Package evaluation to test PhyloClustering on Julia 1.12.4 (01a2eadb04*) started at 2026-01-09T20:30:31.760


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# Set-up
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Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.11s


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# Installation
#

Installing PhyloClustering...
   Resolving package versions...
   Installed JpegTurbo_jll ─────────────── v3.1.4+0
   Installed x265_jll ──────────────────── v4.1.0+0
   Installed BioGenerics ───────────────── v0.1.5
   Installed AxisArrays ────────────────── v0.4.8
   Installed ScikitLearnBase ───────────── v0.5.0
   Installed ImageIO ───────────────────── v0.6.9
   Installed TiffImages ────────────────── v0.11.6
   Installed libfdk_aac_jll ────────────── v2.0.4+0
   Installed OffsetArrays ──────────────── v1.17.0
   Installed PhyloClustering ───────────── v0.2.0
   Installed Libmount_jll ──────────────── v2.41.2+0
   Installed JpegTurbo ─────────────────── v0.1.6
   Installed LERC_jll ──────────────────── v4.0.1+0
   Installed HypergeometricFunctions ───── v0.3.28
   Installed PNGFiles ──────────────────── v0.4.4
   Installed StatsFuns ─────────────────── v1.5.2
   Installed FFTW ──────────────────────── v1.10.0
   Installed Preferences ───────────────── v1.5.1
   Installed Opus_jll ──────────────────── v1.6.0+0
   Installed RelocatableFolders ────────── v1.0.1
   Installed ParallelKMeans ────────────── v1.1.0
   Installed StatisticalTraits ─────────── v3.5.0
   Installed Sixel ─────────────────────── v0.1.5
   Installed StableHashTraits ──────────── v1.3.4
   Installed Permutations ──────────────── v0.4.23
   Installed Multisets ─────────────────── v0.4.5
   Installed PDMats ────────────────────── v0.11.35
   Installed EarCut_jll ────────────────── v2.2.4+0
   Installed ProgressMeter ─────────────── v1.11.0
   Installed StaticArrays ──────────────── v1.9.16
   Installed Contour ───────────────────── v0.6.3
   Installed Grisu ─────────────────────── v1.0.2
   Installed OpenEXR ───────────────────── v0.3.3
   Installed InlineStrings ─────────────── v1.4.5
   Installed Formatting ────────────────── v0.4.3
   Installed PlotUtils ─────────────────── v1.4.4
   Installed NearestNeighbors ──────────── v0.4.26
   Installed BaseDirs ──────────────────── v1.3.2
   Installed EnumX ─────────────────────── v1.0.5
   Installed CEnum ─────────────────────── v0.5.0
   Installed DelimitedFiles ────────────── v1.9.1
   Installed FileIO ────────────────────── v1.17.1
   Installed InvertedIndices ───────────── v1.3.1
   Installed BioSequences ──────────────── v3.5.1
   Installed Cairo_jll ─────────────────── v1.18.5+0
   Installed Fontconfig_jll ────────────── v2.17.1+0
   Installed Statistics ────────────────── v1.11.1
   Installed IntelOpenMP_jll ───────────── v2025.2.0+0
   Installed GLM ───────────────────────── v1.9.2
   Installed Mods ──────────────────────── v2.2.6
   Installed Netpbm ────────────────────── v1.1.1
   Installed SignedDistanceFields ──────── v0.4.1
   Installed Polynomials ───────────────── v4.0.21
   Installed DataFrames ────────────────── v1.8.1
   Installed FilePaths ─────────────────── v0.8.3
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed RoundingEmulator ──────────── v0.2.1
   Installed ColorSchemes ──────────────── v3.31.0
   Installed Distances ─────────────────── v0.10.12
   Installed TupleTools ────────────────── v1.6.0
   Installed Missings ──────────────────── v1.2.0
   Installed FiniteDiff ────────────────── v2.29.0
   Installed SIMD ──────────────────────── v3.7.2
   Installed TriplotBase ───────────────── v0.1.0
   Installed IrrationalConstants ───────── v0.2.6
   Installed Showoff ───────────────────── v1.0.3
   Installed Giflib_jll ────────────────── v5.2.3+0
   Installed Functors ──────────────────── v0.4.12
   Installed AbstractLattices ──────────── v0.3.1
   Installed Pango_jll ─────────────────── v1.57.0+0
   Installed PolygonOps ────────────────── v0.1.2
   Installed SimpleRandom ──────────────── v0.3.2
   Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0
   Installed NLopt ─────────────────────── v1.2.1
   Installed JSON ──────────────────────── v1.3.0
   Installed PtrArrays ─────────────────── v1.3.0
   Installed ADTypes ───────────────────── v1.21.0
   Installed MathTeXEngine ─────────────── v0.5.7
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed QOI ───────────────────────── v1.0.2
   Installed SpecialFunctions ──────────── v2.6.1
   Installed XZ_jll ────────────────────── v5.8.2+0
   Installed SentinelArrays ────────────── v1.4.9
   Installed HarfBuzz_jll ──────────────── v8.5.1+0
   Installed isoband_jll ───────────────── v0.2.3+0
   Installed SimpleGraphs ──────────────── v0.8.7
   Installed PkgVersion ────────────────── v0.3.3
   Installed StaticArraysCore ──────────── v1.4.4
   Installed PikaParser ────────────────── v0.6.1
   Installed NaNMath ───────────────────── v1.1.3
   Installed BioSymbols ────────────────── v5.2.0
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed WorkerUtilities ───────────── v1.6.1
   Installed StringViews ───────────────── v1.3.6
   Installed FriBidi_jll ───────────────── v1.0.17+0
   Installed WebP ──────────────────────── v0.1.3
   Installed Clustering ────────────────── v0.15.8
   Installed UnicodeFun ────────────────── v0.4.1
   Installed NLSolversBase ─────────────── v7.10.0
   Installed TranscodingStreams ────────── v0.11.3
   Installed Graphics ──────────────────── v1.1.3
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed UnsafeArrays ──────────────── v1.0.8
   Installed x264_jll ──────────────────── v10164.0.1+0
   Installed Ratios ────────────────────── v0.4.5
   Installed WeakRefStrings ────────────── v1.4.2
   Installed StatsModels ───────────────── v0.7.7
   Installed ImageMetadata ─────────────── v0.9.10
