Package evaluation to test Clustering on Julia 1.14.0-DEV.2309 (6e1a27e459*) started at 2026-06-06T10:41:16.059 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.99s ################################################################################ # Installation # Installing Clustering... Resolving package versions... Installed DataAPI ───────────── v1.16.0 Installed Missings ──────────── v1.2.0 Installed Statistics ────────── v1.11.1 Installed DataStructures ────── v0.19.5 Installed LogExpFunctions ───── v1.0.1 Installed Preferences ───────── v1.5.2 Installed StatsAPI ──────────── v1.8.0 Installed AbstractTrees ─────── v0.4.5 Installed StaticArraysCore ──── v1.4.4 Installed Clustering ────────── v0.15.8 Installed SortingAlgorithms ─── v1.2.2 Installed PrecompileTools ───── v1.3.4 Installed StaticArrays ──────── v1.9.18 Installed AliasTables ───────── v1.1.3 Installed StatsBase ─────────── v0.34.11 Installed Distances ─────────── v0.10.12 Installed OrderedCollections ── v1.8.2 Installed DocStringExtensions ─ v0.9.5 Installed IrrationalConstants ─ v0.2.6 Installed NearestNeighbors ──── v0.4.27 Installed PtrArrays ─────────── v1.4.0 Updating `~/.julia/environments/v1.14/Project.toml` [aaaa29a8] + Clustering v0.15.8 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [aaaa29a8] + Clustering v0.15.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v1.0.1 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.27 ⌅ [bac558e1] + OrderedCollections v1.8.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 6.8 s ✓ TestEnv 1 dependency successfully precompiled in 7 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 1.0 s ✓ Statistics 1.1 s ✓ DataAPI 2.6 s ✓ IrrationalConstants 0.9 s ✓ StaticArraysCore 0.6 s ✓ StatsAPI 153.8 s ✓ OrderedCollections 1.1 s ✓ StableRNGs 1.1 s ✓ DocStringExtensions 79.9 s ✓ AbstractTrees 40.2 s ✓ PtrArrays 59.3 s ✓ TranscodingStreams 0.9 s ✓ DelimitedFiles 2.8 s ✓ Preferences 43.0 s ✓ Statistics → SparseArraysExt 58.6 s ✓ Missings 1.8 s ✓ Distances 169.7 s ✓ DataStructures 2.0 s ✓ LogExpFunctions 40.6 s ✓ AliasTables 20.3 s ✓ CodecZlib 3.1 s ✓ PrecompileTools 41.0 s ✓ Distances → DistancesSparseArraysExt 28.5 s ✓ SortingAlgorithms 332.2 s ✓ StaticArrays 175.6 s ✓ StatsBase 39.2 s ✓ StaticArrays → StaticArraysStatisticsExt 121.1 s ✓ NearestNeighbors 82.4 s ✓ Clustering 28 dependencies successfully precompiled in 1504 seconds. 16 already precompiled. Precompilation completed after 1537.47s ################################################################################ # Testing # Testing Clustering Status `/tmp/jl_zfnaDV/Project.toml` [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [b8a86587] NearestNeighbors v0.4.27 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.11 [37e2e46d] LinearAlgebra v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zfnaDV/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.6 [2ab3a3ac] LogExpFunctions v1.0.1 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.27 ⌅ [bac558e1] OrderedCollections v1.8.2 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [a2af1166] SortingAlgorithms v1.2.2 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.11 [3bb67fe8] TranscodingStreams v0.11.3 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [4536629a] OpenBLAS_jll v0.3.33+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Runing tests: * seeding.jl ... Test Summary: | Pass Total Time seeding | 64 64 24.8s * kmeans.jl ... Iters objv objv-change | affected ------------------------------------------------------------- 0 4.989350e-01 1 2.494675e-01 -2.494675e-01 | 0 2 2.494675e-01 0.000000e+00 | 0 K-means converged with 2 iterations (objv = 0.24946750839021092) K-means converged with 2 iterations (objv = 1.2788678154974682) ┌ Warning: The clustering cost increased at iteration #2 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 Test Summary: | Pass Total Time kmeans() (k-means) | 130 130 2m41.0s * kmedoids.jl ... Iters objv objv-change ----------------------------------------------------- 0 1.633511e+00 1 1.633511e+00 0.000000e+00 K-medoids converged with 1 iterations (objv = 1.6335111163381681) K-medoids converged with 1 iterations (objv = 1.1562794866641528) Test Summary: | Pass Total Time kmedoids() (k-medoids) | 42 42 1m04.3s * affprop.jl ... Iters objv-change | exemplars ----------------------------------------------------- 1 1.6749e+00 | 4 2 8.3744e-01 | 4 3 4.1872e-01 | 4 4 2.0936e-01 | 4 5 1.0468e-01 | 4 6 5.2340e-02 | 4 [ Info: Affinity propagation converged with 6 iterations: 4 exemplars. [ Info: Affinity propagation converged with 6 iterations: 4 exemplars. Test Summary: | Pass Total Time affinityprop() (affinity propagation) | 79 79 26.2s * dbscan.jl ... n=0 samples: Error During Test at /home/pkgeval/.julia/packages/Clustering/M6mjF/test/dbscan.jl:53 Got exception outside of a @test TypeError: in typeassert, expected Vector{StaticArraysCore.SVector{2, Float64}}, got a value of type Vector{Any} Stacktrace: [1] copy_svec(::Type{Float64}, data::Matrix{Float64}, ::Val{2}) @ NearestNeighbors ~/.julia/packages/NearestNeighbors/8wgyo/src/utilities.jl:92 [2] NearestNeighbors.KDTree(data::Matrix{Float64}, metric::Euclidean; leafsize::Int64, storedata::Bool, reorder::Bool, reorderbuffer::Matrix{Float64}, parallel::Bool) @ NearestNeighbors ~/.julia/packages/NearestNeighbors/8wgyo/src/kd_tree.jl:93 [3] NearestNeighbors.KDTree(data::Matrix{Float64}, metric::Euclidean) @ NearestNeighbors ~/.julia/packages/NearestNeighbors/8wgyo/src/kd_tree.jl:85 [inlined] [4] macro expansion @ ~/.julia/packages/Clustering/M6mjF/src/dbscan.jl:104 [inlined] [5] dbscan(points::Matrix{Float64}, radius::Int64; metric::Euclidean, min_neighbors::Int64, min_cluster_size::Int64, nntree_kwargs::@Kwargs{}) @ Clustering ~/.julia/packages/Clustering/M6mjF/src/dbscan.jl:53 [6] macro expansion @ ~/.julia/packages/Clustering/M6mjF/src/dbscan.jl:95 [inlined] [7] dbscan(points::Matrix{Float64}, radius::Int64) @ Clustering ~/.julia/packages/Clustering/M6mjF/src/dbscan.jl:53 [8] top-level scope @ ~/.julia/packages/Clustering/M6mjF/test/dbscan.jl:5 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2241 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2415 [inlined] [11] macro expansion @ ~/.julia/packages/Clustering/M6mjF/test/dbscan.jl:16 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2241 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2415 [inlined] [14] macro expansion @ ~/.julia/packages/Clustering/M6mjF/test/dbscan.jl:53 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2241 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2415 [inlined] [17] macro expansion @ ~/.julia/packages/Clustering/M6mjF/test/dbscan.jl:56 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:327 [19] top-level scope @ ~/.julia/packages/Clustering/M6mjF/test/runtests.jl:32 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:327 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core boot.jl:521 [23] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [24] _start() @ Base client.jl:596 Test Summary: | Pass Error Total Time dbscan() (DBSCAN clustering) | 59 1 60 37.5s Argument checks | 5 5 2.3s Simple 2D tests | 7 1 8 11.4s n=3 samples | 3 3 7.3s n=2 samples | 2 2 0.2s n=1 samples | 2 2 0.0s n=0 samples | 1 1 3.7s clustering synthetic data with 3 clusters | 26 26 9.8s detecting outliers (#190) | 9 9 6.3s normal points | 12 12 7.7s RNG of the outermost testset: Xoshiro(0x0d65ccc506adec0f, 0xb3f86d2e0528c2d1, 0x2e47be77205c521d, 0x75eebeb76f4b0769, 0x4a3d03a6c30302f2) ERROR: LoadError: Some tests did not pass: 59 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Clustering/M6mjF/test/dbscan.jl:5 in expression starting at /home/pkgeval/.julia/packages/Clustering/M6mjF/test/runtests.jl:29 Testing failed after 563.1s ERROR: LoadError: Package Clustering errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:326 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2155.29s: package tests unexpectedly errored