Package evaluation to test MetacommunityDynamics on Julia 1.13.0-alpha2.30 (5abf758bb1*) started at 2026-01-09T23:10:03.548 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.24s ################################################################################ # Installation # Installing MetacommunityDynamics... Resolving package versions... Installed libaom_jll ────────────────────────── v3.13.1+0 Installed ImageIO ───────────────────────────── v0.6.9 Installed MosaicViews ───────────────────────── v0.3.4 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed Libuuid_jll ───────────────────────── v2.41.2+0 Installed libass_jll ────────────────────────── v0.17.4+0 Installed AlmostBlockDiagonals ──────────────── v0.1.10 Installed PolygonOps ────────────────────────── v0.1.2 Installed Bzip2_jll ─────────────────────────── v1.0.9+0 Installed Libtiff_jll ───────────────────────── v4.7.2+0 Installed HarfBuzz_jll ──────────────────────── v8.5.1+0 Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed FastPower ─────────────────────────── v1.3.0 Installed Extents ───────────────────────────── v0.1.6 Installed Cairo_jll ─────────────────────────── v1.18.5+0 Installed OrderedCollections ────────────────── v1.8.1 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed Sundials ──────────────────────────── v4.28.0 Installed PreallocationTools ────────────────── v0.4.34 Installed NearestNeighbors ──────────────────── v0.4.26 Installed OrdinaryDiffEqRosenbrock ──────────── v1.20.0 Installed Optim ─────────────────────────────── v1.13.3 Installed Graphite2_jll ─────────────────────── v1.3.15+0 Installed BoundaryValueDiffEqShooting ───────── v1.9.0 Installed EnzymeCore ────────────────────────── v0.8.18 Installed NonlinearSolveSpectralMethods ─────── v1.5.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed Fontconfig_jll ────────────────────── v2.17.1+0 Installed BoundaryValueDiffEqFIRK ───────────── v1.9.0 Installed OrdinaryDiffEqExponentialRK ───────── v1.11.0 Installed OrdinaryDiffEqFIRK ────────────────── v1.18.0 Installed FileIO ────────────────────────────── v1.17.1 Installed Giflib_jll ────────────────────────── v5.2.3+0 Installed Distances ─────────────────────────── v0.10.12 Installed NaNMath ───────────────────────────── v1.1.3 Installed StaticArrayInterface ──────────────── v1.8.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed AbstractLattices ──────────────────── v0.3.1 Installed DiffEqCallbacks ───────────────────── v4.11.0 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed Graphics ──────────────────────────── v1.1.3 Installed FastBroadcast ─────────────────────── v0.3.5 Installed NonlinearSolveBase ────────────────── v2.0.0 Installed Opus_jll ──────────────────────────── v1.6.0+0 Installed BoundaryValueDiffEqMIRKN ──────────── v1.8.0 Installed OrdinaryDiffEqQPRK ────────────────── v1.7.0 Installed SimplePolynomials ─────────────────── v0.2.18 Installed LinearSolve ───────────────────────── v3.28.0 Installed JumpProcesses ─────────────────────── v9.19.3 Installed WoodburyMatrices ──────────────────── v1.0.0 Installed Ogg_jll ───────────────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ───────────────────── v1.17.1+0 Installed Tables ────────────────────────────── v1.12.1 Installed EnumX ─────────────────────────────── v1.0.5 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.9.0 Installed NLSolversBase ─────────────────────── v7.10.0 Installed DiffEqBase ────────────────────────── v6.194.0 Installed BracketingNonlinearSolve ──────────── v1.5.0 Installed LZO_jll ───────────────────────────── v2.10.3+0 Installed NeutralLandscapes ─────────────────── v0.1.5 Installed Reexport ──────────────────────────── v1.2.2 Installed InverseFunctions ──────────────────── v0.1.17 Installed Jieko ─────────────────────────────── v0.2.1 Installed BandedMatrices ────────────────────── v1.11.0 Installed NonlinearSolve ────────────────────── v4.12.0 Installed LERC_jll ──────────────────────────── v4.0.1+0 Installed Missings ──────────────────────────── v1.2.0 Installed TableTraits ───────────────────────── v1.0.1 Installed Static ────────────────────────────── v1.3.1 Installed Preferences ───────────────────────── v1.5.1 Installed Polynomials ───────────────────────── v4.0.21 Installed MaybeInplace ──────────────────────── v0.1.4 Installed LLVMOpenMP_jll ────────────────────── v18.1.8+0 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed MappedArrays ──────────────────────── v0.4.3 Installed Grisu ─────────────────────────────── v1.0.2 Installed Crayons ───────────────────────────── v4.1.1 Installed LevyArea ──────────────────────────── v1.0.0 Installed Imath_jll ─────────────────────────── v3.2.2+0 Installed OrdinaryDiffEqNordsieck ───────────── v1.7.0 Installed RecursiveArrayTools ───────────────── v3.36.0 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.8.0 Installed RangeArrays ───────────────────────── v0.3.2 Installed Format ────────────────────────────── v1.3.7 