   Installed DataStructures ────────────── v0.18.22
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed MappedArrays ──────────────── v0.4.3
   Installed FreeType ──────────────────── v4.1.1
   Installed CommonSubexpressions ──────── v0.3.1
   Installed Colors ────────────────────── v0.12.11
   Installed PaddedViews ───────────────── v0.5.12
   Installed StatsAPI ──────────────────── v1.8.0
   Installed Compat ────────────────────── v4.18.1
   Installed CodecZlib ─────────────────── v0.7.8
   Installed GridLayoutBase ────────────── v0.10.2
   Installed MosaicViews ───────────────── v0.3.4
   Installed StatsBase ─────────────────── v0.33.21
   Installed LinearAlgebraX ────────────── v0.2.10
   Installed LazyModules ───────────────── v0.3.1
   Installed Automa ────────────────────── v1.1.0
   Installed libpng_jll ────────────────── v1.6.53+0
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed libaom_jll ────────────────── v3.13.1+0
   Installed StructTypes ───────────────── v1.11.0
   Installed Scratch ───────────────────── v1.3.0
   Installed DiffRules ─────────────────── v1.15.1
   Installed ColorTypes ────────────────── v0.11.5
   Installed ImageCore ─────────────────── v0.10.5
   Installed oneTBB_jll ────────────────── v2022.0.0+1
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
   Installed SimplePartitions ──────────── v0.3.3
   Installed TensorCore ────────────────── v0.1.1
   Installed Zstd_jll ──────────────────── v1.5.7+1
   Installed Twiddle ───────────────────── v1.1.2
   Installed TableTraits ───────────────── v1.0.1
   Installed FreeTypeAbstraction ───────── v0.10.8
   Installed Expat_jll ─────────────────── v2.7.3+0
   Installed Isoband ───────────────────── v0.1.1
   Installed DiffResults ───────────────── v1.1.0
   Installed PrettyTables ──────────────── v3.1.2
   Installed Inflate ───────────────────── v0.1.5
   Installed WeakKeyIdDicts ────────────── v0.1.0
   Installed PositiveFactorizations ────── v0.2.4
   Installed Imath_jll ─────────────────── v3.2.2+0
   Installed Parsers ───────────────────── v2.8.3
   Installed Extents ───────────────────── v0.1.6
   Installed Setfield ──────────────────── v1.1.2
   Installed MKL_jll ───────────────────── v2025.2.0+0
   Installed PooledArrays ──────────────── v1.4.3
   Installed Format ────────────────────── v1.3.7
   Installed Libtiff_jll ───────────────── v4.7.2+0
   Installed Packing ───────────────────── v0.5.1
   Installed JLLWrappers ───────────────── v1.7.1
   Installed AbstractFFTs ──────────────── v1.5.0
   Installed ConstructionBase ──────────── v1.6.0
   Installed Libffi_jll ────────────────── v3.4.7+0
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed ColorVectorSpace ──────────── v0.10.0
   Installed AbstractTrees ─────────────── v0.4.5
   Installed OrderedCollections ────────── v1.8.1
   Installed ExactPredicates ───────────── v2.2.9
   Installed Ogg_jll ───────────────────── v1.3.6+0
   Installed ChainRulesCore ────────────── v1.26.0
   Installed KernelDensity ─────────────── v0.6.10
   Installed Combinatorics ─────────────── v1.1.0
   Installed CSV ───────────────────────── v0.10.15
   Installed ArrayInterface ────────────── v7.22.0
   Installed Reexport ──────────────────── v1.2.2
   Installed Interpolations ────────────── v0.16.2
   Installed LogExpFunctions ───────────── v0.3.29
   Installed LineSearches ──────────────── v7.5.1
   Installed RingLists ─────────────────── v0.2.9
   Installed Animations ────────────────── v0.4.2
   Installed AliasTables ───────────────── v1.1.3
   Installed StackViews ────────────────── v0.1.2
   Installed RangeArrays ───────────────── v0.3.2
   Installed FFTW_jll ──────────────────── v3.3.11+0
   Installed MacroTools ────────────────── v0.5.16
   Installed IntervalArithmetic ────────── v1.0.2
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed GeoFormatTypes ────────────── v0.4.5
   Installed Libuuid_jll ───────────────── v2.41.2+0
   Installed SimpleTraits ──────────────── v0.9.5
   Installed MultivariateStats ─────────── v0.10.3
   Installed DocStringExtensions ───────── v0.9.5
   Installed OpenEXR_jll ───────────────── v3.4.4+0
   Installed DifferentiationInterface ──── v0.7.13
   Installed Crayons ───────────────────── v4.1.1
   Installed ColorBrewer ───────────────── v0.4.2
   Installed FASTX ─────────────────────── v2.1.7
   Installed ScientificTypesBase ───────── v3.0.0
   Installed StableRNGs ────────────────── v1.0.4
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed libass_jll ────────────────── v0.17.4+0
   Installed Adapt ─────────────────────── v4.4.0
   Installed Pixman_jll ────────────────── v0.44.2+0
   Installed Rmath ─────────────────────── v0.9.0
   Installed NLopt_jll ─────────────────── v2.10.0+0
   Installed XML2_jll ──────────────────── v2.15.1+0
   Installed Arpack_jll ────────────────── v3.5.2+0
   Installed IntegerMathUtils ──────────── v0.1.3
   Installed ImageBase ─────────────────── v0.1.7
   Installed IntervalSets ──────────────── v0.7.13
   Installed MLJModelInterface ─────────── v1.12.1
   Installed Xorg_xtrans_jll ───────────── v1.6.0+0
   Installed FFMPEG_jll ────────────────── v8.0.1+0
   Installed Cairo ─────────────────────── v1.1.1
   Installed IndirectArrays ────────────── v1.0.0
   Installed GeometryBasics ────────────── v0.4.11
   Installed IterTools ─────────────────── v1.10.0
   Installed Tables ────────────────────── v1.12.1
   Installed MakieCore ─────────────────── v0.7.3
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed DataAPI ───────────────────── v1.16.0
   Installed CairoMakie ────────────────── v0.11.9
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed RecipesBase ───────────────── v1.3.4
   Installed ShaderAbstractions ────────── v0.4.1
   Installed Primes ────────────────────── v0.5.7
   Installed LAME_jll ──────────────────── v3.100.3+0
