Package evaluation to test TransitionalMCMC on Julia 1.14.0-DEV.2309 (6e1a27e459*) started at 2026-06-06T15:40:23.402 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.82s ################################################################################ # Installation # Installing TransitionalMCMC... Resolving package versions... Installed Rmath_jll ─────────────── v0.5.1+0 Installed Adapt ─────────────────── v4.6.0 Installed FillArrays ────────────── v1.16.0 Installed AliasTables ───────────── v1.1.3 Installed ExprTools ─────────────── v0.1.10 Installed StatsBase ─────────────── v0.33.21 Installed HypergeometricFunctions ─ v0.3.28 Installed DataStructures ────────── v0.18.22 Installed OrderedCollections ────── v1.8.2 Installed DataAPI ───────────────── v1.16.0 Installed Statistics ────────────── v1.11.1 Installed StatsAPI ──────────────── v1.8.0 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed Compat ────────────────── v4.18.1 Installed TSVD ──────────────────── v0.4.4 Installed TimerOutputs ──────────── v0.5.29 Installed TransitionalMCMC ──────── v0.4.2 Installed IrrationalConstants ───── v0.2.6 Installed QuadGK ────────────────── v2.11.3 Installed LogExpFunctions ───────── v0.3.29 Installed StatsFuns ─────────────── v2.0.1 Installed WoodburyMatrices ──────── v1.1.0 Installed Rmath ─────────────────── v0.9.0 Installed Distributions ─────────── v0.25.126 Installed Reexport ──────────────── v1.2.2 Installed CovarianceEstimation ──── v0.2.13 Installed SpecialFunctions ──────── v2.8.0 Installed PtrArrays ─────────────── v1.4.0 Installed Missings ──────────────── v1.2.0 Installed DocStringExtensions ───── v0.9.5 Installed SortingAlgorithms ─────── v1.2.2 Installed Preferences ───────────── v1.5.2 Installed JLLWrappers ───────────── v1.8.0 Installed PDMats ────────────────── v0.11.35 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [5bc637a6] + TransitionalMCMC v0.4.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.6.0 [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.18.1 [587fd27a] + CovarianceEstimation v0.2.13 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.126 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌃ [90014a1f] + PDMats v0.11.35 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v2.0.1 [9449cd9e] + TSVD v0.4.4 [a759f4b9] + TimerOutputs v0.5.29 [5bc637a6] + TransitionalMCMC v0.4.2 [efce3f68] + WoodburyMatrices v1.1.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.89s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 6.4 s ✓ TestEnv 1 dependency successfully precompiled in 7 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 5.0 s ✓ MacroTools 0.6 s ✓ Reexport 0.9 s ✓ Adapt 1.1 s ✓ Statistics 1.1 s ✓ DataAPI 1.1 s ✓ ConstructionBase 2.6 s ✓ IrrationalConstants 0.6 s ✓ StatsAPI 151.0 s ✓ OrderedCollections 1.0 s ✓ InverseFunctions 0.8 s ✓ CompositionsBase 1.1 s ✓ DocStringExtensions 2.6 s ✓ Combinatorics 121.4 s ✓ FillArrays 0.8 s ✓ ExprTools 38.2 s ✓ PtrArrays 0.6 s ✓ CommonSolve 44.2 s ✓ PDMats 42.4 s ✓ WoodburyMatrices 1.6 s ✓ Compat 3.0 s ✓ Preferences 0.9 s ✓ TSVD 39.8 s ✓ Adapt → AdaptSparseArraysExt 42.1 s ✓ Statistics → SparseArraysExt 56.3 s ✓ Missings 0.6 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 39.3 s ✓ InverseFunctions → InverseFunctionsTestExt 1.4 s ✓ InverseFunctions → InverseFunctionsDatesExt 0.6 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.9 s ✓ LogExpFunctions 76.8 s ✓ FillArrays → FillArraysSparseArraysExt 41.1 s ✓ FillArrays → FillArraysStatisticsExt 43.4 s ✓ TimerOutputs 40.3 s ✓ AliasTables 76.4 s ✓ FillArrays → FillArraysPDMatsExt 0.7 s ✓ Compat → CompatLinearAlgebraExt 3.4 s ✓ JLLWrappers 7.5 s ✓ Accessors 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 271.9 s ✓ DataStructures 3.7 s ✓ Rmath_jll 3.8 s ✓ OpenSpecFun_jll 3.4 s ✓ Accessors → LinearAlgebraExt 38.8 s ✓ Accessors → TestExt 40.0 s ✓ SortingAlgorithms 43.2 s ✓ QuadGK 3.3 s ✓ Rmath 81.6 s ✓ SpecialFunctions 45.2 s ✓ Roots 212.7 s ✓ StatsBase 42.0 s ✓ HypergeometricFunctions 45.4 s ✓ CovarianceEstimation 40.6 s ✓ StatsFuns 36.3 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 92.5 s ✓ Distributions 43.6 s ✓ Distributions → DistributionsTestExt 47.7 s ✓ HypothesisTests 46.2 s ✓ TransitionalMCMC 58 dependencies successfully precompiled in 2036 seconds. 18 already precompiled. Precompilation completed after 2076.61s ################################################################################ # Testing # Testing TransitionalMCMC Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_F9L4qj/Project.toml` [09f84164] + HypothesisTests v0.11.7 [5bc637a6] + TransitionalMCMC v0.4.2 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_F9L4qj/Manifest.toml` [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.0 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.7 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [e2ba6199] + ExprTools v0.1.10 [09f84164] + HypothesisTests v0.11.7 [3587e190] + InverseFunctions v0.1.17 [1914dd2f] + MacroTools v0.5.16 [f2b01f46] + Roots v3.0.0 ⌅ [4c63d2b9] ↓ StatsFuns v2.0.1 ⇒ v1.5.2 [9449cd9e] + TSVD v0.4.4 [a759f4b9] + TimerOutputs v0.5.29 [5bc637a6] + TransitionalMCMC v0.4.2 [efce3f68] + WoodburyMatrices v1.1.0 [8dfed614] ~ Test ⇒ v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_F9L4qj/Project.toml` [31c24e10] Distributions v0.25.126 [09f84164] HypothesisTests v0.11.7 ⌅ [2913bbd2] StatsBase v0.33.21 [5bc637a6] TransitionalMCMC v0.4.2 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_F9L4qj/Manifest.toml` [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.0 [66dad0bd] AliasTables v1.1.3 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.7 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [587fd27a] CovarianceEstimation v0.2.13 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.126 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.7 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌃ [90014a1f] PDMats v0.11.35 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [4c63d2b9] StatsFuns v1.5.2 [9449cd9e] TSVD v0.4.4 [a759f4b9] TimerOutputs v0.5.29 [5bc637a6] TransitionalMCMC v0.4.2 [efce3f68] WoodburyMatrices v1.1.