Package evaluation to test CellMetabolism on Julia 1.12.4 (01a2eadb04*) started at 2026-01-09T07:22:47.271 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.44s ################################################################################ # Installation # Installing CellMetabolism... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [d7c5e2dd] + CellMetabolism v0.2.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [49dc2e85] + Calculus v0.5.2 [d7c5e2dd] + CellMetabolism v0.2.1 [29f58b35] + CellMetabolismBase v0.3.1 [d360d2e6] + ChainRulesCore v1.26.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [1a297f60] + FillArrays v1.15.0 [f6369f11] + ForwardDiff v1.3.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [2ee39098] + LabelledArrays v1.17.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [eff96d63] + Measurements v2.14.1 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.43.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [0bca4576] + SciMLBase v2.132.0 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.59s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:306 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:317 │ [9] _start() │ @ Base ./client.jl:550 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3596.6 ms ✓ SciMLBase → SciMLBaseMeasurementsExt 62842.4 ms ✓ CellMetabolismBase 15032.1 ms ✓ CellMetabolism 3 dependencies successfully precompiled in 86 seconds. 128 already precompiled. Precompilation completed after 98.08s ################################################################################ # Testing # Testing CellMetabolism Status `/tmp/jl_Rvt0S8/Project.toml` [4c88cf16] Aqua v0.8.14 [6e4b80f9] BenchmarkTools v1.6.3 [d7c5e2dd] CellMetabolism v0.2.1 [29f58b35] CellMetabolismBase v0.3.1 [31c24e10] Distributions v0.25.123 ⌅ [c3a54625] JET v0.10.14 [2ee39098] LabelledArrays v1.17.0 [eff96d63] Measurements v2.14.1 [1dea7af3] OrdinaryDiffEq v6.105.0 [f8b46487] TestItemRunner v1.1.4 [8dfed614] Test v1.11.0 Status `/tmp/jl_Rvt0S8/Manifest.toml` [47edcb42] ADTypes v1.21.0 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [4fba245c] ArrayInterface v7.22.0 [6e4b80f9] BenchmarkTools v1.6.3 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.2 [2a0fbf3d] CPUSummary v0.2.7 [49dc2e85] Calculus v0.5.2 [d7c5e2dd] CellMetabolism v0.2.1 [29f58b35] CellMetabolismBase v0.3.1 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [2b5f629d] DiffEqBase v6.195.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.13 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.18 [d4d017d3] ExponentialUtilities v1.29.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.0 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.10.14 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.9 [70703baa] JuliaSyntax v1.0.2 [ba0b0d4f] Krylov v0.10.3 [2ee39098] LabelledArrays v1.17.0 [10f19ff3] LayoutPointers v0.1.17 [87fe0de2] LineSearch v0.1.5 [d3d80556] LineSearches v7.6.0 [7ed4a6bd] LinearSolve v3.56.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [6f1432cf] LoweredCodeUtils v3.5.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [2e0e35c7] 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OrdinaryDiffEqLowOrderRK v1.9.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.10.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.18.0 [c9986a66] OrdinaryDiffEqNordsieck v1.7.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.9.0 [5b33eab2] OrdinaryDiffEqPRK v1.7.0 [04162be5] OrdinaryDiffEqQPRK v1.7.0 [af6ede74] OrdinaryDiffEqRKN v1.8.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.21.0 [2d112036] OrdinaryDiffEqSDIRK v1.10.0 [669c94d9] OrdinaryDiffEqSSPRK v1.10.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.9.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.7.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.10.0 [b1df2697] OrdinaryDiffEqTsit5 v1.8.0 [79d7bb75] OrdinaryDiffEqVerner v1.9.0 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 ⌅ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [817f1d60] ReTestItems v1.35.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] 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v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition rate(CellMetabolismBase.Enzyme{:GLUT1, (:Glucose_media,), (:Glucose,), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:220 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:HK1, (:Glucose, :ATP), (:G6P, :ADP), (:Phosphate,), (:G6P,)}, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:232 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:HK1, (:Glucose, :ATP), (:G6P, :ADP), (:Phosphate,), (:G6P,)}, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:266 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:HK1, (:Glucose, :ATP), (:G6P, :ADP), (:Phosphate,), (:G6P,)}, Any, Base.Val{:G6P}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:274 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:HK1, (:Glucose, :ATP), (:G6P, :ADP), (:Phosphate,), (:G6P,)}, Any, Base.Val{:Phosphate}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:281 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:GPI, (:G6P,), (:F6P,), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:287 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:296 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:342 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any, Base.Val{:Phosphate}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:354 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any, Base.Val{:ADP}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:364 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any, Base.Val{:F26BP}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:374 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any, Base.Val{:ATP}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:385 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PFKP, (:F6P, :ATP), (:F16BP, :ADP), (:Phosphate, :ADP, :F26BP), (:ATP, :Citrate)}, Any, Base.Val{:Citrate}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:395 