Package evaluation of RPkg on Julia 1.13.0-DEV.1191 (63a270f4d4*) started at 2025-09-23T10:08:01.313


################################################################################
# Set-up
#


Set-up completed after 0.14s


################################################################################
# Installation
#

Installing RPkg...
   Resolving package versions...
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed VersionParsing ────────────── v1.3.0
   Installed InlineStrings ─────────────── v1.4.5
   Installed DataStructures ────────────── v0.18.22
   Installed AliasTables ───────────────── v1.1.3
   Installed HypergeometricFunctions ───── v0.3.28
   Installed RCall ─────────────────────── v0.13.18
   Installed StatsModels ───────────────── v0.7.7
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed DataAPI ───────────────────── v1.16.0
   Installed OrderedCollections ────────── v1.8.1
   Installed Compat ────────────────────── v4.18.0
   Installed StatsBase ─────────────────── v0.34.6
   Installed Statistics ────────────────── v1.11.1
   Installed RPkg ──────────────────────── v0.1.0
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed DataValueInterfaces ───────── v1.0.0
   Installed StatsAPI ──────────────────── v1.7.1
   Installed SentinelArrays ────────────── v1.4.8
   Installed IrrationalConstants ───────── v0.2.4
   Installed Conda ─────────────────────── v1.10.2
   Installed WinReg ────────────────────── v1.0.0
   Installed StringManipulation ────────── v0.4.1
   Installed PrecompileTools ───────────── v1.3.3
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed Parsers ───────────────────── v2.8.3
   Installed Rmath ─────────────────────── v0.8.0
   Installed Requires ──────────────────── v1.3.1
   Installed LogExpFunctions ───────────── v0.3.29
   Installed StatsFuns ─────────────────── v1.5.0
   Installed JSON ──────────────────────── v0.21.4
   Installed Tables ────────────────────── v1.12.1
   Installed PtrArrays ─────────────────── v1.3.0
   Installed Reexport ──────────────────── v1.2.2
   Installed Missings ──────────────────── v1.2.0
   Installed Preferences ───────────────── v1.5.0
   Installed SpecialFunctions ──────────── v2.5.1
   Installed PrettyTables ──────────────── v3.0.10
   Installed PooledArrays ──────────────── v1.4.3
   Installed JLLWrappers ───────────────── v1.7.1
   Installed TableTraits ───────────────── v1.0.1
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Crayons ───────────────────── v4.1.1
   Installed DataFrames ────────────────── v1.8.0
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed CategoricalArrays ─────────── v0.10.8
   Installed DocStringExtensions ───────── v0.9.5
  Installing 2 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact OpenSpecFun 194.9 KiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [5d58af2d] + RPkg v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
⌅ [324d7699] + CategoricalArrays v0.10.8
  [34da2185] + Compat v4.18.0
  [8f4d0f93] + Conda v1.10.2
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.0
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.5
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v0.21.4
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.0.10
  [43287f4e] + PtrArrays v1.3.0
⌅ [6f49c342] + RCall v0.13.18
  [5d58af2d] + RPkg v0.1.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.5.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.6
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.7
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [81def892] + VersionParsing v1.3.0
  [1b915085] + WinReg v1.0.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.2+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.67.1+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log`
    Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3084689b18f9e5e817a6ce9a83a7654d8ad0f2f6/build.log`