   Installed Optim ─────────────────────── v1.13.3
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed GettextRuntime_jll ────────── v0.22.4+0
   Installed PrecompileTools ───────────── v1.3.3
   Installed StructArrays ──────────────── v0.6.21
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Glib_jll ──────────────────── v2.86.2+0
   Installed Arpack ────────────────────── v0.5.4
   Installed DelaunayTriangulation ─────── v0.8.12
   Installed libvorbis_jll ─────────────── v1.3.8+0
   Installed PhyloNetworks ─────────────── v0.16.4
   Installed libsixel_jll ──────────────── v1.10.5+0
   Installed Libglvnd_jll ──────────────── v1.7.1+1
   Installed FilePathsBase ─────────────── v0.9.24
   Installed FillArrays ────────────────── v1.15.0
   Installed AxisAlgorithms ────────────── v1.1.0
   Installed ForwardDiff ───────────────── v1.3.1
   Installed ImageAxes ─────────────────── v0.6.12
   Installed CRlibm ────────────────────── v1.0.2
   Installed QuadGK ────────────────────── v2.11.2
   Installed Xorg_libX11_jll ───────────── v1.8.12+0
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed Requires ──────────────────── v1.3.1
   Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0
   Installed Observables ───────────────── v0.5.5
   Installed CRlibm_jll ────────────────── v1.0.1+0
   Installed LightXML ──────────────────── v0.9.3
   Installed GeoInterface ──────────────── v1.4.1
   Installed Distributions ─────────────── v0.25.123
   Installed GaussianMixtures ──────────── v0.3.14
   Installed libwebp_jll ───────────────── v1.6.0+0
   Installed WoodburyMatrices ──────────── v1.0.0
   Installed StructUtils ───────────────── v2.6.1
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed SimplePolynomials ─────────── v0.2.18
   Installed StringManipulation ────────── v0.4.2
   Installed Makie ─────────────────────── v0.20.8
  Installing 57 artifacts
   Installed artifact Xorg_libXau             36.6 KiB
   Installed artifact EarCut                  80.5 KiB
   Installed artifact libsixel                177.3 KiB
   Installed artifact NLopt                   322.7 KiB
   Installed artifact Zstd                    646.0 KiB
   Installed artifact libass                  427.8 KiB
   Installed artifact Rmath                   121.9 KiB
   Installed artifact XZ                      1.5 MiB
   Installed artifact libwebp                 2.6 MiB
   Installed artifact Xorg_libXext            699.9 KiB
   Installed artifact libvorbis               271.0 KiB
   Installed artifact XML2                    2.2 MiB
   Installed artifact FreeType2               1.5 MiB
   Installed artifact Imath                   184.9 KiB
   Installed artifact libfdk_aac              2.8 MiB
   Installed artifact GettextRuntime          543.0 KiB
   Installed artifact Giflib                  154.6 KiB
   Installed artifact Graphite2               120.2 KiB
   Installed artifact LERC                    272.9 KiB
   Installed artifact Ogg                     250.3 KiB
   Installed artifact Bzip2                   503.5 KiB
   Installed artifact HarfBuzz                1.7 MiB
   Installed artifact Xorg_libXdmcp           67.7 KiB
   Installed artifact Arpack                  138.3 KiB
   Installed artifact LZO                     208.9 KiB
   Installed artifact FFMPEG                  11.7 MiB
   Installed artifact LLVMOpenMP              661.6 KiB
   Installed artifact FFTW                    2.2 MiB
   Installed artifact JpegTurbo               1.4 MiB
   Installed artifact libaom                  6.4 MiB
   Installed artifact Fontconfig              984.8 KiB
   Installed artifact Pango                   2.0 MiB
   Installed artifact Cairo                   2.2 MiB
   Installed artifact Xorg_xtrans             48.2 KiB
   Installed artifact isoband                 25.7 KiB
   Installed artifact FriBidi                 78.9 KiB
   Installed artifact x264                    2.1 MiB
   Installed artifact Expat                   283.3 KiB
   Installed artifact Pixman                  372.2 KiB
   Installed artifact Libiconv                1.9 MiB
   Installed artifact CRlibm                  169.5 KiB
   Installed artifact Opus                    960.8 KiB
   Installed artifact libpng                  329.0 KiB
   Installed artifact Libffi                  44.2 KiB
   Installed artifact Xorg_libXrender         435.9 KiB
   Installed artifact Libtiff                 2.3 MiB
   Installed artifact OpenBLASConsistentFPCSR 9.9 MiB
   Installed artifact OpenSpecFun             194.9 KiB
   Installed artifact Libglvnd                833.5 KiB
   Installed artifact x265                    1.4 MiB
   Installed artifact LAME                    292.5 KiB
   Installed artifact OpenEXR                 1.4 MiB
   Installed artifact Glib                    7.7 MiB
   Installed artifact Libuuid                 3.7 MiB
   Installed artifact Xorg_libxcb             2.1 MiB
   Installed artifact Libmount                6.5 MiB
   Installed artifact Xorg_libX11             13.9 MiB
    Updating `~/.julia/environments/v1.12/Project.toml`
  [2e4ec7c6] + PhyloClustering v0.2.0
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [47edcb42] + ADTypes v1.21.0
  [621f4979] + AbstractFFTs v1.5.0
  [398f06c4] + AbstractLattices v0.3.1
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [27a7e980] + Animations v0.4.2
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.22.0
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.8
  [18cc8868] + BaseDirs v1.3.2
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.5.1
  [3c28c6f8] + BioSymbols v5.2.0
  [fa961155] + CEnum v0.5.0
  [96374032] + CRlibm v1.0.2
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
⌅ [13f3f980] + CairoMakie v0.11.9
  [d360d2e6] + ChainRulesCore v1.26.0
  [aaaa29a8] + Clustering v0.15.8
  [944b1d66] + CodecZlib v0.7.8
