Package evaluation to test CausalGraphs on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T07:20:35.611 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.25s ################################################################################ # Installation # Installing CausalGraphs... Resolving package versions... Installed ScikitLearnBase ───────────── v0.5.0 Installed Calculus ──────────────────── v0.5.2 Installed ShowCases ─────────────────── v0.1.0 Installed CategoricalDistributions ──── v0.2.2 Installed StatsFuns ─────────────────── v2.2.0 Installed HypergeometricFunctions ───── v0.3.28 Installed LoggingExtras ─────────────── v1.2.0 Installed Preferences ───────────────── v1.5.2 Installed StatisticalTraits ─────────── v3.5.0 Installed RelocatableFolders ────────── v1.0.1 Installed PDMats ────────────────────── v0.11.37 Installed ConcurrentUtilities ───────── v2.5.1 Installed NetworkLayout ─────────────── v0.4.10 Installed NNlib ─────────────────────── v0.9.36 Installed InlineStrings ─────────────── v1.4.5 Installed LearnAPI ──────────────────── v2.0.1 Installed BitBasis ──────────────────── v0.9.10 Installed EarCut_jll ────────────────── v2.2.4+0 Installed StaticArrays ──────────────── v1.9.18 Installed EarlyStopping ─────────────── v0.3.0 Installed EnumX ─────────────────────── v1.0.7 Installed ScopedValues ──────────────── v1.6.2 Installed ProgressMeter ─────────────── v1.11.0 Installed DelimitedFiles ────────────── v1.9.1 Installed OpenSSL ───────────────────── v1.6.1 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed IterationControl ──────────── v0.5.4 Installed GLM ───────────────────────── v1.9.5 Installed HTTP ──────────────────────── v1.11.0 Installed Distances ─────────────────── v0.10.12 Installed MLJModels ─────────────────── v0.18.8 Installed MLUtils ───────────────────── v0.4.9 Installed Missings ──────────────────── v1.2.0 Installed MLJTransforms ─────────────── v0.1.6 Installed MLCore ────────────────────── v1.0.2 Installed IrrationalConstants ───────── v0.2.6 Installed JSON ──────────────────────── v1.6.1 Installed PtrArrays ─────────────────── v1.4.0 Installed FiniteDiff ────────────────── v2.31.0 Installed LinearMaps ────────────────── v3.11.4 Installed StatisticalMeasures ───────── v0.3.6 Installed DataFrames ────────────────── v1.8.2 Installed SimpleBufferStream ────────── v1.2.0 Installed MLJLinearModels ───────────── v0.10.1 Installed SentinelArrays ────────────── v1.4.10 Installed SpecialFunctions ──────────── v2.8.0 Installed ADTypes ───────────────────── v1.22.0 Installed NaNMath ───────────────────── v1.1.4 Installed TranscodingStreams ────────── v0.11.3 Installed StaticArraysCore ──────────── v1.4.4 Installed MLJIteration ──────────────── v0.6.5 Installed MbedTLS ───────────────────── v1.1.10 Installed NLSolversBase ─────────────── v7.10.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MLJBase ───────────────────── v1.13.1 Installed CommonSubexpressions ──────── v0.3.1 Installed StatsModels ───────────────── v0.7.10 Installed PrettyPrinting ────────────── v0.4.2 Installed ComputationalResources ────── v0.3.2 Installed StatsAPI ──────────────────── v1.8.0 Installed DataStructures ────────────── v0.19.5 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Compat ────────────────────── v4.18.1 Installed Scratch ───────────────────── v1.3.0 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.34.12 Installed DiffRules ─────────────────── v1.16.0 Installed StatisticalMeasuresBase ───── v0.1.4 Installed MLJWrappers ───────────────── v0.1.3 Installed ColorTypes ────────────────── v0.12.1 Installed TableTraits ───────────────── v1.0.1 Installed DiffResults ───────────────── v1.1.0 Installed PositiveFactorizations ────── v0.2.4 Installed Parsers ───────────────────── v2.8.6 Installed PooledArrays ──────────────── v1.4.3 Installed HashArrayMappedTries ──────── v0.2.0 Installed CategoricalArrays ─────────── v1.1.1 Installed Setfield ──────────────────── v1.1.2 Installed PrettyTables ──────────────── v3.3.2 