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:ALDO, (:F16BP,), (:GAP, :DHAP), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:405 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:TPI, (:DHAP,), (:GAP,), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:423 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:GAPDH, (:GAP, :NAD, :Phosphate), (:BPG, :NADH), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:433 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:PGK, (:BPG, :ADP), (:ThreePG, :ATP), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:471 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:PGAM, (:ThreePG,), (:TwoPG,), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:495 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:ENO, (:TwoPG,), (:PEP,), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:508 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:PKM2, (:PEP, :ADP), (:Pyruvate, :ATP), (:F16BP,), (:Phenylalanine,)}, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:518 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PKM2, (:PEP, :ADP), (:Pyruvate, :ATP), (:F16BP,), (:Phenylalanine,)}, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:564 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PKM2, (:PEP, :ADP), (:Pyruvate, :ATP), (:F16BP,), (:Phenylalanine,)}, Any, Base.Val{:F16BP}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:576 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition remove_regulation(CellMetabolismBase.Enzyme{:PKM2, (:PEP, :ADP), (:Pyruvate, :ATP), (:F16BP,), (:Phenylalanine,)}, Any, Base.Val{:Phenylalanine}) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:586 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:LDH, (:Pyruvate, :NADH), (:Lactate, :NAD), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:598 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:MCT, (:Lactate,), (:Lactate_media,), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:626 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:AK, (:ADP, :ADP), (:ATP, :AMP), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:639 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:NDPK, (:ATP, :NDP), (:ADP, :NTP), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:651 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). WARNING: Method definition rate(CellMetabolismBase.Enzyme{:ATPase, (:ATP,), (:ADP, :Phosphate), Activators, Inhibitors} where Inhibitors where Activators, Any, Any) in module CellMetabolism at /home/pkgeval/.julia/packages/CellMetabolism/M7u57/src/enzyme_rates_and_parameters.jl:664 overwritten in module CellMetabolism on the same line (check for duplicate calls to `include`). Precompiling packages... 45872.9 ms ✓ ExponentialUtilities 4499.1 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 21666.6 ms ✓ LinearSolve 5471.6 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 12099.4 ms ✓ SciMLJacobianOperators 9057.9 ms ✓ LinearSolve → LinearSolveForwardDiffExt 9180.2 ms ✓ LinearSolve → LinearSolveSparseArraysExt 11458.1 ms ✓ LineSearch 22984.3 ms ✓ NonlinearSolveBase 4963.9 ms ✓ LinearSolve → LinearSolveEnzymeExt 3529.3 ms ✓ LineSearch → LineSearchLineSearchesExt 5969.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 5103.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 4494.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3830.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 7268.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4113.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 10457.1 ms ✓ BracketingNonlinearSolve 19316.2 ms ✓ NonlinearSolveSpectralMethods 34719.2 ms ✓ NonlinearSolveQuasiNewton 54687.2 ms ✓ NonlinearSolveFirstOrder 4242.1 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 8369.6 ms ✓ DiffEqBase 4719.7 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 6384.8 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 4152.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 22474.0 ms ✓ SimpleNonlinearSolve 4826.9 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4669.4 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4855.8 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 19026.6 ms ✓ OrdinaryDiffEqCore 4497.5 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 4492.6 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 40958.1 ms ✓ NonlinearSolve 7165.9 ms ✓ OrdinaryDiffEqExplicitRK 8341.2 ms ✓ OrdinaryDiffEqHighOrderRK 8884.0 ms ✓ OrdinaryDiffEqStabilizedRK 7712.8 ms ✓ OrdinaryDiffEqSymplecticRK 9607.0 ms ✓ OrdinaryDiffEqSSPRK 10586.3 ms ✓ OrdinaryDiffEqLowOrderRK 7400.4 ms ✓ OrdinaryDiffEqFunctionMap 9828.7 ms ✓ OrdinaryDiffEqLinear 16456.8 ms ✓ OrdinaryDiffEqTsit5 75226.5 ms ✓ OrdinaryDiffEqVerner 8015.3 ms ✓ OrdinaryDiffEqPRK 8459.5 ms ✓ OrdinaryDiffEqRKN 8375.8 ms ✓ OrdinaryDiffEqFeagin 7462.9 ms ✓ OrdinaryDiffEqQPRK 10696.0 ms ✓ OrdinaryDiffEqLowStorageRK 21712.4 ms ✓ OrdinaryDiffEqDifferentiation 8398.9 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 6947.2 ms ✓ OrdinaryDiffEqNordsieck 7626.4 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 15066.8 ms ✓ OrdinaryDiffEqExponentialRK 14091.5 ms ✓ OrdinaryDiffEqExtrapolation 50068.8 ms ✓ OrdinaryDiffEqRosenbrock 22111.3 ms ✓ OrdinaryDiffEqNonlinearSolve 12759.9 ms ✓ OrdinaryDiffEqStabilizedIRK 15863.6 ms ✓ OrdinaryDiffEqSDIRK 60734.7 ms ✓ OrdinaryDiffEqFIRK 13294.2 ms ✓ OrdinaryDiffEqIMEXMultistep 12718.5 ms ✓ OrdinaryDiffEqPDIRK 32251.2 ms ✓ OrdinaryDiffEqBDF 83473.2 ms ✓ OrdinaryDiffEqDefault 23352.3 ms ✓ OrdinaryDiffEq 65 dependencies successfully precompiled in 1041 seconds. 176 already precompiled. Precompiling packages... 4109.9 ms ✓ DiffEqBase → DiffEqBaseMeasurementsExt 1 dependency successfully precompiled in 5 seconds. 102 already precompiled. Test Summary: | Pass Total Time Package | 13 13 21m40.4s Testing CellMetabolism tests passed Testing completed after 1343.18s PkgEval succeeded after 1481.8s