  [a2cac450] + ColorBrewer v0.4.2
  [35d6a980] + ColorSchemes v3.31.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌃ [c3611d14] + ColorVectorSpace v0.10.0
⌅ [5ae59095] + Colors v0.12.11
  [861a8166] + Combinatorics v1.1.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [927a84f5] + DelaunayTriangulation v0.8.12
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.13
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.123
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [429591f6] + ExactPredicates v2.2.9
  [411431e0] + Extents v0.1.6
  [c2308a5c] + FASTX v2.1.7
  [7a1cc6ca] + FFTW v1.10.0
  [5789e2e9] + FileIO v1.17.1
⌅ [8fc22ac5] + FilePaths v0.8.3
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [6a86dc24] + FiniteDiff v2.29.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [59287772] + Formatting v0.4.3
  [f6369f11] + ForwardDiff v1.3.1
  [b38be410] + FreeType v4.1.1
  [663a7486] + FreeTypeAbstraction v0.10.8
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.2
  [cc18c42c] + GaussianMixtures v0.3.14
  [68eda718] + GeoFormatTypes v0.4.5
⌃ [cf35fbd7] + GeoInterface v1.4.1
⌅ [5c1252a2] + GeometryBasics v0.4.11
  [a2bd30eb] + Graphics v1.1.3
⌅ [3955a311] + GridLayoutBase v0.10.2
  [42e2da0e] + Grisu v1.0.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [82e4d734] + ImageIO v0.6.9
  [bc367c6b] + ImageMetadata v0.9.10
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [18e54dd8] + IntegerMathUtils v0.1.3
  [a98d9a8b] + Interpolations v0.16.2
  [d1acc4aa] + IntervalArithmetic v1.0.2
  [8197267c] + IntervalSets v0.7.13
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [b835a17e] + JpegTurbo v0.1.6
  [5ab0869b] + KernelDensity v0.6.10
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.3
⌃ [d3d80556] + LineSearches v7.5.1
  [9b3f67b0] + LinearAlgebraX v0.2.10
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e80e1ace] + MLJModelInterface v1.12.1
  [1914dd2f] + MacroTools v0.5.16
⌅ [ee78f7c6] + Makie v0.20.8
⌅ [20f20a25] + MakieCore v0.7.3
  [dbb5928d] + MappedArrays v0.4.3
⌅ [0a4f8689] + MathTeXEngine v0.5.7
  [e1d29d7a] + Missings v1.2.0
  [7475f97c] + Mods v2.2.6
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.5
  [6f286f6a] + MultivariateStats v0.10.3
⌅ [d41bc354] + NLSolversBase v7.10.0
  [76087f3c] + NLopt v1.2.1
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.26
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [429524aa] + Optim v1.13.3
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [f57f5aa1] + PNGFiles v0.4.4
  [19eb6ba3] + Packing v0.5.1
  [5432bcbf] + PaddedViews v0.5.12
  [42b8e9d4] + ParallelKMeans v1.1.0
  [69de0a69] + Parsers v2.8.3
  [2ae35dd2] + Permutations v0.4.23
  [2e4ec7c6] + PhyloClustering v0.2.0
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [3bbf5609] + PikaParser v0.6.1
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.4.4
  [647866c9] + PolygonOps v0.1.2
⌃ [f27b6e38] + Polynomials v4.0.21
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [08abe8d2] + PrettyTables v3.1.2
  [27ebfcd6] + Primes v0.5.7
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.2
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [286e9d63] + RingLists v0.2.9
  [79098fc4] + Rmath v0.9.0
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.7.2
  [30f210dd] + ScientificTypesBase v3.0.0
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.9
  [efcf1570] + Setfield v1.1.2
⌅ [65257c39] + ShaderAbstractions v0.4.1
  [1277b4bf] + ShiftedArrays v2.0.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.1
  [55797a34] + SimpleGraphs v0.8.7
  [ec83eff0] + SimplePartitions v0.3.3
  [cc47b68c] + SimplePolynomials v0.2.18
  [a6525b86] + SimpleRandom v0.3.2
  [699a6c99] + SimpleTraits v0.9.5
  [45858cf5] + Sixel v0.1.5
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
⌅ [c5dd0088] + StableHashTraits v1.3.4
  [860ef19b] + StableRNGs v1.0.4
  [cae243ae] + StackViews v0.1.2
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.2
  [3eaba693] + StatsModels v0.7.7
  [892a3eda] + StringManipulation v0.4.2
  [354b36f9] + StringViews v1.3.6
⌅ [09ab397b] + StructArrays v0.6.21
  [856f2bd8] + StructTypes v1.11.0
  [ec057cc2] + StructUtils v2.6.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [62fd8b95] + TensorCore v0.1.1
  [731e570b] + TiffImages v0.11.6
  [3bb67fe8] + TranscodingStreams v0.11.3
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.6.0
  [7200193e] + Twiddle v1.1.2
  [1cfade01] + UnicodeFun v0.4.1
  [c4a57d5a] + UnsafeArrays v1.0.8
  [ecbed89c] + WeakKeyIdDicts v0.1.0
  [ea10d353] + WeakRefStrings v1.4.2
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.2+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [83423d85] + Cairo_jll v1.18.5+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.7.3+0
  [b22a6f82] + FFMPEG_jll v8.0.1+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [59f7168a] + Giflib_jll v5.2.3+0
  [7746bdde] + Glib_jll v2.86.2+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [905a6f67] + Imath_jll v3.2.2+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [aacddb02] + JpegTurbo_jll v3.1.4+0
  [c1c5ebd0] + LAME_jll v3.100.3+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
⌅ [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [89763e89] + Libtiff_jll v4.7.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [856f044c] + MKL_jll v2025.2.0+0
  [079eb43e] + NLopt_jll v2.10.0+0
  [e7412a2a] + Ogg_jll v1.3.6+0
  [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] + OpenEXR_jll v3.4.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [91d4177d] + Opus_jll v1.6.0+0
  [36c8627f] + Pango_jll v1.57.0+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [02c8fc9c] + XML2_jll v2.15.1+0
  [ffd25f8a] + XZ_jll v5.8.2+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.13.1+0
  [0ac62f75] + libass_jll v0.17.4+0
  [f638f0a6] + libfdk_aac_jll v2.0.4+0