Installed ScientificTypes ───────────── v3.3.0 Installed DataValueInterfaces ───────── v1.0.0 Installed DecisionTree ──────────────── v0.12.4 Installed JLLWrappers ───────────────── v1.8.0 Installed ConstructionBase ──────────── v1.6.0 Installed ARFFFiles ─────────────────── v1.6.0 Installed FeatureSelection ──────────── v0.2.6 Installed AbstractTrees ─────────────── v0.4.5 Installed Measurements ──────────────── v2.14.1 Installed OrderedCollections ────────── v1.8.2 Installed OpenML ────────────────────── v0.3.3 Installed Combinatorics ─────────────── v1.1.0 Installed LineSearches ──────────────── v7.5.1 Installed MLJ ───────────────────────── v0.23.2 Installed ArrayInterface ────────────── v7.25.0 Installed ChainRulesCore ────────────── v1.26.1 Installed Reexport ──────────────────── v1.2.2 Installed LogExpFunctions ───────────── v1.0.1 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed AliasTables ───────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed UnPack ────────────────────── v1.0.2 Installed MLJDecisionTreeInterface ──── v0.4.4 Installed MacroTools ────────────────── v0.5.16 Installed KernelAbstractions ────────── v0.9.41 Installed SimpleTraits ──────────────── v0.9.6 Installed UnsafeAtomics ─────────────── v0.3.1 Installed GPUArraysCore ─────────────── v0.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed Crayons ───────────────────── v4.1.1 Installed Atomix ────────────────────── v1.1.3 Installed MLJEnsembles ──────────────── v0.4.5 Installed MLJTuning ─────────────────── v0.8.9 Installed ScientificTypesBase ───────── v3.1.0 Installed DifferentiationInterface ──── v0.7.18 Installed Adapt ─────────────────────── v4.6.1 Installed BitFlags ──────────────────── v0.1.10 Installed MLJModelInterface ─────────── v1.12.1 Installed Tables ────────────────────── v1.12.1 Installed Rmath ─────────────────────── v0.9.0 Installed StableRNGs ────────────────── v1.0.4 Installed GeometryBasics ────────────── v0.5.11 Installed DataAPI ───────────────────── v1.16.0 Installed RecipesBase ───────────────── v1.3.4 Installed FixedPointNumbers ─────────── v0.8.6 Installed MLJBalancing ──────────────── v0.1.6 Installed Optim ─────────────────────── v1.13.3 Installed TableOperations ───────────── v1.2.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed IterativeSolvers ──────────── v0.9.4 Installed URIs ──────────────────────── v1.6.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PrecompileTools ───────────── v1.3.4 Installed ForwardDiff ───────────────── v1.4.1 Installed FillArrays ────────────────── v1.16.0 Installed QuadGK ────────────────────── v2.11.3 Installed CausalGraphs ──────────────── v0.1.2 Installed Parameters ────────────────── v0.12.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed BSON ──────────────────────── v0.3.9 Installed Requires ──────────────────── v1.3.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed Distributions ─────────────── v0.25.127 Installed StructUtils ───────────────── v2.8.2 Installed LatinHypercubeSampling ────── v1.9.0 Installed StringManipulation ────────── v0.4.4 Installed EvoTrees ──────────────────── v0.18.7 Installing 4 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact EarCut 80.5 KiB Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.12/Project.toml` [68db26a2] + CausalGraphs v0.1.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [da404889] + ARFFFiles v1.6.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [fbb218c0] + BSON v0.3.9 [50ba71b6] + BitBasis v0.9.10 [d1d4a3ce] + BitFlags v0.1.10 [49dc2e85] + Calculus v0.5.2 [324d7699] + CategoricalArrays v1.1.1 [af321ab8] + CategoricalDistributions v0.2.2 [68db26a2] + CausalGraphs v0.1.2 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [7806a523] + DecisionTree v0.12.4 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [792122b4] + EarlyStopping v0.3.0 [4e289a0a] + EnumX v1.0.7 [f6006082] + EvoTrees v0.18.7 [460bff9d] + ExceptionUnwrapping v0.1.11 [33837fe5] + FeatureSelection v0.2.6 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [f6369f11] + ForwardDiff v1.4.1 [38e38edf] + GLM v1.9.5 [46192b85] + GPUArraysCore v0.2.0 [5c1252a2] + GeometryBasics v0.5.11 ⌅ [cd3eb016] + HTTP v1.11.