Installed UnPack ────────────────────────────── v1.0.2 Installed CRlibm ────────────────────────────── v1.0.2 Installed ADTypes ───────────────────────────── v1.21.0 Installed OrdinaryDiffEqLinear ──────────────── v1.9.0 Installed Inflate ───────────────────────────── v0.1.5 Installed MacroTools ────────────────────────── v0.5.16 Installed ColorBrewer ───────────────────────── v0.4.2 Installed DiffResults ───────────────────────── v1.1.0 Installed ManualMemory ──────────────────────── v0.1.8 Installed DataStructures ────────────────────── v0.18.22 Installed GenericSchur ──────────────────────── v0.5.6 Installed FillArrays ────────────────────────── v1.15.0 Installed MathTeXEngine ─────────────────────── v0.5.7 Installed OpenEXR_jll ───────────────────────── v3.4.4+0 Installed AbstractTrees ─────────────────────── v0.4.5 Installed Packing ───────────────────────────── v0.5.1 Installed MakieCore ─────────────────────────── v0.7.3 Installed LazyModules ───────────────────────── v0.3.1 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed ArnoldiMethod ─────────────────────── v0.4.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed Cairo ─────────────────────────────── v1.1.1 Installed x264_jll ──────────────────────────── v10164.0.1+0 Installed Xorg_libXau_jll ───────────────────── v1.0.13+0 Installed UnicodeFun ────────────────────────── v0.4.1 Installed ExprTools ─────────────────────────── v0.1.10 Installed Observables ───────────────────────── v0.5.5 Installed StatsBase ─────────────────────────── v0.34.9 Installed CairoMakie ────────────────────────── v0.11.9 Installed SciMLJacobianOperators ────────────── v0.1.12 Installed DataValueInterfaces ───────────────── v1.0.0 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed ArrayInterface ────────────────────── v7.22.0 Installed CEnum ─────────────────────────────── v0.5.0 Installed RandomNumbers ─────────────────────── v1.6.0 Installed BoundaryValueDiffEq ───────────────── v5.18.0 Installed Libffi_jll ────────────────────────── v3.4.7+0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed LoggingExtras ─────────────────────── v1.2.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed ConcreteStructs ───────────────────── v0.2.3 Installed Pixman_jll ────────────────────────── v0.44.2+0 Installed StructUtils ───────────────────────── v2.6.1 Installed SparseConnectivityTracer ──────────── v1.1.3 Installed Expat_jll ─────────────────────────── v2.7.3+0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed IrrationalConstants ───────────────── v0.2.6 Installed libpng_jll ────────────────────────── v1.6.53+0 Installed IntegerMathUtils ──────────────────── v0.1.3 Installed Contour ───────────────────────────── v0.6.3 Installed isoband_jll ───────────────────────── v0.2.3+0 Installed ColorVectorSpace ──────────────────── v0.10.0 Installed ArrayLayouts ──────────────────────── v1.12.2 Installed SimpleTraits ──────────────────────── v0.9.5 Installed RoundingEmulator ──────────────────── v0.2.1 Installed ImageMetadata ─────────────────────── v0.9.10 Installed Interpolations ────────────────────── v0.16.2 Installed libfdk_aac_jll ────────────────────── v2.0.4+0 Installed StableRNGs ────────────────────────── v1.0.4 Installed libsixel_jll ──────────────────────── v1.10.5+0 Installed PikaParser ────────────────────────── v0.6.1 Installed OrdinaryDiffEqRKN ─────────────────── v1.8.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.9.0 Installed OrdinaryDiffEqExtrapolation ───────── v1.11.0 Installed Scratch ───────────────────────────── v1.3.0 Installed libwebp_jll ───────────────────────── v1.6.0+0 Installed FFMPEG_jll ────────────────────────── v8.0.1+0 Installed Setfield ──────────────────────────── v1.1.2 Installed ShaderAbstractions ────────────────── v0.4.1 Installed CRlibm_jll ────────────────────────── v1.0.1+0 Installed MyterialColors ────────────────────── v0.3.0 Installed OrdinaryDiffEq ────────────────────── v6.105.0 Installed OrdinaryDiffEqPRK ─────────────────── v1.7.0 Installed Moshi ─────────────────────────────── v0.3.7 Installed PDMats ────────────────────────────── v0.11.37 Installed WeakKeyIdDicts ────────────────────── v0.1.0 Installed ImageCore ─────────────────────────── v0.10.5 Installed SteadyStateDiffEq ─────────────────── v2.7.0 Installed ColorSchemes ──────────────────────── v3.31.0 Installed NonlinearSolveQuasiNewton ─────────── v1.10.0 Installed AxisArrays ────────────────────────── v0.4.8 Installed PNGFiles ──────────────────────────── v0.4.4 Installed DocStringExtensions ───────────────── v0.9.5 Installed ResettableStacks ──────────────────── v1.2.0 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.8.0 Installed JpegTurbo ─────────────────────────── v0.1.6 Installed StableHashTraits ──────────────────── v1.3.4 Installed CompositionsBase ──────────────────── v0.1.2 Installed ForwardDiff ───────────────────────── v1.3.1 Installed CommonSolve ───────────────────────── v0.2.6 