  [b53b4c65] + libpng_jll v1.6.53+0
  [075b6546] + libsixel_jll v1.10.5+0
  [f27f6e37] + libvorbis_jll v1.3.8+0
  [c5f90fcd] + libwebp_jll v1.6.0+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
⌅ [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [8bf52ea8] + CRC32c v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.1
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+0
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.44.0+1
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 31.88s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4441.5 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 26 already precompiled.
  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:306
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:317
│     [9] _start()
│       @ Base ./client.jl:550
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   2180.1 ms  ✓ Combinatorics
    798.8 ms  ✓ RangeArrays
   1184.1 ms  ✓ StringViews
   7709.9 ms  ✓ BaseDirs
    847.7 ms  ✓ ScientificTypesBase
   1026.2 ms  ✓ AbstractFFTs
    814.5 ms  ✓ LaTeXStrings
    950.2 ms  ✓ PositiveFactorizations
    806.4 ms  ✓ IndirectArrays
    760.7 ms  ✓ PolygonOps
    713.4 ms  ✓ IteratorInterfaceExtensions
    834.2 ms  ✓ TensorCore
    887.3 ms  ✓ GeoFormatTypes
    985.7 ms  ✓ WorkerUtilities
    831.1 ms  ✓ StatsAPI
    696.6 ms  ✓ AbstractLattices
   1449.7 ms  ✓ ADTypes
    863.4 ms  ✓ Contour
   3595.7 ms  ✓ CEnum
   1663.9 ms  ✓ OffsetArrays
   1195.5 ms  ✓ UnsafeArrays
   1047.3 ms  ✓ TriplotBase
   2501.5 ms  ✓ Format
   1873.9 ms  ✓ FillArrays
    802.1 ms  ✓ IntegerMathUtils
   1070.2 ms  ✓ Statistics
   1153.5 ms  ✓ IterTools
   7132.0 ms  ✓ MacroTools
   4098.8 ms  ✓ Grisu
    839.5 ms  ✓ ShiftedArrays
   3810.7 ms  ✓ OrderedCollections
   3697.1 ms  ✓ Observables
   1153.3 ms  ✓ Requires
    742.2 ms  ✓ DataValueInterfaces
    830.7 ms  ✓ EnumX
    909.8 ms  ✓ StableRNGs
    764.4 ms  ✓ Reexport
   1104.3 ms  ✓ DocStringExtensions
   1964.0 ms  ✓ InlineStrings
   1218.2 ms  ✓ AbstractTrees
   1403.7 ms  ✓ Twiddle
   5280.1 ms  ✓ IrrationalConstants
    958.2 ms  ✓ IntervalSets
    902.7 ms  ✓ RoundingEmulator
    980.4 ms  ✓ Extents
    802.1 ms  ✓ PtrArrays
   1254.6 ms  ✓ TranscodingStreams
   3613.0 ms  ✓ NaNMath
   3513.2 ms  ✓ LazyModules
   3750.6 ms  ✓ Multisets
    959.4 ms  ✓ DelimitedFiles
   1031.5 ms  ✓ RingLists
    790.3 ms  ✓ InvertedIndices
    985.1 ms  ✓ Inflate
   3863.8 ms  ✓ ConstructionBase
   3686.7 ms  ✓ Mods
    800.4 ms  ✓ DataAPI
   4603.5 ms  ✓ Crayons
   4024.6 ms  ✓ Functors
    923.8 ms  ✓ StaticArraysCore
    968.7 ms  ✓ TupleTools
   1011.4 ms  ✓ MappedArrays
    863.8 ms  ✓ WeakKeyIdDicts
   1838.6 ms  ✓ ProgressMeter
   1187.6 ms  ✓ Formatting
   1769.0 ms  ✓ PDMats
   1348.7 ms  ✓ WoodburyMatrices
   2016.3 ms  ✓ SentinelArrays
   4215.0 ms  ✓ StructTypes
   4107.2 ms  ✓ StructUtils
    970.9 ms  ✓ Scratch
   1195.1 ms  ✓ Preferences
   3705.9 ms  ✓ Compat
   3009.4 ms  ✓ UnicodeFun
   4061.8 ms  ✓ PkgVersion
   1078.1 ms  ✓ Permutations
    866.3 ms  ✓ StatisticalTraits
    735.3 ms  ✓ TableTraits
   4480.4 ms  ✓ DifferentiationInterface
    836.3 ms  ✓ StackViews
    911.4 ms  ✓ PaddedViews
   1434.5 ms  ✓ FillArrays → FillArraysSparseArraysExt
   1112.9 ms  ✓ Primes
   1521.7 ms  ✓ SignedDistanceFields
   5799.0 ms  ✓ FixedPointNumbers
   3696.4 ms  ✓ Distances
    961.1 ms  ✓ ScikitLearnBase
   1333.3 ms  ✓ Statistics → SparseArraysExt
    879.4 ms  ✓ FillArrays → FillArraysStatisticsExt
   1566.5 ms  ✓ CommonSubexpressions
   2989.0 ms  ✓ SimpleTraits
    814.0 ms  ✓ Showoff
   2749.6 ms  ✓ MakieCore
    789.1 ms  ✓ Ratios
    946.6 ms  ✓ Adapt
   8926.8 ms  ✓ FileIO
   1476.7 ms  ✓ PikaParser
   1826.9 ms  ✓ LogExpFunctions
   1258.5 ms  ✓ IntervalSets → IntervalSetsRandomExt
    818.1 ms  ✓ IntervalSets → IntervalSetsStatisticsExt
   1037.8 ms  ✓ AliasTables
   3815.1 ms  ✓ BioGenerics
    907.9 ms  ✓ CodecZlib
    780.7 ms  ✓ ConstructionBase → ConstructionBaseIntervalSetsExt
    776.0 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
    813.1 ms  ✓ ADTypes → ADTypesConstructionBaseExt
    997.6 ms  ✓ PooledArrays
   1976.3 ms  ✓ GeoInterface
   3742.9 ms  ✓ Missings
   1129.7 ms  ✓ DiffResults
   2019.3 ms  ✓ FillArrays → FillArraysPDMatsExt
   1657.8 ms  ✓ AxisAlgorithms
   1102.3 ms  ✓ RelocatableFolders
   1143.4 ms  ✓ JLLWrappers
    852.9 ms  ✓ PrecompileTools
    883.5 ms  ✓ Compat → CompatLinearAlgebraExt
   2787.8 ms  ✓ MLJModelInterface
   4437.2 ms  ✓ Tables
   1246.8 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
    970.5 ms  ✓ MosaicViews
   4744.5 ms  ✓ ColorTypes
   1308.6 ms  ✓ Distances → DistancesSparseArraysExt
    859.8 ms  ✓ Ratios → RatiosFixedPointNumbersExt
   1268.9 ms  ✓ Adapt → AdaptSparseArraysExt
   3868.2 ms  ✓ ArrayInterface
    842.0 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
   1528.8 ms  ✓ AxisArrays
   3007.8 ms  ✓ Setfield
   1395.0 ms  ✓ Graphite2_jll
   1375.9 ms  ✓ Libmount_jll
   1382.3 ms  ✓ LLVMOpenMP_jll
   1372.6 ms  ✓ Bzip2_jll
   1379.8 ms  ✓ Rmath_jll
   1375.0 ms  ✓ Xorg_libXau_jll
   1373.6 ms  ✓ libpng_jll
   1390.9 ms  ✓ libfdk_aac_jll
   1384.3 ms  ✓ Imath_jll
   4627.2 ms  ✓ IntelOpenMP_jll
   1354.9 ms  ✓ Giflib_jll
   1383.3 ms  ✓ LAME_jll
   1353.7 ms  ✓ LERC_jll
   1378.1 ms  ✓ EarCut_jll
   1510.5 ms  ✓ CRlibm_jll
   1843.4 ms  ✓ JpegTurbo_jll
   1727.8 ms  ✓ XZ_jll
   1669.9 ms  ✓ Ogg_jll
   1389.8 ms  ✓ NLopt_jll
   4736.8 ms  ✓ oneTBB_jll
   1409.8 ms  ✓ Xorg_libXdmcp_jll
   1393.0 ms  ✓ x265_jll
   1355.9 ms  ✓ x264_jll
   1343.5 ms  ✓ Arpack_jll
   1419.5 ms  ✓ libaom_jll
   1385.4 ms  ✓ Zstd_jll
   1351.1 ms  ✓ Expat_jll
   1356.6 ms  ✓ LZO_jll
   1371.7 ms  ✓ Opus_jll
   1223.8 ms  ✓ Xorg_xtrans_jll
   1356.6 ms  ✓ Libiconv_jll
   1503.0 ms  ✓ Libffi_jll
   1355.5 ms  ✓ isoband_jll
   1346.4 ms  ✓ FFTW_jll
