Package evaluation to test SubstitutionModels on Julia 1.14.0-DEV.2309 (6e1a27e459*) started at 2026-06-06T05:42:44.838


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 17.39s


################################################################################
# Installation
#

Installing SubstitutionModels...
   Resolving package versions...
   Installed StaticArraysCore ─── v1.4.4
   Installed StaticArrays ─────── v1.9.18
   Installed Preferences ──────── v1.5.2
   Installed BioSymbols ───────── v5.2.0
   Installed SubstitutionModels ─ v0.5.0
   Installed PrecompileTools ──── v1.3.4
    Updating `~/.julia/environments/v1.14/Project.toml`
  [8365b1bb] + SubstitutionModels v0.5.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [3c28c6f8] + BioSymbols v5.2.0
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [8365b1bb] + SubstitutionModels v0.5.0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.14.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0
  [4536629a] + OpenBLAS_jll v0.3.33+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 2.08s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling project...
   6.9 s  ✓ TestEnv
  1 dependency successfully precompiled in 7 seconds. 27 already precompiled.

Precompiling package dependencies...
Precompiling project...
   0.9 s  ✓ StaticArraysCore
   2.9 s  ✓ Preferences
   3.1 s  ✓ PrecompileTools
 351.2 s  ✓ StaticArrays
 123.8 s  ✓ BioSymbols
ERROR: LoadError: TypeError: in typeassert, expected SubstitutionModels.F81, got a value of type typeof(mod)
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/SubstitutionModels/GIGot/src/nucleic_acid/f81/abstract.jl:3
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:327
  [3] top-level scope
    @ ~/.julia/packages/SubstitutionModels/GIGot/src/SubstitutionModels.jl:14
  [4] include(mod::Module, _path::String)
    @ Base Base.jl:326
  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3296
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core boot.jl:521
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
  [9] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [11] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/SubstitutionModels/GIGot/src/nucleic_acid/f81/abstract.jl:3
in expression starting at /home/pkgeval/.julia/packages/SubstitutionModels/GIGot/src/SubstitutionModels.jl:1
in expression starting at stdin:5
              ✗ SubstitutionModels
  5 dependencies successfully precompiled in 585 seconds. 12 already precompiled.

Precompilation completed after 618.91s


################################################################################
# Testing
#

     Testing SubstitutionModels
      Status `/tmp/jl_jjsHSE/Project.toml`
  [3c28c6f8] BioSymbols v5.2.0
  [90137ffa] StaticArrays v1.9.18
  [8365b1bb] SubstitutionModels v0.5.0
  [37e2e46d] LinearAlgebra v1.14.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_jjsHSE/Manifest.toml`
  [3c28c6f8] BioSymbols v5.2.0
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [8365b1bb] SubstitutionModels v0.5.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.14.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.2+0
  [4536629a] OpenBLAS_jll v0.3.33+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
ERROR: LoadError: TypeError: in typeassert, expected SubstitutionModels.F81, got a value of type typeof(mod)
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/SubstitutionModels/GIGot/src/nucleic_acid/f81/abstract.jl:3
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:327
  [3] top-level scope
    @ ~/.julia/packages/SubstitutionModels/GIGot/src/SubstitutionModels.jl:14
  [4] include(mod::Module, _path::String)
    @ Base Base.jl:326
  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3296
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core boot.jl:521
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
  [9] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [11] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/SubstitutionModels/GIGot/src/nucleic_acid/f81/abstract.jl:3
in expression starting at /home/pkgeval/.julia/packages/SubstitutionModels/GIGot/src/SubstitutionModels.jl:1
in expression starting at stdin:5
  1 dependency had output during precompilation:
┌ SubstitutionModels
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

SubstitutionModels 
Failed to precompile SubstitutionModels [8365b1bb-bd83-58ee-a267-f2965fc81c73] to "/home/pkgeval/.julia/compiled/v1.14/SubstitutionModels/jl_6PlkSu" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/SubstitutionModels/GIGot/test/runtests.jl:1

Testing failed after 117.68s

ERROR: LoadError: Package SubstitutionModels errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247
  [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587
  [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
  [7] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
  [8] include(mod::Module, _path::String)
    @ Base Base.jl:326
  [9] exec_options(opts::Base.JLOptions)
    @ Base client.jl:355
 [10] _start()
    @ Base client.jl:596
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 777.7s: package fails to precompile