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed OpenBLASConsistentFPCSR_jll ───────── v0.3.29+0 Installed DifferentiationInterface ──────────── v0.7.13 Installed FreeType ──────────────────────────── v4.1.1 Installed Multisets ─────────────────────────── v0.4.5 Installed PkgVersion ────────────────────────── v0.3.3 Installed LightXML ──────────────────────────── v0.9.3 Installed RelocatableFolders ────────────────── v1.0.1 Installed StackViews ────────────────────────── v0.1.2 Installed Sundials_jll ──────────────────────── v5.2.3+0 Installed KernelDensity ─────────────────────── v0.6.10 Installed BoundaryValueDiffEqMIRK ───────────── v1.9.0 Installed AliasTables ───────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed LineSearch ────────────────────────── v0.1.5 Installed OrdinaryDiffEqStabilizedRK ────────── v1.7.0 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed SIMD ──────────────────────────────── v3.7.2 Installed Krylov ────────────────────────────── v0.10.3 Installed Combinatorics ─────────────────────── v1.1.0 Installed RecipesBase ───────────────────────── v1.3.4 Installed DataAPI ───────────────────────────── v1.16.0 Installed SciMLOperators ────────────────────── v1.14.1 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed Netpbm ────────────────────────────── v1.1.1 Installed SciMLStructures ───────────────────── v1.9.0 Installed ImageAxes ─────────────────────────── v0.6.12 Installed OrdinaryDiffEqSymplecticRK ────────── v1.10.0 Installed OrdinaryDiffEqBDF ─────────────────── v1.13.0 Installed StaticArrays ──────────────────────── v1.9.16 Installed Colors ────────────────────────────── v0.12.11 Installed StaticArraysCore ──────────────────── v1.4.4 Installed CodeTracking ──────────────────────── v3.0.0 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed Mods ──────────────────────────────── v2.2.6 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed OrdinaryDiffEqLowStorageRK ────────── v1.10.0 Installed Libglvnd_jll ──────────────────────── v1.7.1+1 Installed AxisAlgorithms ────────────────────── v1.1.0 Installed QOI ───────────────────────────────── v1.0.2 Installed ColorTypes ────────────────────────── v0.11.5 Installed SciMLPublic ───────────────────────── v1.0.1 Installed Term ──────────────────────────────── v2.0.8 Installed Requires ──────────────────────────── v1.3.1 Installed Glib_jll ──────────────────────────── v2.86.2+0 Installed SimplePartitions ──────────────────── v0.3.3 Installed BaseDirs ──────────────────────────── v1.3.2 Installed OrdinaryDiffEqDifferentiation ─────── v1.19.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DifferentialEquations ─────────────── v7.17.0 Installed FunctionWrappers ──────────────────── v1.1.3 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.17.0 Installed DiffRules ─────────────────────────── v1.15.1 Installed FreeTypeAbstraction ───────────────── v0.10.8 Installed MetacommunityDynamics ─────────────── v0.2.0 Installed Distributions ─────────────────────── v0.25.123 Installed OrdinaryDiffEqCore ────────────────── v2.3.0 Installed SciMLBase ─────────────────────────── v2.132.0 Installed JSON ──────────────────────────────── v1.3.0 Installed Parsers ───────────────────────────── v2.8.3 Installed NonlinearSolveFirstOrder ──────────── v1.9.0 Installed Rmath ─────────────────────────────── v0.9.0 Installed FiniteDiff ────────────────────────── v2.29.0 Installed FastClosures ──────────────────────── v0.3.2 Installed GeoFormatTypes ────────────────────── v0.4.5 Installed OrdinaryDiffEqExplicitRK ──────────── v1.7.0 Installed FilePaths ─────────────────────────── v0.8.3 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed StatsFuns ─────────────────────────── v1.5.2 Installed Polyester ─────────────────────────── v0.7.18 Installed Xorg_libXdmcp_jll ─────────────────── v1.1.6+0 Installed BoundaryValueDiffEqAscher ─────────── v1.8.0 Installed OpenEXR ───────────────────────────── v0.3.3 Installed BoundaryValueDiffEqCore ───────────── v1.11.1 Installed GridLayoutBase ────────────────────── v0.10.2 Installed SignedDistanceFields ──────────────── v0.4.1 Installed JLLWrappers ───────────────────────── v1.7.1 Installed OrdinaryDiffEqFeagin ──────────────── v1.7.0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.10.0 Installed TestItems ─────────────────────────── v0.1.1 Installed XZ_jll ────────────────────────────── v5.8.2+0 Installed Primes ────────────────────────────── v0.5.7 Installed x265_jll ──────────────────────────── v4.1.0+0 Installed GeometryBasics ────────────────────── v0.4.11 Installed ExactPredicates ───────────────────── v2.2.9 Installed Pango_jll ─────────────────────────── v1.57.0+0 Installed StructTypes ───────────────────────── v1.11.0 Installed IterTools ─────────────────────────── v1.10.0 Installed Graphs ────────────────────────────── v1.13.1 Installed ThreadingUtilities ────────────────── v0.5.5 Installed TiffImages ────────────────────────── v0.11.6 Installed OrdinaryDiffEqSSPRK ───────────────── v1.10.0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.9.