   1373.8 ms  ✓ OpenSpecFun_jll
   1323.9 ms  ✓ Libuuid_jll
   1359.1 ms  ✓ FriBidi_jll
   1354.1 ms  ✓ OpenBLASConsistentFPCSR_jll
  17251.2 ms  ✓ StaticArrays
   3071.4 ms  ✓ RecipesBase
   3455.7 ms  ✓ StringManipulation
   2544.8 ms  ✓ BioSymbols
  19126.5 ms  ✓ SIMD
  21321.7 ms  ✓ Parsers
   3611.3 ms  ✓ DataStructures
   2174.4 ms  ✓ FilePathsBase
   4227.9 ms  ✓ ChainRulesCore
   3791.1 ms  ✓ StructArrays
    796.9 ms  ✓ StructUtils → StructUtilsTablesExt
   9642.7 ms  ✓ StableHashTraits
   5362.3 ms  ✓ QOI
   6458.6 ms  ✓ ColorVectorSpace
   7998.5 ms  ✓ Colors
   1232.0 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
    751.8 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   1388.1 ms  ✓ Pixman_jll
   1379.6 ms  ✓ FreeType2_jll
   1516.9 ms  ✓ Rmath
   1340.1 ms  ✓ OpenEXR_jll
   1130.7 ms  ✓ CRlibm
   1398.1 ms  ✓ libsixel_jll
   1464.6 ms  ✓ libvorbis_jll
   2168.4 ms  ✓ NLopt
   9369.9 ms  ✓ MKL_jll
   1603.9 ms  ✓ Xorg_libxcb_jll
   1729.7 ms  ✓ Arpack
   1501.6 ms  ✓ Libtiff_jll
   1483.3 ms  ✓ XML2_jll
   1377.2 ms  ✓ GettextRuntime_jll
    855.4 ms  ✓ Isoband
   5076.0 ms  ✓ SpecialFunctions
   1359.3 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1397.8 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   1248.8 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   1310.7 ms  ✓ Adapt → AdaptStaticArraysExt
  39245.9 ms  ✓ Polynomials
   1228.1 ms  ✓ IntervalSets → IntervalSetsRecipesBaseExt
  42188.2 ms  ✓ PrettyTables
  12304.3 ms  ✓ BioSequences
  24224.3 ms  ✓ Automa
   9548.8 ms  ✓ JSON
    929.3 ms  ✓ InlineStrings → ParsersExt
   1673.7 ms  ✓ SortingAlgorithms
   5566.7 ms  ✓ QuadGK
   4326.4 ms  ✓ SimplePartitions
  60421.9 ms  ✓ TiffImages
   1081.9 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
   1656.9 ms  ✓ FilePaths
   3902.2 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
    881.4 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
    843.1 ms  ✓ ADTypes → ADTypesChainRulesCoreExt
    853.9 ms  ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt
    864.7 ms  ✓ Distances → DistancesChainRulesCoreExt
   3372.2 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
    869.7 ms  ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt
   3987.3 ms  ✓ StaticArrays → StaticArraysChainRulesCoreExt
    830.2 ms  ✓ StructArrays → StructArraysAdaptExt
   1297.9 ms  ✓ StructArrays → StructArraysSparseArraysExt
   4235.0 ms  ✓ StructArrays → StructArraysStaticArraysExt
    954.0 ms  ✓ StructArrays → StructArraysLinearAlgebraExt
   3905.1 ms  ✓ Graphics
   1349.6 ms  ✓ Animations
  36580.3 ms  ✓ ImageCore
   8692.2 ms  ✓ ColorSchemes
   1276.8 ms  ✓ FiniteDiff
   1812.7 ms  ✓ FreeType
   1535.8 ms  ✓ Fontconfig_jll
   5432.8 ms  ✓ OpenEXR
   7662.6 ms  ✓ IntervalArithmetic
   7074.3 ms  ✓ FFTW
   1378.6 ms  ✓ Xorg_libX11_jll
    988.0 ms  ✓ LightXML
   1427.1 ms  ✓ Glib_jll
   4070.7 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
   2808.8 ms  ✓ HypergeometricFunctions
   1778.2 ms  ✓ DiffRules
   1634.8 ms  ✓ ColorVectorSpace → SpecialFunctionsExt
   9202.1 ms  ✓ NearestNeighbors
   4509.8 ms  ✓ Polynomials → PolynomialsMakieCoreExt
   3211.6 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   6257.5 ms  ✓ SimplePolynomials
  23850.5 ms  ✓ FASTX
   4533.9 ms  ✓ ColorBrewer
   2249.5 ms  ✓ WeakRefStrings
  11707.3 ms  ✓ StatsBase
  92905.9 ms  ✓ DataFrames
   6753.8 ms  ✓ Interpolations
  13980.1 ms  ✓ GeometryBasics
   3909.5 ms  ✓ ImageBase
   6318.2 ms  ✓ PNGFiles
  12575.0 ms  ✓ Sixel
  10063.2 ms  ✓ JpegTurbo
  19939.3 ms  ✓ PlotUtils
   1231.3 ms  ✓ FiniteDiff → FiniteDiffSparseArraysExt
   1296.3 ms  ✓ FiniteDiff → FiniteDiffStaticArraysExt
    945.4 ms  ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt
   1415.3 ms  ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt
    935.9 ms  ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt
   1353.8 ms  ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt
   1334.3 ms  ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt
   3375.8 ms  ✓ Polynomials → PolynomialsFFTWExt
   1520.3 ms  ✓ Xorg_libXrender_jll
   1376.6 ms  ✓ Xorg_libXext_jll
   5195.7 ms  ✓ StatsFuns
   9060.4 ms  ✓ ForwardDiff
    899.9 ms  ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt
   5748.9 ms  ✓ LinearAlgebraX
   1978.7 ms  ✓ FASTX → BioSequencesExt
  27955.4 ms  ✓ CSV
   7049.0 ms  ✓ ParallelKMeans
   8358.5 ms  ✓ Clustering
  11698.1 ms  ✓ GridLayoutBase
   2477.5 ms  ✓ Packing
   3302.5 ms  ✓ ShaderAbstractions
   4741.9 ms  ✓ FreeTypeAbstraction
   5795.3 ms  ✓ ImageAxes
   7685.1 ms  ✓ ExactPredicates
   1345.4 ms  ✓ Libglvnd_jll
   1349.3 ms  ✓ Cairo_jll
   3304.5 ms  ✓ StatsFuns → StatsFunsChainRulesCoreExt
   8118.6 ms  ✓ StatsModels
  12651.2 ms  ✓ Distributions
   1569.9 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   3575.9 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   3713.4 ms  ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt
   2618.5 ms  ✓ Interpolations → InterpolationsForwardDiffExt
  25648.7 ms  ✓ MathTeXEngine
   3628.6 ms  ✓ ImageMetadata
   1616.0 ms  ✓ libwebp_jll
   1432.7 ms  ✓ HarfBuzz_jll
   7245.8 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   7702.5 ms  ✓ SimpleRandom
   9122.2 ms  ✓ GLM
   8398.0 ms  ✓ MultivariateStats
   7929.4 ms  ✓ GaussianMixtures
   2030.8 ms  ✓ NLSolversBase
   7342.3 ms  ✓ Netpbm
   8206.3 ms  ✓ WebP
   1511.4 ms  ✓ libass_jll
   1505.2 ms  ✓ Pango_jll
   6512.8 ms  ✓ KernelDensity
  27499.9 ms  ✓ PhyloNetworks
   4762.1 ms  ✓ LineSearches
   4951.8 ms  ✓ ImageIO
   1551.7 ms  ✓ FFMPEG_jll
   5039.9 ms  ✓ Cairo
  11589.6 ms  ✓ Optim
  11155.7 ms  ✓ SimpleGraphs
  12953.2 ms  ✓ DelaunayTriangulation
 200207.6 ms  ✓ Makie
              ✗ CairoMakie
              ✗ PhyloClustering
  318 dependencies successfully precompiled in 1746 seconds. 41 already precompiled.
