Package evaluation to test ProtPlot on Julia 1.13.0-alpha2.30 (5abf758bb1*) started at 2026-01-09T20:25:04.296 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.36s ################################################################################ # Installation # Installing ProtPlot... Resolving package versions... Installed libaom_jll ────────────────── v3.13.1+0 Installed ImageIO ───────────────────── v0.6.9 Installed MosaicViews ───────────────── v0.3.4 Installed libass_jll ────────────────── v0.17.4+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed PolygonOps ────────────────── v0.1.2 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Extents ───────────────────── v0.1.6 Installed OrderedCollections ────────── v1.8.1 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed NearestNeighbors ──────────── v0.4.26 Installed Backboner ─────────────────── v0.12.2 Installed QuadGK ────────────────────── v2.11.2 Installed FileIO ────────────────────── v1.17.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.6.0+0 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed AdaptivePredicates ────────── v1.2.0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed ScopedValues ──────────────── v1.5.0 Installed Tables ────────────────────── v1.12.1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed EnumX ─────────────────────── v1.0.5 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed InverseFunctions ──────────── v0.1.17 Installed Preferences ───────────────── v1.5.1 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Imath_jll ─────────────────── v3.2.2+0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.3 Installed TableTraits ───────────────── v1.0.1 Installed ProteinChains ─────────────── v0.5.3 Installed SortingAlgorithms ─────────── v1.2.2 Installed Grisu ─────────────────────── v1.0.2 Installed RangeArrays ───────────────── v0.3.2 Installed CRlibm ────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed Inflate ───────────────────── v0.1.5 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.2 Installed DataStructures ────────────── v0.19.3 Installed OpenEXR_jll ───────────────── v3.4.4+0 Installed Packing ───────────────────── v0.5.1 Installed FillArrays ────────────────── v1.15.0 Installed libaec_jll ────────────────── v1.1.4+0 Installed AbstractTrees ─────────────── v0.4.5 Installed Quaternions ───────────────── v0.7.7 Installed LazyModules ───────────────── v0.3.1 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed CodecZlib ─────────────────── v0.7.8 Installed UnicodeFun ────────────────── v0.4.1 Installed StatsBase ─────────────────── v0.34.9 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed DataValueInterfaces ───────── v1.0.0 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed CEnum ─────────────────────── v0.5.0 Installed Observables ───────────────── v0.5.5 Installed Libffi_jll ────────────────── v3.4.7+0 Installed MathTeXEngine ─────────────── v0.6.7 Installed ProtPlot ──────────────────── v0.5.18 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.6 Installed StructUtils ───────────────── v2.6.1 Installed GPUArraysCore ─────────────── v0.2.0 Installed libpng_jll ────────────────── v1.6.53+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed Contour ───────────────────── v0.6.3 Installed ColorVectorSpace ──────────── v0.11.0 Installed Makie ─────────────────────── v0.24.8 Installed SimpleTraits ──────────────── v0.9.5 Installed RoundingEmulator ──────────── v0.2.1 Installed ImageMetadata ─────────────── v0.9.10 Installed Dierckx_jll ───────────────── v0.2.0+0 Installed OpenMPI_jll ───────────────── v5.0.9+0 Installed StableRNGs ────────────────── v1.0.4 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed Interpolations ────────────── v0.16.2 Installed libsixel_jll ──────────────── v1.10.5+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed Scratch ───────────────────── v1.3.0 Installed FFMPEG_jll ────────────────── v8.0.1+0 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed ShaderAbstractions ────────── v0.5.0 Installed PDMats ────────────────────── v0.11.37 Installed DocStringExtensions ───────── v0.9.5 Installed ImageCore ─────────────────── v0.10.5 Installed AxisArrays ────────────────── v0.4.8 Installed PNGFiles ──────────────────── v0.4.4 Installed JpegTurbo ─────────────────── v0.1.6 Installed FreeType ──────────────────── v4.1.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed PkgVersion ────────────────── v0.3.3 Installed StackViews ────────────────── v0.1.2 Installed RelocatableFolders ────────── v1.0.1 Installed MPICH_jll ─────────────────── v4.3.2+0 Installed KernelDensity ─────────────── v0.6.10 Installed AliasTables ───────────────── v1.1.3 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.2 Installed Netpbm ────────────────────── v1.1.1 Installed NNlib ─────────────────────── v0.9.32 Installed ImageAxes ─────────────────── v0.6.12 Installed StaticArraysCore ──────────── v1.4.4 Installed ComputePipeline ───────────── v0.1.6 Installed Colors ────────────────────── v0.13.1 Installed StaticArrays ──────────────── v1.9.16 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed AbstractFFTs ──────────────── v1.5.0 Installed ColorSchemes ──────────────── v3.31.0 Installed AxisAlgorithms ────────────── v1.1.0 Installed QOI ───────────────────────── v1.0.2 Installed Glib_jll ──────────────────── v2.86.2+0 Installed ColorTypes ────────────────── v0.12.1 Installed BaseDirs ──────────────────── v1.3.2 Installed LogExpFunctions ───────────── v0.3.29 Installed Requires ──────────────────── v1.3.1 Installed Rmath ─────────────────────── v0.9.0 Installed Parsers ───────────────────── v2.8.3 Installed FreeTypeAbstraction ───────── v0.10.8 Installed FilePaths ─────────────────── v0.9.0 Installed UnsafeAtomics ─────────────── v0.3.0 Installed JSON ──────────────────────── v1.3.0 Installed BioGenerics ───────────────── v0.1.5 Installed Distributions ─────────────── v0.25.123 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed StatsFuns ─────────────────── v1.5.2 Installed SignedDistanceFields ──────── v0.4.1 Installed Unitful ───────────────────── v1.27.0 Installed GridLayoutBase ────────────── v0.11.2 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.2+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed ExactPredicates ───────────── v2.2.9 Installed IterTools ─────────────────── v1.10.0 Installed GeometryBasics ────────────── v0.5.10 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed TiffImages ────────────────── v0.11.6 Installed Dierckx ───────────────────── v0.5.4 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed FilePathsBase ─────────────── v0.9.24 Installed Graphs ────────────────────── v1.13.3 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.4.0 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed PeriodicTable ─────────────── v1.2.1 Installed BioStructures ─────────────── v4.7.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed TriplotBase ───────────────── v0.1.0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.4 Installed Compat ────────────────────── v4.18.1 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed EarCut_jll ────────────────── v2.2.4+0 Installed TensorCore ────────────────── v0.1.1 Installed ImageBase ─────────────────── v0.1.7 Installed Statistics ────────────────── v1.11.1 Installed Atomix ────────────────────── v1.1.2 Installed StatsAPI ──────────────────── v1.8.0 Installed PrecompileTools ───────────── v1.3.3 Installed StructArrays ──────────────── v0.7.2 Installed ProgressMeter ─────────────── v1.11.0 Installed WebP ──────────────────────── v0.1.3 Installed OffsetArrays ──────────────── v1.17.0 Installed Ratios ────────────────────── v0.4.5 Installed BioSymbols ────────────────── v5.2.0 Installed ChainRulesCore ────────────── v1.26.0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed LAME_jll ──────────────────── v3.100.3+0 Installed KernelAbstractions ────────── v0.9.39 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed IntervalArithmetic ────────── v1.0.2 Installed Isoband ───────────────────── v0.1.1 Installed PtrArrays ─────────────────── v1.3.0 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed AssigningSecondaryStructure ─ v0.5.2 Installed FixedPointNumbers ─────────── v0.8.5 Installed IntervalSets ──────────────── v0.7.13 Installed SpecialFunctions ──────────── v2.6.1 Installed Animations ────────────────── v0.4.2 Installed MPIPreferences ────────────── v0.1.11 Installed Showoff ───────────────────── v1.0.3 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed FFTW ──────────────────────── v1.10.0 Installed Rotations ─────────────────── v1.7.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed Automa ────────────────────── v1.1.0 Installed HDF5 ──────────────────────── v0.17.2 Installed DelaunayTriangulation ─────── v1.6.6 Installing 60 artifacts Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Expat 283.3 KiB Installed artifact Ogg 250.3 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact OpenEXR 1.4 MiB Installed artifact Cairo 2.2 MiB Installed artifact libass 427.8 KiB Installed artifact Bzip2 503.5 KiB Installed artifact libpng 329.0 KiB Installed artifact libwebp 2.6 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact XZ 1.5 MiB Installed artifact libaom 6.4 MiB Installed artifact FriBidi 78.9 KiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact x265 1.4 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact FFMPEG 11.7 MiB Installed artifact FFTW 2.2 MiB Installed artifact libvorbis 271.0 KiB Installed artifact LZO 208.9 KiB Installed artifact EarCut 80.5 KiB Installed artifact Dierckx 149.2 KiB Installed artifact libaec 49.6 KiB Installed artifact libsixel 177.3 KiB Installed artifact Libtiff 2.3 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact MakieAssets 24.9 MiB Installed artifact Glib 7.7 MiB Installed artifact MPICH 3.3 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Libmount 6.5 MiB Installed artifact Opus 960.8 KiB Installed artifact Pixman 372.2 KiB Installed artifact x264 2.1 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Giflib 154.6 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Imath 184.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Libuuid 3.7 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Libffi 44.2 KiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact isoband 25.7 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact HDF5 5.7 MiB Installed artifact XML2 2.5 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [77b3afcc] + ProtPlot v0.5.18 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [8ed43e74] + AssigningSecondaryStructure v0.5.2 [a9b6321e] + Atomix v1.1.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [9ac9c2a2] + Backboner v0.12.2 [18cc8868] + BaseDirs v1.3.2 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [95dc2771] + ComputePipeline v0.1.6 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.6 [39dd38d3] + Dierckx v0.5.4 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [8fc22ac5] + FilePaths v0.9.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [46192b85] + GPUArraysCore v0.2.0 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.13.3 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [f67ccb44] + HDF5 v0.17.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [b835a17e] + JpegTurbo v0.1.6 [63c18a36] + KernelAbstractions v0.9.39 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [ee78f7c6] + Makie v0.24.8 [dbb5928d] + MappedArrays v0.4.3 [0a4f8689] + MathTeXEngine v0.6.7 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [872c559c] + NNlib v0.9.32 [b8a86587] + NearestNeighbors v0.4.26 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [77b3afcc] + ProtPlot v0.5.18 ⌃ [b8e8f2a5] + ProteinChains v0.5.3 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.2 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.7 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6038ab10] + Rotations v1.7.1 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 32.21s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4961.