Package evaluation to test BinnedModels on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T17:56:28.610 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 6.01s ################################################################################ # Installation # Installing BinnedModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [fa1fc709] + BinnedModels v0.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [fa1fc709] + BinnedModels v0.2.0 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [b429d917] + DensityInterface v0.4.0 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [09ab397b] + StructArrays v0.7.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.69s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 12618.4 ms ✓ BinnedModels 1 dependency successfully precompiled in 24 seconds. 134 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 50 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 35.16s ################################################################################ # Testing # Testing BinnedModels Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_f8dJbq/Project.toml` [4c88cf16] + Aqua v0.8.16 [fa1fc709] + BinnedModels v0.2.0 [e30172f5] + Documenter v1.17.0 [fa1605e6] + MeasureBase v0.14.13 Updating `/tmp/jl_f8dJbq/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [4c88cf16] + Aqua v0.8.16 [dce04be8] + ArgCheck v2.5.0 [fa1fc709] + BinnedModels v0.2.0 [d360d2e6] + ChainRulesCore v1.26.1 [9e997f8a] + ChangesOfVariables v0.1.10 [944b1d66] + CodecZlib v0.7.8 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [e30172f5] + Documenter v1.17.0 [8e6b2b91] + FunctionChains v0.2.3 [d7ba0133] + Git v1.5.0 [b5f81e59] + IOCapture v1.0.0 [615f187c] + IfElse v0.1.1 [682c06a0] + JSON v1.6.1 [0e77f7df] + LazilyInitializedFields v1.3.0 ⌅ [2ab3a3ac] ↓ LogExpFunctions v1.0.1 ⇒ v0.3.29 [aa2f6b4e] + LogarithmicNumbers v1.4.1 [dbb5928d] + MappedArrays v0.4.3 [d0879d2d] + MarkdownAST v0.1.3 [fa1605e6] + MeasureBase v0.14.13 [77ba4419] + NaNMath v1.1.4 [69de0a69] + Parsers v2.8.6 [aea7be01] + PrecompileTools v1.3.4 [54e16d92] + PrettyPrinting v0.4.2 [2792f1a3] + RegistryInstances v0.1.0 [431bcebd] + SciMLPublic v1.0.1 [aedffcd0] + Static v1.4.0 [ec057cc2] + StructUtils v2.8.2 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.13 [2e619515] + Expat_jll v2.8.1+0 [020c3dae] + Git_LFS_jll v3.7.1+0 [f8c6e375] + Git_jll v2.54.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [9bd350c2] + OpenSSH_jll v10.3.1+0 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [3fa0cd96] + REPL v1.11.0 [6462fe0b] + Sockets v1.11.0 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_f8dJbq/Project.toml` [4c88cf16] Aqua v0.8.16 [fa1fc709] BinnedModels v0.2.0 [b429d917] DensityInterface v0.4.0 [31c24e10] Distributions v0.25.127 [e30172f5] Documenter v1.17.0 [8197267c] IntervalSets v0.7.14 [fa1605e6] MeasureBase v0.14.13 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [09ab397b] StructArrays v0.7.3 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_f8dJbq/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [fa1fc709] BinnedModels v0.2.0 [d360d2e6] ChainRulesCore v1.26.1 [9e997f8a] ChangesOfVariables v0.1.10 [944b1d66] CodecZlib v0.7.8 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [1a297f60] FillArrays v1.16.0 [8e6b2b91] FunctionChains v0.2.3 [d7ba0133] Git v1.5.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [0e77f7df] LazilyInitializedFields v1.3.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 [dbb5928d] MappedArrays v0.4.3 [d0879d2d] MarkdownAST v0.1.3 [fa1605e6] MeasureBase v0.14.13 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.4 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [54e16d92] PrettyPrinting v0.4.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [09ab397b] StructArrays v0.7.3 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Error: Unexpected error: /tmp/jl_YlsBERAl6P/done.log was not created, but precompilation exited └ @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:120 Persistent tasks: Test Failed at /home/pkgeval/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:39 Expression: !(has_persistent_tasks(package; kwargs...)) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_persistent_tasks(package::Base.PkgId; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:39 [3] test_persistent_tasks @ ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:35 [inlined] [4] #test_persistent_tasks#57 @ ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:44 [inlined] [5] test_persistent_tasks @ ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:43 [inlined] [6] macro expansion @ ~/.julia/packages/Aqua/h1qD0/src/Aqua.jl:109 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [8] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, piracies::Bool, persistent_tasks::Bool, undocumented_names::Bool) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/Aqua.jl:109 Precompiling packages... 4053.5 ms ✓ FunctionChains 967.8 ms ✓ FunctionChains → FunctionChainsChangesOfVariablesExt 9719.9 ms ✓ MeasureBase 3 dependencies successfully precompiled in 15 seconds. 56 already precompiled. 36 dependencies precompiled but different versions are currently loaded (Base64, CompilerSupportLibraries_jll, ConstructionBase, ConstructionBase → ConstructionBaseIntervalSetsExt, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, DensityInterface, DocStringExtensions, FillArrays, FillArrays → FillArraysStatisticsExt, InteractiveUtils, IntervalSets, IntervalSets → IntervalSetsRandomExt, IntervalSets → IntervalSetsStatisticsExt, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, InverseFunctions → InverseFunctionsTestExt, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, LogExpFunctions → LogExpFunctionsInverseFunctionsExt, Logging, Markdown, OpenLibm_jll, OpenSpecFun_jll, Preferences, Printf, Reexport, Serialization, SpecialFunctions, Statistics, StyledStrings, TOML, Test and UUIDs). Restart julia to access the new versions. Otherwise, 14 dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl:719 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Fail Total Time Package BinnedModels | 62 1 63 2m57.6s Aqua tests | 9 1 10 1m22.5s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.4s Stale dependencies | 1 1 7.2s Compat bounds | 4 4 0.7s Piracy | 1 1 0.3s Persistent tasks | 1 1 53.6s binning | 12 12 3.9s binning_algorithm | 36 36 4.3s binned_models | 4 4 4.7s Doctests: BinnedModels | 1 1 44.7s RNG of the outermost testset: Xoshiro(0x8ded49184409dfcb, 0x30b09be99ab77cac, 0xe09c91a4f9c7ff96, 0x25aac51fc5b7df7f, 0x8ab958ec5d1f7036) ERROR: LoadError: Some tests did not pass: 62 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BinnedModels/pnaGA/test/runtests.jl:5 Testing failed after 191.28s ERROR: LoadError: Package BinnedModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 267.78s: package has test failures