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [b3c1a2ee] + IterationControl v0.5.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [63c18a36] + KernelAbstractions v0.9.41 [b964fa9f] + LaTeXStrings v1.4.0 [a5e1c1ea] + LatinHypercubeSampling v1.9.0 [92ad9a40] + LearnAPI v2.0.1 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [c2834f40] + MLCore v1.0.2 [add582a8] + MLJ v0.23.2 [45f359ea] + MLJBalancing v0.1.6 [a7f614a8] + MLJBase v1.13.1 ⌅ [c6f25543] + MLJDecisionTreeInterface v0.4.4 [50ed68f4] + MLJEnsembles v0.4.5 [614be32b] + MLJIteration v0.6.5 [6ee0df7b] + MLJLinearModels v0.10.1 [e80e1ace] + MLJModelInterface v1.12.1 [d491faf4] + MLJModels v0.18.8 [23777cdb] + MLJTransforms v0.1.6 [03970b2e] + MLJTuning v0.8.9 [b5d0f7f3] + MLJWrappers v0.1.3 [f1d291b0] + MLUtils v0.4.9 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [eff96d63] + Measurements v2.14.1 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [872c559c] + NNlib v0.9.36 [77ba4419] + NaNMath v1.1.4 [46757867] + NetworkLayout v0.4.10 [8b6db2d4] + OpenML v0.3.3 [4d8831e6] + OpenSSL v1.6.1 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 ⌅ [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.6 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.3.0 [30f210dd] + ScientificTypesBase v3.1.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [a19d573c] + StatisticalMeasures v0.3.6 [c062fc1d] + StatisticalMeasuresBase v0.1.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.1 [5ae413db] + EarCut_jll v2.2.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 17.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3970.1 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 2800.0 ms ✓ Combinatorics 1380.2 ms ✓ Calculus 5762.6 ms ✓ PrettyPrinting 912.1 ms ✓ LaTeXStrings 1233.3 ms ✓ PositiveFactorizations 3323.5 ms ✓ LinearMaps 763.5 ms ✓ IteratorInterfaceExtensions 4247.8 ms ✓ UnsafeAtomics 1014.7 ms ✓ StatsAPI 1727.8 ms ✓ ADTypes 980.0 ms ✓ UnPack 1902.4 ms ✓ FillArrays 1099.7 ms ✓ Statistics 4071.0 ms ✓ ShowCases 7587.1 ms ✓ MacroTools 1040.4 ms ✓ ShiftedArrays 4389.5 ms ✓ OrderedCollections 858.4 ms ✓ DataValueInterfaces 1017.8 ms ✓ EnumX 897.7 ms ✓ StableRNGs 928.7 ms ✓ Reexport 1245.4 ms ✓ DocStringExtensions 1818.5 ms ✓ InlineStrings 1130.9 ms ✓ AbstractTrees 5237.3 ms ✓ IrrationalConstants 1261.8 ms ✓ URIs 788.8 ms ✓ SimpleBufferStream 791.6 ms ✓ PtrArrays 1298.7 ms ✓ TranscodingStreams 1042.3 ms ✓ HashArrayMappedTries 4178.6 ms ✓ NaNMath 4274.8 ms ✓ BSON 946.4 ms ✓ DelimitedFiles 823.9 ms ✓ InvertedIndices 3801.9 ms ✓ ConstructionBase 869.6 ms ✓ Adapt 815.5 ms ✓ DataAPI 4544.2 ms ✓ Crayons 1048.0 ms ✓ ComputationalResources 1000.1 ms ✓ BitFlags 1031.8 ms ✓ StaticArraysCore 1856.0 ms ✓ ConcurrentUtilities 2044.9 ms ✓ PDMats 1375.5 ms ✓ Requires 1951.7 ms ✓ ProgressMeter 2255.7 ms ✓ SentinelArrays 4806.7 ms ✓ StructUtils 897.4 ms ✓ Scratch 1109.8 ms ✓ LoggingExtras 1103.7 ms ✓ Preferences 3741.4 ms ✓ Compat 1556.0 ms ✓ ScientificTypesBase 1780.5 ms ✓ ExceptionUnwrapping 1245.2 ms ✓ Measurements 2139.0 ms ✓ LinearMaps → LinearMapsSparseArraysExt 946.5 ms ✓ TableTraits 989.9 ms ✓ Atomix 4698.6 ms ✓ DifferentiationInterface 1497.5 ms ✓ FillArrays → FillArraysSparseArraysExt 6461.6 ms ✓ FixedPointNumbers 4048.8 ms ✓ Distances 1201.1 ms ✓ ScikitLearnBase 1360.7 ms ✓ Statistics → SparseArraysExt 1164.3 ms ✓ EarlyStopping 826.5 ms ✓ LinearMaps → LinearMapsStatisticsExt 971.6 ms ✓ FillArrays → FillArraysStatisticsExt 1743.9 ms ✓ CommonSubexpressions 3219.7 ms ✓ SimpleTraits 3647.0 ms ✓ DataStructures 1067.5 ms ✓ Parameters 1398.0 ms ✓ LogExpFunctions 1047.0 ms ✓ AliasTables 1082.1 ms ✓ CodecZlib 938.6 ms ✓ ScopedValues 862.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 846.