Package evaluation to test CellListMap on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T13:00:02.930 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.52s ################################################################################ # Installation # Installing CellListMap... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [69e1c6dd] + CellListMap v0.10.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [69e1c6dd] + CellListMap v0.10.2 [ae650224] + ChunkSplitters v3.2.0 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [ffbed154] + DocStringExtensions v0.9.5 [1914dd2f] + MacroTools v0.5.16 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [efcf1570] + Setfield v1.1.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [1c621080] + TestItems v1.0.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 6.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 35149.6 ms ✓ CellListMap 123429.8 ms ✓ PDBTools 2 dependencies successfully precompiled in 160 seconds. 119 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 61 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 181.25s ################################################################################ # Testing # Testing CellListMap Status `/tmp/jl_f9n70X/Project.toml` [4c88cf16] Aqua v0.8.16 [6e4b80f9] BenchmarkTools v1.8.0 [69e1c6dd] CellListMap v0.10.2 [46823bd8] Chemfiles v0.10.43 [ae650224] ChunkSplitters v3.2.0 [34da2185] Compat v4.18.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [eff96d63] Measurements v2.14.1 [b8a86587] NearestNeighbors v0.4.27 [e29189f1] PDBTools v3.32.2 [aea7be01] PrecompileTools v1.3.4 [92933f4c] ProgressMeter v1.11.0 [efcf1570] Setfield v1.1.2 [aed2ae9c] ShowMethodTesting v1.3.0 [90137ffa] StaticArrays v1.9.18 [f8b46487] TestItemRunner v1.1.5 [1c621080] TestItems v1.0.0 [1986cc42] Unitful v1.28.0 [37e2e46d] LinearAlgebra v1.12.0 [44cfe95a] Pkg v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_f9n70X/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [4c88cf16] Aqua v0.8.16 [a963bdd2] AtomsBase v0.5.2 [6e4b80f9] BenchmarkTools v1.8.0 [49dc2e85] Calculus v0.5.2 [69e1c6dd] CellListMap v0.10.2 [46823bd8] Chemfiles v0.10.43 [ae650224] ChunkSplitters v3.2.0 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.39 [d7ba0133] Git v1.5.0 [b5f81e59] IOCapture v1.0.0 [842dd82b] InlineStrings v1.4.5 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [0e77f7df] LazilyInitializedFields v1.3.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [eff96d63] Measurements v2.14.1 [aea21201] MolSimToolkitShared v1.5.1 [77ba4419] NaNMath v1.1.4 [b8a86587] NearestNeighbors v0.4.27 [bac558e1] OrderedCollections v2.0.0 [e29189f1] PDBTools v3.32.2 [69de0a69] Parsers v2.8.6 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [c298f58b] ProteinSecondaryStructures v2.0.3 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [fdea26ae] SIMD v3.7.2 [efcf1570] Setfield v1.1.2 [aed2ae9c] ShowMethodTesting v1.3.0 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [ec057cc2] StructUtils v2.8.2 [f8b46487] TestItemRunner v1.1.5 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [74334e00] DSSP_jll v4.4.0+1 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [850473c1] STRIDE_jll v1.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 13368.0 ms ✓ BenchmarkTools 1 dependency successfully precompiled in 14 seconds. 16 already precompiled. 10 dependencies precompiled but different versions are currently loaded (Compat, Compat → CompatLinearAlgebraExt, Dates, Logging, PrecompileTools, Preferences, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1757.3 ms ✓ StaticArrays → StaticArraysStatisticsExt 1 dependency successfully precompiled in 2 seconds. 9 already precompiled. 8 dependencies precompiled but different versions are currently loaded (Dates, PrecompileTools, Preferences, Printf, StaticArrays, StaticArraysCore, Statistics and TOML). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 10608.1 ms ✓ NearestNeighbors 1 dependency successfully precompiled in 11 seconds. 13 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Dates, PrecompileTools, Preferences, Printf, StaticArrays, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, Statistics and TOML). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. WARNING: Ideally, run a multi-threaded test to check the parallel versions. Precompiling packages... 6054.6 ms ✓ SpecialFunctions 19654.7 ms ✓ ForwardDiff 2 dependencies successfully precompiled in 26 seconds. 18 already precompiled. 8 dependencies precompiled but different versions are currently loaded (Dates, DocStringExtensions, JLLWrappers, MacroTools, Preferences, Printf, StaticArraysCore and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 2633.4 ms ✓ Unitful → ForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. 22 dependencies precompiled but different versions are currently loaded (CommonSubexpressions, CompilerSupportLibraries_jll, Dates, DiffResults, DiffRules, DocStringExtensions, ForwardDiff, IrrationalConstants, JLLWrappers, LogExpFunctions, MacroTools, NaNMath, OpenLibm_jll, OpenSpecFun_jll, Preferences, Printf, SpecialFunctions, StaticArraysCore, TOML, Unitful, Unitful → NaNMathExt and Unitful → PrintfExt). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4112.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1 dependency successfully precompiled in 4 seconds. 22 already precompiled. 21 dependencies precompiled but different versions are currently loaded (CommonSubexpressions, CompilerSupportLibraries_jll, Dates, DiffResults, DiffRules, DocStringExtensions, ForwardDiff, IrrationalConstants, JLLWrappers, LogExpFunctions, MacroTools, NaNMath, OpenLibm_jll, OpenSpecFun_jll, PrecompileTools, Preferences, Printf, SpecialFunctions, StaticArrays, StaticArraysCore and TOML). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1148.3 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 1 dependency successfully precompiled in 1 seconds. 15 already precompiled. 14 dependencies precompiled but different versions are currently loaded (Calculus, CompilerSupportLibraries_jll, Dates, DocStringExtensions, IrrationalConstants, JLLWrappers, LogExpFunctions, Measurements, OpenLibm_jll, OpenSpecFun_jll, Preferences, Printf, SpecialFunctions and TOML). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1318.1 ms ✓ Chemfiles_jll 6599.1 ms ✓ AtomsBase 6784.8 ms ✓ Chemfiles 3 dependencies successfully precompiled in 15 seconds. 17 already precompiled. 13 dependencies precompiled but different versions are currently loaded (Base64, Dates, DocStringExtensions, JLLWrappers, PrecompileTools, Preferences, Printf, StaticArrays, StaticArraysCore, TOML, UUIDs, Unitful and Unitful → PrintfExt). Restart julia to access the new versions. Otherwise, 6 dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: │ │ WARNING: nbatches set to (2,4), but parallel is set to false, implying nbatches == (1, 1) │ └ @ CellListMap ┌ Warning: Test not run because it is invalid for this number of threads, requires Threads.nthreads() = 10 └ @ Main.var"##447" ~/.julia/packages/CellListMap/5NBDG/test/internals/CellLists.jl:31 WARNING: Ideally, run a multi-threaded test to check the parallel versions. Test Summary: | Pass Total Time Package | 1905 1905 13m17.8s Testing CellListMap tests passed Testing completed after 855.04s PkgEval succeeded after 1066.67s