  3 dependencies had output during precompilation:
┌ Makie
│  ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
│  └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
└  
┌ Formatting
│  ┌ Warning: DEPRECATION NOTICE
│  │ 
│  │ Formatting.jl has been unmaintained for a while, with some serious
│  │ correctness bugs compromising the original purpose of the package. As a result,
│  │ it has been deprecated - consider using an alternative, such as
│  │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│  │ 
│  │ If you are not using Formatting.jl as a direct dependency, please consider
│  │ opening an issue on any packages you are using that do use it as a dependency.
│  │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│  │ package originally brings it in as a dependency.
│  └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
└  
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
│   Downloading artifact: oneTBB
└  

ERROR: LoadError: The following 1 direct dependency failed to precompile:

PhyloClustering 

Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.12/PhyloClustering/jl_R0JUJB".
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:54
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3024
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [27] include_string
    @ ./loading.jl:2880 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [29] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.12/CairoMakie/jl_dRQCtC".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3311
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
    @ Base ./loading.jl:2679
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] #invokelatest_gr#232
    @ ./reflection.jl:1297 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1289 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3882
 [10] maybe_cachefile_lock
    @ ./loading.jl:3879 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2493
 [13] macro expansion
    @ ./loading.jl:2421 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2386
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2362
 [17] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [18] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:5
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3024
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [24] include_string
    @ ./loading.jl:2880 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [26] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 1746.63s



################################################################################
# Testing
#

     Testing PhyloClustering
      Status `/tmp/jl_9lTM4A/Project.toml`
⌅ [13f3f980] CairoMakie v0.11.9
  [aaaa29a8] Clustering v0.15.8
  [861a8166] Combinatorics v1.1.0
  [b4f34e82] Distances v0.10.12
  [59287772] Formatting v0.4.3
  [cc18c42c] GaussianMixtures v0.3.14
  [6f286f6a] MultivariateStats v0.10.3
  [42b8e9d4] ParallelKMeans v1.1.0
  [2e4ec7c6] PhyloClustering v0.2.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [295af30f] Revise v3.13.1
  [860ef19b] StableRNGs v1.0.4
⌅ [2913bbd2] StatsBase v0.33.21
  [fd094767] Suppressor v0.2.8
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_9lTM4A/Manifest.toml`
  [47edcb42] ADTypes v1.21.0
  [621f4979] AbstractFFTs v1.5.0
  [398f06c4] AbstractLattices v0.3.1
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.4.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.2
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.22.0
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.8
  [18cc8868] BaseDirs v1.3.2
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.1
  [3c28c6f8] BioSymbols v5.2.0
  [fa961155] CEnum v0.5.0
  [96374032] CRlibm v1.0.2
  [336ed68f] CSV v0.10.15
  [159f3aea] Cairo v1.1.1
⌅ [13f3f980] CairoMakie v0.11.9
  [d360d2e6] ChainRulesCore v1.26.0
  [aaaa29a8] Clustering v0.15.8
  [da1fd8a2] CodeTracking v3.0.0
  [944b1d66] CodecZlib v0.7.8
  [a2cac450] ColorBrewer v0.4.2
  [35d6a980] ColorSchemes v3.31.0
⌅ [3da002f7] ColorTypes v0.11.5
⌃ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.1.0
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [807dbc54] Compiler v0.1.1
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
⌅ [927a84f5] DelaunayTriangulation v0.8.12
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.13
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.123
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
  [429591f6] ExactPredicates v2.2.9
  [411431e0] Extents v0.1.6
  [c2308a5c] FASTX v2.1.7
  [7a1cc6ca] FFTW v1.10.0
  [5789e2e9] FileIO v1.17.1
⌅ [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.15.0
  [6a86dc24] FiniteDiff v2.29.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [59287772] Formatting v0.4.3
  [f6369f11] ForwardDiff v1.3.1
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.8
⌅ [d9f16b24] Functors v0.4.12
  [38e38edf] GLM v1.9.2
  [cc18c42c] GaussianMixtures v0.3.14
  [68eda718] GeoFormatTypes v0.4.5
⌃ [cf35fbd7] GeoInterface v1.4.1
⌅ [5c1252a2] GeometryBasics v0.4.11
  [a2bd30eb] Graphics v1.1.3
⌅ [3955a311] GridLayoutBase v0.10.2
  [42e2da0e] Grisu v1.0.2
  [34004b35] HypergeometricFunctions v0.3.28
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.5
  [18e54dd8] IntegerMathUtils v0.1.3
  [a98d9a8b] Interpolations v0.16.2
  [d1acc4aa] IntervalArithmetic v1.0.2
  [8197267c] IntervalSets v0.7.13
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.3.0
  [b835a17e] JpegTurbo v0.1.6
  [aa1ae85d] JuliaInterpreter v0.10.9
  [5ab0869b] KernelDensity v0.6.10
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [9c8b4983] LightXML v0.9.3
⌃ [d3d80556] LineSearches v7.5.1
  [9b3f67b0] LinearAlgebraX v0.2.10
  [2ab3a3ac] LogExpFunctions v0.3.29
  [6f1432cf] LoweredCodeUtils v3.5.0
  [e80e1ace] MLJModelInterface v1.12.1
  [1914dd2f] MacroTools v0.5.16
⌅ [ee78f7c6] Makie v0.20.8
⌅ [20f20a25] MakieCore v0.7.3
  [dbb5928d] MappedArrays v0.4.3
⌅ [0a4f8689] MathTeXEngine v0.5.7
  [e1d29d7a] Missings v1.2.0
  [7475f97c] Mods v2.2.6
  [e94cdb99] MosaicViews v0.3.4
  [3b2b4ff1] Multisets v0.4.5
  [6f286f6a] MultivariateStats v0.10.3
⌅ [d41bc354] NLSolversBase v7.10.0
  [76087f3c] NLopt v1.2.1
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.26
  [f09324ee] Netpbm v1.1.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [52e1d378] OpenEXR v0.3.3
  [429524aa] Optim v1.13.3
  [bac558e1] OrderedCollections v1.8.1
⌃ [90014a1f] PDMats v0.11.35
  [f57f5aa1] PNGFiles v0.4.4
  [19eb6ba3] Packing v0.5.1
  [5432bcbf] PaddedViews v0.5.12
  [42b8e9d4] ParallelKMeans v1.1.0
  [69de0a69] Parsers v2.8.3
  [2ae35dd2] Permutations v0.4.23
  [2e4ec7c6] PhyloClustering v0.2.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [3bbf5609] PikaParser v0.6.1
  [eebad327] PkgVersion v0.3.3
  [995b91a9] PlotUtils v1.4.4
  [647866c9] PolygonOps v0.1.2
⌃ [f27b6e38] Polynomials v4.0.21
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [08abe8d2] PrettyTables v3.1.2
  [27ebfcd6] Primes v0.5.7
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [4b34888f] QOI v1.0.2
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [295af30f] Revise v3.13.1
  [286e9d63] RingLists v0.2.9
  [79098fc4] Rmath v0.9.0
  [5eaf0fd0] RoundingEmulator v0.2.1
  [fdea26ae] SIMD v3.7.2
  [30f210dd] ScientificTypesBase v3.0.0
  [6e75b9c4] ScikitLearnBase v0.5.0
  [6c6a2e73] Scratch v1.3.0
