval_12694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7bf3179e7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1325037115 (Pool: 1325019528; Big: 17587); GC: 265 PkgEval terminated after 2730.3s: test duration exceeded the time limit