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.10.0 Installed Accessors ─────────────────────────── v0.1.43 Installed Xorg_xtrans_jll ───────────────────── v1.6.0+0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed DelaunayTriangulation ─────────────── v0.8.12 Installed Makie ─────────────────────────────── v0.20.8 Installed JpegTurbo_jll ─────────────────────── v3.1.4+0 Installed PaddedViews ───────────────────────── v0.5.12 Installed ExponentialUtilities ──────────────── v1.29.0 Installed Adapt ─────────────────────────────── v4.4.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed OrdinaryDiffEqDefault ─────────────── v1.10.0 Installed HaltonSequences ───────────────────── v0.2.0 Installed ConstructionBase ──────────────────── v1.6.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed OrdinaryDiffEqVerner ──────────────── v1.9.0 Installed Libmount_jll ──────────────────────── v2.41.2+0 Installed TriplotBase ───────────────────────── v0.1.0 Installed MarchingCubes ─────────────────────── v0.1.11 Installed StochasticDiffEq ──────────────────── v6.87.0 Installed LinearAlgebraX ────────────────────── v0.2.10 Installed Random123 ─────────────────────────── v1.7.1 Installed Sixel ─────────────────────────────── v0.1.5 Installed FastAlmostBandedMatrices ──────────── v0.1.5 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed TranscodingStreams ────────────────── v0.11.3 Installed PoissonRandom ─────────────────────── v0.4.7 Installed RingLists ─────────────────────────── v0.2.9 Installed Compat ────────────────────────────── v4.18.1 Installed EarCut_jll ────────────────────────── v2.2.4+0 Installed Xorg_libX11_jll ───────────────────── v1.8.12+0 Installed PlotUtils ─────────────────────────── v1.4.4 Installed StrideArraysCore ──────────────────── v0.5.8 Installed TensorCore ────────────────────────── v0.1.1 Installed ProgressLogging ───────────────────── v0.1.6 Installed PositiveFactorizations ────────────── v0.2.4 Installed Statistics ────────────────────────── v1.11.1 Installed StatsAPI ──────────────────────────── v1.8.0 Installed ImageBase ─────────────────────────── v0.1.7 Installed LazyArrays ────────────────────────── v2.9.4 Installed ExproniconLite ────────────────────── v0.10.14 Installed PrecompileTools ───────────────────── v1.3.3 Installed UnicodePlots ──────────────────────── v3.8.1 Installed StructArrays ──────────────────────── v0.6.21 Installed WebP ──────────────────────────────── v0.1.3 Installed TimerOutputs ──────────────────────── v0.5.29 Installed OffsetArrays ──────────────────────── v1.17.0 Installed ProgressMeter ─────────────────────── v1.11.0 Installed TupleTools ────────────────────────── v1.6.0 Installed GettextRuntime_jll ────────────────── v0.22.4+0 Installed Ratios ────────────────────────────── v0.4.5 Installed FriBidi_jll ───────────────────────── v1.0.17+0 Installed ChainRulesCore ────────────────────── v1.26.0 Installed CPUSummary ────────────────────────── v0.2.7 Installed LAME_jll ──────────────────────────── v3.100.3+0 Installed MatrixFactorizations ──────────────── v3.1.3 Installed Xorg_libXrender_jll ───────────────── v0.9.12+0 Installed Highlights ────────────────────────── v0.5.3 Installed Isoband ───────────────────────────── v0.1.1 Installed Animations ────────────────────────── v0.4.2 Installed DelayDiffEq ───────────────────────── v5.64.0 Installed IntervalArithmetic ────────────────── v1.0.2 Installed Parameters ────────────────────────── v0.12.3 Installed libvorbis_jll ─────────────────────── v1.3.8+0 Installed IfElse ────────────────────────────── v0.1.1 Installed MuladdMacro ───────────────────────── v0.2.4 Installed XML2_jll ──────────────────────────── v2.15.1+0 Installed SciMLLogging ──────────────────────── v1.8.0 Installed PtrArrays ─────────────────────────── v1.3.0 Installed DiffEqNoiseProcess ────────────────── v5.24.1 Installed SpecialFunctions ──────────────────── v2.6.1 Installed SimpleNonlinearSolve ──────────────── v2.9.0 Installed Showoff ───────────────────────────── v1.0.3 Installed FixedPointNumbers ─────────────────── v0.8.5 Installed IntervalSets ──────────────────────── v0.7.13 Installed FreeType2_jll ─────────────────────── v2.13.4+0 Installed FFTW ──────────────────────────────── v1.10.0 Installed Permutations ──────────────────────── v0.4.23 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed Xorg_libXext_jll ──────────────────── v1.3.7+0 Installed IndirectArrays ────────────────────── v1.0.0 Installed LineSearches ──────────────────────── v7.5.1 Installed Automa ────────────────────────────── v1.1.0 Installed GeoInterface ──────────────────────── v1.4.1 Installed SimpleRandom ──────────────────────── v0.3.2 Installed OrdinaryDiffEqTsit5 ───────────────── v1.8.