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1371.5 ms ✓ Adapt → AdaptSparseArraysExt 4112.0 ms ✓ ArrayInterface 1319.6 ms ✓ GPUArraysCore 1211.1 ms ✓ PooledArrays 3966.2 ms ✓ Missings 4860.0 ms ✓ OpenSSL 863.0 ms ✓ DiffResults 1465.2 ms ✓ FillArrays → FillArraysPDMatsExt 880.6 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 1126.4 ms ✓ RelocatableFolders 1362.5 ms ✓ JLLWrappers 1595.4 ms ✓ LearnAPI 1060.7 ms ✓ PrecompileTools 900.3 ms ✓ Compat → CompatLinearAlgebraExt 1478.7 ms ✓ StatisticalTraits 939.0 ms ✓ StructUtils → StructUtilsMeasurementsExt 4779.4 ms ✓ Tables 1358.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 5538.1 ms ✓ ColorTypes 1413.8 ms ✓ Distances → DistancesSparseArraysExt 2014.0 ms ✓ DecisionTree 3679.7 ms ✓ IterationControl 1122.4 ms ✓ SortingAlgorithms 5144.6 ms ✓ QuadGK 3120.0 ms ✓ Setfield 1339.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 810.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 871.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 950.3 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1514.3 ms ✓ Rmath_jll 1624.5 ms ✓ EarCut_jll 1459.8 ms ✓ MbedTLS_jll 1443.7 ms ✓ OpenSpecFun_jll 18053.5 ms ✓ StaticArrays 3244.0 ms ✓ RecipesBase 3680.9 ms ✓ StringManipulation 15832.4 ms ✓ Parsers 5028.6 ms ✓ ChainRulesCore 6131.3 ms ✓ CategoricalArrays 2804.7 ms ✓ MLJModelInterface 1206.6 ms ✓ TableOperations 1042.7 ms ✓ StructUtils → StructUtilsTablesExt 4104.1 ms ✓ MLCore 1479.5 ms ✓ ColorTypes → StyledStringsExt 7487.3 ms ✓ StatsBase 1347.5 ms ✓ FiniteDiff 1594.4 ms ✓ Rmath 2241.9 ms ✓ MbedTLS 5860.5 ms ✓ SpecialFunctions 2429.9 ms ✓ BitBasis 1390.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1464.7 ms ✓ FillArrays → FillArraysStaticArraysExt 1505.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1596.1 ms ✓ Adapt → AdaptStaticArraysExt 1408.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 28438.1 ms ✓ GeometryBasics 6466.8 ms ✓ IterativeSolvers 1386.9 ms ✓ Measurements → MeasurementsRecipesBaseExt 46793.8 ms ✓ PrettyTables 9372.5 ms ✓ JSON 1503.5 ms ✓ InlineStrings → ParsersExt 4157.7 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 931.0 ms ✓ LinearMaps → LinearMapsChainRulesCoreExt 1042.0 ms ✓ ADTypes → ADTypesChainRulesCoreExt 892.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 934.0 ms ✓ Distances → DistancesChainRulesCoreExt 3828.9 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1014.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 4824.9 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 6366.9 ms ✓ ARFFFiles 4059.6 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1088.7 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 3305.3 ms ✓ FeatureSelection 2481.2 ms ✓ MLJWrappers 7930.1 ms ✓ MLJDecisionTreeInterface 2095.6 ms ✓ LatinHypercubeSampling 1539.1 ms ✓ PDMats → StatsBaseExt 1682.6 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1322.9 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1338.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1068.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 34018.6 ms ✓ HTTP 4427.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2333.4 ms ✓ HypergeometricFunctions 1077.2 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 1403.9 ms ✓ DiffRules 12158.8 ms ✓ KernelAbstractions 8776.7 ms ✓ NetworkLayout 93376.1 ms ✓ DataFrames 1244.2 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 5323.7 ms ✓ StatsFuns 9950.7 ms ✓ ForwardDiff 2984.5 ms ✓ KernelAbstractions → SparseArraysExt 2186.2 ms ✓ KernelAbstractions → LinearAlgebraExt 6986.2 ms ✓ OpenML 4102.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 5079.0 ms ✓ StatsModels 9611.4 ms ✓ Distributions 1637.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 4219.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 14012.1 ms ✓ NNlib 3284.7 ms ✓ Distributions → DistributionsTestExt 5446.