Package evaluation to test Catlab on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T19:14:39.387 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.2s ################################################################################ # Installation # Installing Catlab... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:814 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.29 Updating `~/.julia/environments/v1.12/Project.toml` [134e5e36] + Catlab v0.17.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [227ef7b5] + ACSets v0.2.29 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [134e5e36] + Catlab v0.17.6 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.1 [a81c6b42] + Compose v0.9.7 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [e2ba6199] + ExprTools v0.1.10 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [f0ffcf3b] + GATlab v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [9c8b4983] + LightXML v0.9.3 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.6 [2ae35dd2] + Permutations v0.4.23 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.4 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.15.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.48s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 211240.4 ms ✓ Catlab 116856.8 ms ✓ Catlab → CatlabDataFramesExt 39920.5 ms ✓ Catlab → CatlabGraphsExt 88604.0 ms ✓ Catlab → CatlabMetaGraphsExt 4 dependencies successfully precompiled in 460 seconds. 108 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 46 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 478.33s ################################################################################ # Testing # Testing Catlab Status `/tmp/jl_mSxqjm/Project.toml` [227ef7b5] ACSets v0.2.29 [23cfdc9f] AlgebraicInterfaces v0.1.4 [134e5e36] Catlab v0.17.6 [a81c6b42] Compose v0.9.7 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [f0ffcf3b] GATlab v0.2.4 [86223c79] Graphs v1.14.0 [42fd0dbc] IterativeSolvers v0.9.4 [0f8b85d8] JSON3 v1.14.3 [9c8b4983] LightXML v0.9.3 [d8e11817] MLStyle v0.4.17 ⌃ [626554b9] MetaGraphs v0.8.1 [12d937ae] PEG v1.0.4 [7e49a35a] RuntimeGeneratedFunctions v0.5.19 [90137ffa] StaticArrays v1.9.18 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 [458c3c95] OpenSSL_jll v3.5.6+0 Status `/tmp/jl_mSxqjm/Manifest.toml` [227ef7b5] ACSets v0.2.29 [23cfdc9f] AlgebraicInterfaces v0.1.4 [ec485272] ArnoldiMethod v0.4.0 [134e5e36] Catlab v0.17.6 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.1 [a81c6b42] Compose v0.9.7 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.19.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [f0ffcf3b] GATlab v0.2.4 [86223c79] Graphs v1.14.0 [076d061b] HashArrayMappedTries v0.2.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.8.0 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [9c8b4983] LightXML v0.9.3 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [442fdcdd] Measures v0.3.3 ⌃ [626554b9] MetaGraphs v0.8.1 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [12d937ae] PEG v1.0.4 [69de0a69] Parsers v2.8.6 [2ae35dd2] Permutations v0.4.23 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.19 [7e506255] ScopedValues v1.6.2 [91c51154] SentinelArrays v1.4.10 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.2 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.4 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [94ce4f54] Libiconv_jll v1.18.0+0 [02c8fc9c] XML2_jll v2.15.3+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Theories | 275 275 1m18.2s ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = connected_component_projection_bfs(g::Catlab.Graphs.BasicGraphs.Graph) at GraphCategories.jl:31 └ @ Core ~/.julia/packages/Catlab/cVAED/src/categorical_algebra/setcats/GraphCategories.jl:31 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = connected_component_projection_bfs(g::Catlab.Graphs.BasicGraphs.Graph) at GraphCategories.jl:33 └ @ Core ~/.julia/packages/Catlab/cVAED/src/categorical_algebra/setcats/GraphCategories.jl:33 ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = connected_component_projection_bfs(g::Catlab.Graphs.BasicGraphs.Graph) at GraphCategories.jl:36 └ @ Core ~/.julia/packages/Catlab/cVAED/src/categorical_algebra/setcats/GraphCategories.jl:36 Test Summary: | Pass Total Time Graphs | 211 211 2m33.2s Test Summary: | Pass Total Time BasicSets | 158 158 1m00.7s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 55 running 1 of 1 signal (10): User defined signal 1 Box at ./boot.jl:499 [inlined] already_inserted_ssa at ./../usr/share/julia/Compiler/src/ssair/passes.jl:363 [inlined] process_node! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1467 iterate_compact at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1955 iterate at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1877 [inlined] adce_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:2147 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1013 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_82569.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_80505.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4588 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7b106b2c0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x75f12f385233) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x75f12f37d15c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x75f12f370701) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x75f12f36fc51) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x75f12f36dc60) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x75f12f36530f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x75f149c3a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000075f12f3fc010 Total snapshots: 331. Utilization: 0% ╎331 @Base/client.jl:550 _start() ╎ 331 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 331 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 331 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 331 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 331 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 331 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 331 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 331 @Pkg/src/API.jl:157 test ╎ ╎ 331 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 331 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 331 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 331 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 331 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 331 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 331 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 331 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 331 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 331 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 331 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 331 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 331 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 331 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 331 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 331 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 331 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 331 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 331 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 331 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 331 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 331 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 331 @Base/…sk.jl:1228 wait() 330╎ ╎ ╎ ╎ ╎ ╎ ╎ 331 @Base/…sk.jl:1216 poptask(W::Base.Intr… [55] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Catlab/cVAED/test/categorical_algebra/pointwise/varacsetcats/Colimits.jl:121 j_cycle_fix_limited_83857.1 at /opt/julia/lib/julia/sys.so (unknown line) finishinfer! at ./../usr/share/julia/Compiler/src/typeinfer.jl:472 jfptr_finishinferNOT._83856.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:199 jfptr_finish_nocycle_80505.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4588 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 fmap at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/cats/freediagrams/FreeDiagrams.jl:65 #unpack##6 at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/pointwise/limits_colimits/LimitsColimits.jl:31 iterate at ./generator.jl:48 [inlined] _collect at ./array.jl:810 collect_similar at ./array.jl:732 unknown function (ip: 0x7b10349db2a6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 map at ./abstractarray.jl:3375 unknown function (ip: 0x7b1039fbaaa6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 unpack at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/pointwise/limits_colimits/LimitsColimits.jl:28 pointwise_colimit at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/pointwise/limits_colimits/Colimits.jl:93 macro expansion at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/pointwise/limits_colimits/Colimits.jl:60 [inlined] #colimit#7 at ./none:0 [inlined] colimit at ./none (unknown line) [inlined] #pushout#79 at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/cats/limits_colimits/Pushouts.jl:66 [inlined] pushout at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/cats/limits_colimits/Pushouts.jl:66 [inlined] #pushout#80 at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/cats/limits_colimits/Pushouts.jl:69 pushout at /home/pkgeval/.julia/packages/Catlab/cVAED/src/categorical_algebra/cats/limits_colimits/Pushouts.jl:69 unknown function (ip: 0x7b0fe30bd693) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #pushout#1863#68#78 at /home/pkgeval/.julia/packages/GATlab/DZoqr/src/syntax/TheoryInterface.jl:260 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #pushout#1863#77 at /home/pkgeval/.julia/packages/GATlab/DZoqr/src/syntax/TheoryInterface.jl:259 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 PkgEval terminated after 2724.64s: test duration exceeded the time limit