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed SimpleGraphs ──────────────────────── v0.8.7 Installed OrdinaryDiffEqFunctionMap ─────────── v1.8.0 Installing 55 artifacts Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Expat 283.3 KiB Installed artifact Ogg 250.3 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact XML2 2.2 MiB Installed artifact Cairo 2.2 MiB Installed artifact libass 427.8 KiB Installed artifact Bzip2 503.5 KiB Installed artifact OpenEXR 1.4 MiB Installed artifact libpng 329.0 KiB Installed artifact libwebp 2.6 MiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact FriBidi 78.9 KiB Installed artifact libaom 6.4 MiB Installed artifact x265 1.4 MiB Installed artifact Libtiff 2.3 MiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact FFMPEG 11.7 MiB Installed artifact libvorbis 271.0 KiB Installed artifact FFTW 2.2 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact LZO 208.9 KiB Installed artifact EarCut 80.5 KiB Installed artifact libsixel 177.3 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Opus 960.8 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact x264 2.1 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Pixman 372.2 KiB Installed artifact Giflib 154.6 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Glib 7.7 MiB Installed artifact Imath 184.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libffi 44.2 KiB Installed artifact isoband 25.7 KiB Installed artifact Libuuid 3.7 MiB Installed artifact LAME 292.5 KiB Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Pango 2.0 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact Sundials 2.1 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [fe88e339] + MetacommunityDynamics v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [aae01518] + BandedMatrices v1.11.0 [18cc8868] + BaseDirs v1.3.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 32.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4606.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 1148.35s ################################################################################ # Testing # Testing MetacommunityDynamics Status `/tmp/jl_aUzH0M/Project.toml` [fe88e339] MetacommunityDynamics v0.2.0 [71847384] NeutralLandscapes v0.1.5 [f8b46487] TestItemRunner v1.1.4 ⌅ [1c621080] TestItems v0.1.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_aUzH0M/Manifest.toml` [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [aae01518] BandedMatrices v1.11.0 [18cc8868] BaseDirs v1.3.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] 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versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Rosenzweig-MacArthur constructor works: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/models/rosenzweigmacarthur.jl:143 Got exception outside of a @test LoadError: UndefVarError: `MKL_jll` not defined in `LinearSolve` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/LinearSolve/n9KK1/src/mkl.jl:11 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/LinearSolve/n9KK1/src/LinearSolve.jl:160 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [7] macro expansion @ ./loading.jl:2498 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [10] require @ ./loading.jl:2438 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [14] top-level scope @ ~/.julia/packages/NonlinearSolveFirstOrder/gwWsK/src/NonlinearSolveFirstOrder.jl:15 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [18] macro expansion @ ./loading.jl:2498 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [21] require @ ./loading.jl:2438 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [24] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [25] top-level scope @ ~/.julia/packages/NonlinearSolve/JTN4J/src/NonlinearSolve.jl:23 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [28] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [29] macro expansion @ ./loading.jl:2498 [inlined] [30] macro expansion @ ./lock.jl:376 [inlined] [31] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [32] require @ ./loading.jl:2438 [inlined] [33] eval_import_path @ ./module.jl:36 [inlined] [34] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [35] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [36] top-level scope @ ~/.julia/packages/OrdinaryDiffEqNonlinearSolve/6bcE0/src/OrdinaryDiffEqNonlinearSolve.jl:14 [37] include(mod::Module, _path::String) @ Base ./Base.jl:309 [38] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [39] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [40] macro expansion @ ./loading.jl:2498 [inlined] [41] macro expansion @ ./lock.jl:376 [inlined] [42] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [43] require @ ./loading.jl:2438 [inlined] [44] eval_import_path @ ./module.jl:36 [inlined] [45] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [46] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [47] top-level scope @ ~/.julia/packages/StochasticDiffEq/BE7rv/src/StochasticDiffEq.jl:63 [48] include(mod::Module, _path::String) @ Base ./Base.jl:309 [49] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [50] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [51] macro