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 4988.9 ms ✓ GLM 8182.5 ms ✓ ScientificTypes 13466.4 ms ✓ EvoTrees 2226.3 ms ✓ NLSolversBase 3001.9 ms ✓ NNlib → NNlibSpecialFunctionsExt 2880.2 ms ✓ NNlib → NNlibForwardDiffExt 11125.8 ms ✓ MLUtils 12493.0 ms ✓ CategoricalDistributions 14515.8 ms ✓ MLJTransforms 5157.9 ms ✓ LineSearches 20818.5 ms ✓ StatisticalMeasuresBase 21651.6 ms ✓ MLJModels 6512.8 ms ✓ Optim 46921.9 ms ✓ StatisticalMeasures 16311.8 ms ✓ MLJBase 10436.0 ms ✓ MLJEnsembles 8616.9 ms ✓ MLJLinearModels ✗ StatisticalMeasures → ScientificTypesExt 10555.3 ms ✓ MLJBalancing ✗ MLJBase → DefaultMeasuresExt 12007.1 ms ✓ MLJIteration 10439.0 ms ✓ MLJTuning ✗ MLJ ✗ CausalGraphs 199 dependencies successfully precompiled in 998 seconds. 38 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 124 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJ Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_4PPUg9". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 CausalGraphs Failed to precompile CausalGraphs [68db26a2-7c2b-457b-8f5d-f446513faf50] to "/home/pkgeval/.julia/compiled/v1.12/CausalGraphs/jl_J5K8XK". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_BPDcT9". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [18] top-level scope @ ~/.julia/packages/CausalGraphs/PSigP/src/CausalGraphs.jl:47 [19] include(mod::Module, _path::String) @ Base ./Base.jl:306 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [24] include_string @ ./loading.jl:2883 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [26] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/src/ensemble.jl:1 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/src/CausalGraphs.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1015.63s ################################################################################ # Testing # Testing CausalGraphs Status `/tmp/jl_WfYv5W/Project.toml` [68db26a2] CausalGraphs v0.1.2 [a93c6f00] DataFrames v1.8.2 [7806a523] DecisionTree v0.12.4 [f6006082] EvoTrees v0.18.7 [38e38edf] GLM v1.9.5 [add582a8] MLJ v0.23.2 ⌅ [c6f25543] MLJDecisionTreeInterface v0.4.4 [6ee0df7b] MLJLinearModels v0.10.1 [10745b16] Statistics v1.11.1 [3eaba693] StatsModels v0.7.10 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WfYv5W/Manifest.toml` [47edcb42] ADTypes v1.22.0 [da404889] ARFFFiles v1.6.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [a9b6321e] Atomix v1.1.3 [fbb218c0] BSON v0.3.9 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.10 [49dc2e85] Calculus v0.5.2 [324d7699] CategoricalArrays v1.1.1 [af321ab8] CategoricalDistributions v0.2.2 [68db26a2] CausalGraphs v0.1.2 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [792122b4] EarlyStopping v0.3.0 [4e289a0a] EnumX v1.0.7 [f6006082] EvoTrees v0.18.7 [460bff9d] ExceptionUnwrapping v0.1.11 [33837fe5] FeatureSelection v0.2.6 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [f6369f11] ForwardDiff v1.4.1 [38e38edf] GLM v1.9.5 [46192b85] GPUArraysCore v0.2.0 [5c1252a2] GeometryBasics v0.5.11 ⌅ [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [b3c1a2ee] IterationControl v0.5.4 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [63c18a36] KernelAbstractions v0.9.41 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 [92ad9a40] LearnAPI v2.0.1 ⌃ [d3d80556] LineSearches v7.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [c2834f40] MLCore v1.0.2 [add582a8] MLJ v0.23.2 [45f359ea] MLJBalancing v0.1.6 [a7f614a8] MLJBase v1.13.1 ⌅ [c6f25543] MLJDecisionTreeInterface v0.4.4 [50ed68f4] MLJEnsembles v0.4.5 [614be32b] MLJIteration v0.6.5 [6ee0df7b] MLJLinearModels v0.10.1 [e80e1ace] MLJModelInterface v1.12.1 [d491faf4] MLJModels v0.18.8 [23777cdb] MLJTransforms v0.1.6 [03970b2e] MLJTuning v0.8.9 [b5d0f7f3] MLJWrappers v0.1.3 [f1d291b0] MLUtils v0.4.9 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.10 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [872c559c] NNlib v0.9.36 [77ba4419] NaNMath v1.1.4 [46757867] NetworkLayout v0.4.10 [8b6db2d4] OpenML v0.3.3 [4d8831e6] OpenSSL v1.6.1 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.3.0 [30f210dd] ScientificTypesBase v3.1.0 [6e75b9c4] ScikitLearnBase v0.5.0 [7e506255] ScopedValues v1.6.