Installation completed after 135.26s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   1868.4 ms  ✓ InlineStrings
    897.1 ms  ✓ Reexport
   1156.3 ms  ✓ Statistics
    905.6 ms  ✓ DataAPI
   2129.4 ms  ✓ IrrationalConstants
    822.1 ms  ✓ DataValueInterfaces
    867.2 ms  ✓ StatsAPI
   1223.1 ms  ✓ Requires
   1336.2 ms  ✓ OrderedCollections
   1469.2 ms  ✓ InvertedIndices
   1428.0 ms  ✓ DocStringExtensions
   1275.5 ms  ✓ ShiftedArrays
   1004.5 ms  ✓ VersionParsing
    828.5 ms  ✓ WinReg
    794.3 ms  ✓ PtrArrays
    760.5 ms  ✓ IteratorInterfaceExtensions
    768.1 ms  ✓ LaTeXStrings
   1866.2 ms  ✓ Crayons
   4215.1 ms  ✓ SentinelArrays
   1190.7 ms  ✓ Compat
   1185.6 ms  ✓ Preferences
   1386.3 ms  ✓ Statistics → SparseArraysExt
   1004.3 ms  ✓ Missings
   1053.9 ms  ✓ PooledArrays
   1464.1 ms  ✓ LogExpFunctions
    972.9 ms  ✓ AliasTables
    789.4 ms  ✓ TableTraits
    892.9 ms  ✓ Compat → CompatLinearAlgebraExt
   1243.2 ms  ✓ JLLWrappers
    959.0 ms  ✓ PrecompileTools
   7217.8 ms  ✓ CategoricalArrays
   1635.4 ms  ✓ Tables
   3809.8 ms  ✓ DataStructures
   1401.0 ms  ✓ Rmath_jll
   1357.8 ms  ✓ OpenSpecFun_jll
   2923.9 ms  ✓ StringManipulation
  16734.2 ms  ✓ Parsers
   1162.2 ms  ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt
   1756.5 ms  ✓ SortingAlgorithms
   1604.2 ms  ✓ Rmath
   5254.1 ms  ✓ SpecialFunctions
  39479.4 ms  ✓ PrettyTables
   3963.8 ms  ✓ JSON
   1036.6 ms  ✓ InlineStrings → ParsersExt
   5286.8 ms  ✓ StatsBase
   2561.5 ms  ✓ HypergeometricFunctions
  87178.9 ms  ✓ DataFrames
   1747.0 ms  ✓ Conda
   1351.3 ms  ✓ CategoricalArrays → CategoricalArraysJSONExt
   3142.2 ms  ✓ StatsFuns
   4634.3 ms  ✓ StatsModels
  12764.6 ms  ✓ RCall
              ✗ RPkg
  52 dependencies successfully precompiled in 256 seconds. 28 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

RPkg 

Failed to precompile RPkg [5d58af2d-7d6a-4ad4-9195-74ef913580e2] to "/home/pkgeval/.julia/compiled/v1.13/RPkg/jl_XmrNSv" (ProcessExited(1)).
ERROR: LoadError: could not load symbol "SET_SYMVALUE":
/home/pkgeval/.julia/conda/3/x86_64/lib/R/lib/libR.so: undefined symbol: SET_SYMVALUE
Stacktrace:
  [1] set_last_value(s::Ptr{RCall.VecSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/methods.jl:588
  [2] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:126
  [3] reval(str::String, env::RCall.RObject{RCall.EnvSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:136
  [4] top-level scope
    @ ~/.julia/packages/RPkg/i1spQ/src/RPkg.jl:71
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3069
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2915
 [10] include_string
    @ ./loading.jl:2925 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/src/RPkg.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 262.39s



################################################################################
# Loading
#

Loading RPkg...
Precompiling packages...
Info Given RPkg was explicitly requested, output will be shown live 
ERROR: LoadError: could not load symbol "SET_SYMVALUE":
/home/pkgeval/.julia/conda/3/x86_64/lib/R/lib/libR.so: undefined symbol: SET_SYMVALUE
Stacktrace:
  [1] set_last_value(s::Ptr{RCall.VecSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/methods.jl:588
  [2] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:126
  [3] reval(str::String, env::RCall.RObject{RCall.EnvSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:136
  [4] top-level scope
    @ ~/.julia/packages/RPkg/i1spQ/src/RPkg.jl:71
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3069
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2915
 [10] include_string
    @ ./loading.jl:2925 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/src/RPkg.jl:1
in expression starting at stdin:5
              ✗ RPkg
  0 dependencies successfully precompiled in 11 seconds. 80 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

RPkg 

Failed to precompile RPkg [5d58af2d-7d6a-4ad4-9195-74ef913580e2] to "/home/pkgeval/.julia/compiled/v1.13/RPkg/jl_SskZIm" (ProcessExited(1)).
ERROR: LoadError: could not load symbol "SET_SYMVALUE":
/home/pkgeval/.julia/conda/3/x86_64/lib/R/lib/libR.so: undefined symbol: SET_SYMVALUE
Stacktrace:
  [1] set_last_value(s::Ptr{RCall.VecSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/methods.jl:588
  [2] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:126
  [3] reval(str::String, env::RCall.RObject{RCall.EnvSxp})
    @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:136
  [4] top-level scope
    @ ~/.julia/packages/RPkg/i1spQ/src/RPkg.jl:71
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3069
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2915
 [10] include_string
    @ ./loading.jl:2925 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/src/RPkg.jl:1
in expression starting at stdin:

Loading failed after 12.63s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using RPkg'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:330
 [7] _start()
   @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 451.43s: package fails to precompile