  [91c51154] SentinelArrays v1.4.9
  [efcf1570] Setfield v1.1.2
⌅ [65257c39] ShaderAbstractions v0.4.1
  [1277b4bf] ShiftedArrays v2.0.0
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.1
  [55797a34] SimpleGraphs v0.8.7
  [ec83eff0] SimplePartitions v0.3.3
  [cc47b68c] SimplePolynomials v0.2.18
  [a6525b86] SimpleRandom v0.3.2
  [699a6c99] SimpleTraits v0.9.5
  [45858cf5] Sixel v0.1.5
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
⌅ [c5dd0088] StableHashTraits v1.3.4
  [860ef19b] StableRNGs v1.0.4
  [cae243ae] StackViews v0.1.2
  [90137ffa] StaticArrays v1.9.16
  [1e83bf80] StaticArraysCore v1.4.4
  [64bff920] StatisticalTraits v3.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.2
  [3eaba693] StatsModels v0.7.7
  [892a3eda] StringManipulation v0.4.2
  [354b36f9] StringViews v1.3.6
⌅ [09ab397b] StructArrays v0.6.21
  [856f2bd8] StructTypes v1.11.0
  [ec057cc2] StructUtils v2.6.1
  [fd094767] Suppressor v0.2.8
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [62fd8b95] TensorCore v0.1.1
  [731e570b] TiffImages v0.11.6
  [3bb67fe8] TranscodingStreams v0.11.3
  [981d1d27] TriplotBase v0.1.0
  [9d95972d] TupleTools v1.6.0
  [7200193e] Twiddle v1.1.2
  [1cfade01] UnicodeFun v0.4.1
  [c4a57d5a] UnsafeArrays v1.0.8
  [ecbed89c] WeakKeyIdDicts v0.1.0
  [ea10d353] WeakRefStrings v1.4.2
  [e3aaa7dc] WebP v0.1.3
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
⌅ [68821587] Arpack_jll v3.5.2+0
  [6e34b625] Bzip2_jll v1.0.9+0
  [4e9b3aee] CRlibm_jll v1.0.1+0
  [83423d85] Cairo_jll v1.18.5+0
  [5ae413db] EarCut_jll v2.2.4+0
  [2e619515] Expat_jll v2.7.3+0
  [b22a6f82] FFMPEG_jll v8.0.1+0
  [f5851436] FFTW_jll v3.3.11+0
  [a3f928ae] Fontconfig_jll v2.17.1+0
  [d7e528f0] FreeType2_jll v2.13.4+0
  [559328eb] FriBidi_jll v1.0.17+0
  [b0724c58] GettextRuntime_jll v0.22.4+0
  [59f7168a] Giflib_jll v5.2.3+0
  [7746bdde] Glib_jll v2.86.2+0
  [3b182d85] Graphite2_jll v1.3.15+0
  [2e76f6c2] HarfBuzz_jll v8.5.1+0
  [905a6f67] Imath_jll v3.2.2+0
  [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
  [aacddb02] JpegTurbo_jll v3.1.4+0
  [c1c5ebd0] LAME_jll v3.100.3+0
  [88015f11] LERC_jll v4.0.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] LZO_jll v2.10.3+0
⌅ [e9f186c6] Libffi_jll v3.4.7+0
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.2+0
  [89763e89] Libtiff_jll v4.7.2+0
  [38a345b3] Libuuid_jll v2.41.2+0
  [856f044c] MKL_jll v2025.2.0+0
  [079eb43e] NLopt_jll v2.10.0+0
  [e7412a2a] Ogg_jll v1.3.6+0
  [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] OpenEXR_jll v3.4.4+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [91d4177d] Opus_jll v1.6.0+0
  [36c8627f] Pango_jll v1.57.0+0
⌅ [30392449] Pixman_jll v0.44.2+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [02c8fc9c] XML2_jll v2.15.1+0
  [ffd25f8a] XZ_jll v5.8.2+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [9a68df92] isoband_jll v0.2.3+0
  [a4ae2306] libaom_jll v3.13.1+0
  [0ac62f75] libass_jll v0.17.4+0
  [f638f0a6] libfdk_aac_jll v2.0.4+0
  [b53b4c65] libpng_jll v1.6.53+0
  [075b6546] libsixel_jll v1.10.5+0
  [f27f6e37] libvorbis_jll v1.3.8+0
  [c5f90fcd] libwebp_jll v1.6.0+0
  [1317d2d5] oneTBB_jll v2022.0.0+1
⌅ [1270edf5] x264_jll v10164.0.1+0
  [dfaa095f] x265_jll v4.1.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [8bf52ea8] CRC32c v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.1
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+0
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.44.0+1
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling packages...
              ✗ CairoMakie
Info Given PhyloClustering was explicitly requested, output will be shown live 
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:54
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3024
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [27] include_string
    @ ./loading.jl:2880 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [29] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.12/CairoMakie/jl_sUcEu1".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3311
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
    @ Base ./loading.jl:2679
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] #invokelatest_gr#232
    @ ./reflection.jl:1297 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1289 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3882
 [10] maybe_cachefile_lock
    @ ./loading.jl:3879 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2493
 [13] macro expansion
    @ ./loading.jl:2421 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2386
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2362
 [17] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [18] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:5
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3024
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [24] include_string
    @ ./loading.jl:2880 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [26] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:5
              ✗ PhyloClustering
  0 dependencies successfully precompiled in 201 seconds. 359 already precompiled.

ERROR: LoadError: The following 2 direct dependencies failed to precompile:

PhyloClustering 

Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.12/PhyloClustering/jl_LuxL10".
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:54
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3024
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [27] include_string
    @ ./loading.jl:2880 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [29] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.12/CairoMakie/jl_sUcEu1".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3311
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
    @ Base ./loading.jl:2679
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
  [7] #invokelatest_gr#232
    @ ./reflection.jl:1297 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1289 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3882
 [10] maybe_cachefile_lock
    @ ./loading.jl:3879 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2493
 [13] macro expansion
    @ ./loading.jl:2421 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2386
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2362
 [17] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [18] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:5
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3024
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [24] include_string
    @ ./loading.jl:2880 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [26] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:5
CairoMakie 

Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.12/CairoMakie/jl_FcVRR7".
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:54
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3024
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [27] include_string
    @ ./loading.jl:2880 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [29] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1

Testing failed after 212.35s

ERROR: LoadError: Package PhyloClustering errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:317
 [12] _start()
    @ Base ./client.jl:550
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 2048.17s: package fails to precompile