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [a19d573c] StatisticalMeasures v0.3.6 [c062fc1d] StatisticalMeasuresBase v0.1.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.1 [5ae413db] EarCut_jll v2.2.4+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... ✗ StatisticalMeasures → ScientificTypesExt ✗ MLJBase → DefaultMeasuresExt ✗ MLJ Info Given CausalGraphs was explicitly requested, output will be shown live  ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace:  [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1304  [2] _include_from_serialized  @ ./loading.jl:1276 [inlined]  [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2116  [4] _require_search_from_serialized  @ ./loading.jl:2010 [inlined]  [5] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2628  [6] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [7] macro expansion  @ ./loading.jl:2422 [inlined]  [8] macro expansion  @ ./lock.jl:376 [inlined]  [9] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [10] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3027  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [16] include_string  @ ./loading.jl:2883 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [18] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_AhrZGD". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3314  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117  [7] #invokelatest_gr#239  @ ./reflection.jl:1297 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1289 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3885  [10] maybe_cachefile_lock  @ ./loading.jl:3882 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [13] macro expansion  @ ./loading.jl:2422 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [17] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:307  [18] top-level scope  @ ~/.julia/packages/CausalGraphs/PSigP/src/CausalGraphs.jl:47  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [24] include_string  @ ./loading.jl:2883 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [26] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/src/ensemble.jl:1 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/src/CausalGraphs.jl:1 in expression starting at stdin:5 ✗ CausalGraphs 0 dependencies successfully precompiled in 69 seconds. 237 already precompiled. 39 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, Crayons, DataAPI, DataFrames, DataStructures, DataValueInterfaces, Dates, Future, InlineStrings, InteractiveUtils, InvertedIndices, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, LaTeXStrings, Logging, Markdown, Missings, OrderedCollections, PooledArrays, PrecompileTools, Preferences, PrettyTables, Printf, REPL, Reexport, SentinelArrays, Serialization, SortingAlgorithms, Statistics, StringManipulation, StyledStrings, TOML, TableTraits, Tables, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 140 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJ Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_2APx9A". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 CausalGraphs Failed to precompile CausalGraphs [68db26a2-7c2b-457b-8f5d-f446513faf50] to "/home/pkgeval/.julia/compiled/v1.12/CausalGraphs/jl_pZIAsJ". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_AhrZGD". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [18] top-level scope @ ~/.julia/packages/CausalGraphs/PSigP/src/CausalGraphs.jl:47 [19] include(mod::Module, _path::String) @ Base ./Base.jl:306 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [24] include_string @ ./loading.jl:2883 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [26] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/src/ensemble.jl:1 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/src/CausalGraphs.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/CausalGraphs/PSigP/test/runtests.jl:2 Testing failed after 86.54s ERROR: LoadError: Package CausalGraphs errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1154.16s: package fails to precompile