expansion @ ./loading.jl:2498 [inlined] [52] macro expansion @ ./lock.jl:376 [inlined] [53] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [54] require @ ./loading.jl:2438 [inlined] [55] eval_import_path @ ./module.jl:36 [inlined] [56] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [57] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [58] top-level scope @ ~/.julia/packages/DifferentialEquations/rpSZ8/src/DifferentialEquations.jl:10 [59] include(mod::Module, _path::String) @ Base ./Base.jl:309 [60] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [61] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [62] macro expansion @ ./loading.jl:2498 [inlined] [63] macro expansion @ ./lock.jl:376 [inlined] [64] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [65] require @ ./loading.jl:2438 [inlined] [66] eval_import_path @ ./module.jl:36 [inlined] [67] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [68] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [69] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/MetacommunityDynamics.jl:7 [70] include(mod::Module, _path::String) @ Base ./Base.jl:309 [71] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [72] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [73] macro expansion @ ./loading.jl:2498 [inlined] [74] macro expansion @ ./lock.jl:376 [inlined] [75] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [76] require @ ./loading.jl:2438 [inlined] [77] eval_import_path @ ./module.jl:36 [inlined] [78] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [79] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [80] top-level scope @ none:1 [81] eval(m::Module, e::Any) @ Core ./boot.jl:489 [82] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:95 [83] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [84] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [85] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [86] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [87] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [88] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [89] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [90] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [91] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [92] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [93] top-level scope @ none:6 [94] eval(m::Module, e::Any) @ Core ./boot.jl:489 [95] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [96] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/n9KK1/src/mkl.jl:11 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/n9KK1/src/LinearSolve.jl:1 in expression starting at /home/pkgeval/.julia/packages/NonlinearSolveFirstOrder/gwWsK/src/NonlinearSolveFirstOrder.jl:1 in expression starting at /home/pkgeval/.julia/packages/NonlinearSolve/JTN4J/src/NonlinearSolve.jl:1 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEqNonlinearSolve/6bcE0/src/OrdinaryDiffEqNonlinearSolve.jl:1 in expression starting at /home/pkgeval/.julia/packages/StochasticDiffEq/BE7rv/src/StochasticDiffEq.jl:1 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/rpSZ8/src/DifferentialEquations.jl:1 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/MetacommunityDynamics.jl:1 We can create a dispersal kernel: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/dispersal/kernel.jl:53 Got exception outside of a @test LoadError: UndefVarError: `DispersalKernel` not defined in `Main.var"##143"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/dispersal/kernel.jl:53 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/dispersal/kernel.jl:53 We can create a dispersal with custom maximum dispersal distance: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/dispersal/kernel.jl:58 Got exception outside of a @test LoadError: UndefVarError: `DispersalKernel` not defined in `Main.var"##144"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/dispersal/kernel.jl:58 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/dispersal/kernel.jl:58 Beverton-Holt constructor works: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/models/bevertonholt.jl:92 Test threw exception Expression: typeof(BevertonHolt()) <: Model UndefVarError: `BevertonHolt` not defined in `Main.var"##145"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/models/bevertonholt.jl:539 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:750 [inlined] Beverton-Holt constructor works: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/models/bevertonholt.jl:93 Test threw exception Expression: typeof(BevertonHolt()) <: BevertonHolt UndefVarError: `BevertonHolt` not defined in `Main.var"##145"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/models/bevertonholt.jl:539 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:750 [inlined] We can create an environment layer: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:57 Got exception outside of a @test