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 1467.35s ################################################################################ # Testing # Testing ProtPlot Status `/tmp/jl_0O9nG3/Project.toml` [de9282ab] BioStructures v4.7.0 [e9467ef8] GLMakie v0.13.8 [77b3afcc] ProtPlot v0.5.18 ⌃ [b8e8f2a5] ProteinChains v0.5.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_0O9nG3/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [8ed43e74] AssigningSecondaryStructure v0.5.2 [a9b6321e] Atomix v1.1.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [9ac9c2a2] Backboner v0.12.2 [18cc8868] BaseDirs v1.3.2 [47718e42] BioGenerics v0.1.5 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 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v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1326 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm13ConstantRangeC1Ejb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: (nil)) at (unknown file) #= 75.3 ms =# precompile(Tuple{Type{Base.Dict{Symbol, Any}}, Pair{Symbol, String}, Vararg{Pair{A, B} where B where A}}) # recompile #= 117.7 ms =# precompile(Tuple{typeof(Base.Docs.doc!), Module, Base.Docs.Binding, Base.Docs.DocStr, Any}) # recompile #= 268.8 ms =# precompile(Tuple{typeof(Base.annotate_meta_def_or_block), Any, Symbol}) # recompile ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_34528.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b78832f5d20 Total snapshots: 398. Utilization: 0% ╎398 @Base/task.jl:1168 wait_forever() 397╎ 398 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_34528.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 25657429 (Pool: 25656173; Big: 1256); GC: 36 [1326] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GLMakie/vdrwE/src/precompiles.jl:60 jl_svecref at /source/src/julia.h:1186 [inlined] has_concrete_supertype at /source/src/jltypes.c:1337 jl_type_equality_is_identity at /source/src/jltypes.c:1376 obviously_unequal at /source/src/subtype.c:461 ijl_types_equal at /source/src/subtype.c:2328 jl_specializations_get_linfo_ at /source/src/gf.c:236 cache_method at /source/src/gf.c:1667 ml_matches at /source/src/gf.c:5155 ml_matches at /source/src/gf.c:4847 [inlined] ijl_matching_methods at /source/src/gf.c:3234 [inlined] ijl_matching_methods at /source/src/gf.c:3221 _methods_by_ftype at ./runtime_internals.jl:1600 [inlined] _findall at ./../usr/share/julia/Compiler/src/methodtable.jl:97 [inlined] #findall#5 at ./../usr/share/julia/Compiler/src/methodtable.jl:70 [inlined] findall at ./../usr/share/julia/Compiler/src/methodtable.jl:70 [inlined] #findall#7 at ./../usr/share/julia/Compiler/src/methodtable.jl:105 findall at ./../usr/share/julia/Compiler/src/methodtable.jl:102 [inlined] find_simple_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:386 jfptr_find_simple_method_matches_3819.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 tojlinvoke89303.1 at /opt/julia/lib/julia/sys.so (unknown line) j_find_simple_method_matches_82906.1 at /opt/julia/lib/julia/sys.so (unknown line) #find_method_matches#131 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:348 [inlined] find_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:342 [inlined] abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:120 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2902 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2895 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3055 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3073 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3429 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3823 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3780 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4329 jfptr_typeinf_local_86972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4486 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1386 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1575 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1584 jfptr_typeinf_ext_toplevel_87172.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_type_infer at /source/src/gf.c:463 jl_compile_method_internal at /source/src/gf.c:3636 ijl_compile_method_instance at /source/src/gf.c:4005 ijl_compile_hint at /source/src/gf.c:4029 precompile at ./loading.jl:4355 precompile at ./loading.jl:4350 jfptr_precompile_37167.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2988 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3048 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7bdbfb91b352) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_eval_module_expr at /source/src/toplevel.c:248 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:650 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2988 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3048 include at ./Base.jl:309 __require_prelocked at ./loading.jl:2811 _require_prelocked at ./loading.jl:2570 macro expansion at ./loading.jl:2498 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2462 jfptr___require_44908.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:908 require at ./loading.jl:2438 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_28575.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2988 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3048 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_48555.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_77926.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7bdbfd19a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 17270484 (Pool: 17269500; Big: 984); GC: 22 PkgEval terminated after 2721.72s: test duration exceeded the time limit