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Metropolis Hastings general | 8 8 21.1s Test Summary: | Pass Total Time Metropolis Hastings simple | 5 5 5.7s Himmelblau parallel: Error During Test at /home/pkgeval/.julia/packages/TransitionalMCMC/1JXf1/test/tmcmc.jl:93 Got exception outside of a @test TaskFailedException nested task error: Timed out waiting to read host:port string from worker. Stacktrace: [1] worker_from_id(pg::Distributed.ProcessGroup, i::Int64) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1118 [2] worker_from_id(i::Int64) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1115 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:559 [inlined] [4] remote_do(::Function, ::Int64; kwargs::@Kwargs{}) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:539 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:559 [inlined] [6] remote_do(::typeof(exit), ::Int64) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:539 [inlined] [7] kill(manager::Distributed.LocalManager, pid::Int64, config::WorkerConfig; profile_wait::Int64, exit_timeout::Int64, term_timeout::Int64) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:746 [8] kill(manager::Distributed.LocalManager, pid::Int64, config::WorkerConfig) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:743 [inlined] [9] create_worker(manager::Distributed.LocalManager, wconfig::WorkerConfig) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:621 [10] setup_launched_worker(manager::Distributed.LocalManager, wconfig::WorkerConfig, launched_q::Vector{Int64}) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:565 ┌[11] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:521 [inlined] ╰──── repeated 2 times [13] (::Distributed.var"##kw_body#addprocs_locked#0##->###2"{Vector{Int64}, Distributed.LocalManager, WorkerConfig})() @ Distributed task.jl:506 caused by: Timed out waiting to read host:port string from worker. Stacktrace: [1] read_worker_host_port(io::Base.PipeEndpoint) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:359 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:582 [inlined] [3] connect(manager::Distributed.LocalManager, pid::Int64, config::WorkerConfig) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:563 [4] create_worker(manager::Distributed.LocalManager, wconfig::WorkerConfig) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:618 [5] setup_launched_worker(manager::Distributed.LocalManager, wconfig::WorkerConfig, launched_q::Vector{Int64}) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:565 ┌[6] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:521 [inlined] ╰─── repeated 2 times [8] (::Distributed.var"##kw_body#addprocs_locked#0##->###2"{Vector{Int64}, Distributed.LocalManager, WorkerConfig})() @ Distributed task.jl:506 ...and 1 more exception. Stacktrace: [1] sync_end(c::Channel{Any}) @ Base task.jl:630 [2] macro expansion @ task.jl:663 [inlined] [3] addprocs_locked(manager::Distributed.LocalManager; kwargs::@Kwargs{exeflags::String}) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:506 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:465 [inlined] [5] addprocs(manager::Distributed.LocalManager; kwargs::@Kwargs{exeflags::String}) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:418 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:458 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:472 [inlined] [8] addprocs(np::Int64; restrict::Bool, kwargs::@Kwargs{exeflags::String}) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:447 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/managers.jl:469 [inlined] [10] top-level scope @ ~/.julia/packages/TransitionalMCMC/1JXf1/test/tmcmc.jl:1 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2241 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2415 [inlined] [13] macro expansion @ ~/.julia/packages/TransitionalMCMC/1JXf1/test/tmcmc.jl:93 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2241 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2415 [inlined] [16] macro expansion @ ~/.julia/packages/TransitionalMCMC/1JXf1/test/tmcmc.jl:94 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:327 [18] top-level scope @ ~/.julia/packages/TransitionalMCMC/1JXf1/test/runtests.jl:4 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:327 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core boot.jl:521 [22] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [23] _start() @ Base client.jl:596 Test Summary: | Pass Error Total Time TransitionalMCMC | 6 1 7 2m37.5s 1D | 1 1 39.1s 2D | 2 2 19.4s Himmelblau | 3 3 9.1s Himmelblau parallel | 1 1 1m29.8s RNG of the outermost testset: Xoshiro(0x34f899b1ae92008f, 0x1a761c138655b4d8, 0x482825cbad6db21f, 0x708655b537c8c4fc, 0x00d002db2b34fc96) ERROR: LoadError: Some tests did not pass: 6 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TransitionalMCMC/1JXf1/test/tmcmc.jl:1 in expression starting at /home/pkgeval/.julia/packages/TransitionalMCMC/1JXf1/test/runtests.jl:4 Testing failed after 241.64s ERROR: LoadError: Package TransitionalMCMC errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:326 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2476.97s: package tests unexpectedly errored