LoadError: UndefVarError: `EnvironmentLayer` not defined in `Main.var"##146"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:57 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:57 We can create an environment layer with different generators: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:62 Got exception outside of a @test LoadError: UndefVarError: `EnvironmentLayer` not defined in `Main.var"##147"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:63 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:63 We can measure the size of an environmental layer: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:71 Got exception outside of a @test LoadError: UndefVarError: `EnvironmentLayer` not defined in `Main.var"##148"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:71 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:71 We can get elements of the enviornmental layer: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:79 Got exception outside of a @test LoadError: UndefVarError: `EnvironmentLayer` not defined in `Main.var"##149"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:79 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/environment.jl:79 We can create a coordinate set: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:195 Got exception outside of a @test LoadError: UndefVarError: `Coordinates` not defined in `Main.var"##150"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:195 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:195 We can create a coordinate set with number of nodes as input: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:200 Got exception outside of a @test LoadError: UndefVarError: `Coordinates` not defined in `Main.var"##151"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:200 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:200 We can create a coordinate set with environment dictionary as input: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:207 Got exception outside of a @test LoadError: UndefVarError: `Coordinates` not defined in `Main.var"##152"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:207 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:207 We can create a coordinate set with coordinates as input: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:219 Got exception outside of a @test LoadError: UndefVarError: `Coordinates` not defined in `Main.var"##153"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:223 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:223 We can create a coordinate set with environment layer as input: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:234 Got exception outside of a @test LoadError: UndefVarError: `EnvironmentLayer` not defined in `Main.var"##154"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:234 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:234 We can create a coordinate set with many environment layers as input: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:245 Got exception outside of a @test LoadError: UndefVarError: `EnvironmentLayer` not defined in `Main.var"##155"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] (::Main.var"##155".var"#2#3")(i::Int64) @ Main.var"##155" ./none:-1 [2] iterate @ ./generator.jl:48 [inlined] [3] collect(itr::Base.Generator{UnitRange{Int64}, Main.var"##155".var"#2#3"}) @ Base ./array.jl:828 [4] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:245 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [7] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [8] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [9] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [10] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [11] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [12] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [13] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [15] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [17] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [19] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [20] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [21] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/coordinates.jl:245 We can create a spatial graph: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:94 Got exception outside of a @test LoadError: UndefVarError: `SpatialGraph` not defined in `Main.var"##156"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:94 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:94 We can create a spatial graph with custom coordinates as positional argument: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:99 Got exception outside of a @test LoadError: UndefVarError: `Coordinates` not defined in `Main.var"##157"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:99 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:99 We can create a spatial graph with custom kernel as positional argument: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:107 Got exception outside of a @test LoadError: UndefVarError: `DispersalKernel` not defined in `Main.var"##158"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:107 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:107 We can create a spatial graph with custom kernel and coordinates as positional arguments both ways: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:114 Got exception outside of a @test LoadError: UndefVarError: `DispersalKernel` not defined in `Main.var"##159"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:114 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:114 We can create a spatial graph with custom coordinates as keyword argument: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:130 Got exception outside of a @test LoadError: UndefVarError: `Coordinates` not defined in `Main.var"##160"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:130 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:130 We can create a spatial graph with custom kernel as keyword argument: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:137 Got exception outside of a @test LoadError: UndefVarError: `DispersalKernel` not defined in `Main.var"##161"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:137 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:137 We can create a spatial graph with both custom kernel and coordinates as keyword argument: Error During Test at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:144 Got exception outside of a @test LoadError: UndefVarError: `DispersalKernel` not defined in `Main.var"##162"` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:144 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2988 [4] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2998 [5] #run_testitem##6 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] [6] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 [7] #run_testitem##4 @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] [8] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String) @ Base.Filesystem ./file.jl:112 [9] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 [10] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:276 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [12] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:274 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [14] macro expansion @ ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:252 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:2130 [inlined] [16] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:249 [17] run_tests(path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 [18] top-level scope @ ~/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [23] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/src/spatialgraph.jl:144 Test Summary: | Error Total Time Package | 22 22 14m21.9s src/models/rosenzweigmacarthur.jl | 1 1 14m20.7s Rosenzweig-MacArthur constructor works | 1 1 14m20.6s src/dispersal/kernel.jl | 2 2 0.1s We can create a dispersal kernel | 1 1 0.1s We can create a dispersal with custom maximum dispersal distance | 1 1 0.0s src/models/bevertonholt.jl | 2 2 0.7s Beverton-Holt constructor works | 2 2 0.7s src/environment.jl | 4 4 0.0s We can create an environment layer | 1 1 0.0s We can create an environment layer with different generators | 1 1 0.0s We can measure the size of an environmental layer | 1 1 0.0s We can get elements of the enviornmental layer | 1 1 0.0s src/coordinates.jl | 6 6 0.4s We can create a coordinate set | 1 1 0.0s We can create a coordinate set with number of nodes as input | 1 1 0.0s We can create a coordinate set with environment dictionary as input | 1 1 0.0s We can create a coordinate set with coordinates as input | 1 1 0.2s We can create a coordinate set with environment layer as input | 1 1 0.0s We can create a coordinate set with many environment layers as input | 1 1 0.1s src/spatialgraph.jl | 7 7 0.0s We can create a spatial graph | 1 1 0.0s We can create a spatial graph with custom coordinates as positional argument | 1 1 0.0s We can create a spatial graph with custom kernel as positional argument | 1 1 0.0s We can create a spatial graph with custom kernel and coordinates as positional arguments both ways | 1 1 0.0s We can create a spatial graph with custom coordinates as keyword argument | 1 1 0.0s We can create a spatial graph with custom kernel as keyword argument | 1 1 0.0s We can create a spatial graph with both custom kernel and coordinates as keyword argument | 1 1 0.0s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 22 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MetacommunityDynamics/jOXUg/test/runtests.jl:3 Testing failed after 902.45s ERROR: LoadError: Package MetacommunityDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:3010 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2859 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 2116.0s: package tests unexpectedly errored