Package evaluation to test BioCCP on Julia 1.13.0-alpha2.30 (5abf758bb1*) started at 2026-01-09T01:54:17.790


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 7.72s


################################################################################
# Installation
#

Installing BioCCP...
   Resolving package versions...
   Installed Rmath_jll ─────────────── v0.5.1+0
   Installed DataAPI ───────────────── v1.16.0
   Installed OrderedCollections ────── v1.8.1
   Installed HypergeometricFunctions ─ v0.3.28
   Installed FillArrays ────────────── v1.15.0
   Installed AliasTables ───────────── v1.1.3
   Installed DataStructures ────────── v0.19.3
   Installed StatsBase ─────────────── v0.34.9
   Installed Statistics ────────────── v1.11.1
   Installed OpenSpecFun_jll ───────── v0.5.6+0
   Installed StatsAPI ──────────────── v1.8.0
   Installed IrrationalConstants ───── v0.2.6
   Installed QuadGK ────────────────── v2.11.2
   Installed LogExpFunctions ───────── v0.3.29
   Installed Rmath ─────────────────── v0.9.0
   Installed StatsFuns ─────────────── v1.5.2
   Installed Distributions ─────────── v0.25.123
   Installed PtrArrays ─────────────── v1.3.0
   Installed Reexport ──────────────── v1.2.2
   Installed Missings ──────────────── v1.2.0
   Installed SpecialFunctions ──────── v2.6.1
   Installed JLLWrappers ───────────── v1.7.1
   Installed Preferences ───────────── v1.5.1
   Installed SortingAlgorithms ─────── v1.2.2
   Installed PDMats ────────────────── v0.11.37
   Installed DocStringExtensions ───── v0.9.5
   Installed BioCCP ────────────────── v0.1.1
  Installing 2 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact OpenSpecFun 194.9 KiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [79e6b149] + BioCCP v0.1.1
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [79e6b149] + BioCCP v0.1.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [31c24e10] + Distributions v0.25.123
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.15.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.37
  [21216c6a] + Preferences v1.5.1
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 7.2s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4482.0 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

Precompiling package dependencies...

Precompilation completed after 88.66s


################################################################################
# Testing
#

     Testing BioCCP
     Cloning git-repo `https://github.com/kirstvh/BioCCP`

Testing failed after 4.34s

ERROR: LoadError: MethodError: no method matching startswith(::Base.SHA1, ::String)
The function `startswith` exists, but no method is defined for this combination of argument types.

Closest candidates are:
  startswith(!Matched::IO, ::Union{SubString{String}, String})
   @ Base strings/util.jl:93
  startswith(!Matched::IO, ::AbstractString)
   @ Base strings/util.jl:99
  startswith(!Matched::Union{SubString{String}, String}, ::Union{SubString{String}, String})
   @ Base strings/util.jl:69
  ...

Stacktrace:
  [1] (::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String})(repo::LibGit2.GitRepo)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:1027
  [2] with(f::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String}, obj::LibGit2.GitRepo)
    @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/types.jl:1230
  [3] handle_repo_add!(ctx::Pkg.Types.Context, pkg::PackageSpec)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:1013
  [4] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:611
  [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:743
  [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2434
  [7] up
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2408 [inlined]
  [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:465
  [9] up
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:433 [inlined]
 [10] up
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:177 [inlined]
 [11] #resolve#170
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:471 [inlined]
 [12] resolve
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:470 [inlined]
 [13] (::Pkg.Operations.var"#215#216"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#230#231"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})()
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2758
 [14] with_temp_env(fn::Pkg.Operations.var"#215#216"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#230#231"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2628
 [15] (::Pkg.Operations.var"#211#212"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#230#231"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2742
 [16] mktempdir(fn::Pkg.Operations.var"#211#212"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#230#231"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:936
 [17] mktempdir(fn::Function, parent::String)
    @ Base.Filesystem ./file.jl:932
 [18] #sandbox#207
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2689 [inlined]
 [19] kwcall(::@NamedTuple{preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool}, ::typeof(Pkg.Operations.sandbox), fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override::Nothing)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2679
 [20] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2953
 [21] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2859 [inlined]
 [22] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:572
 [23] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548
 [24] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172
 [25] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161
 [26] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160
 [27] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined]
 [28] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159
 [29] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [30] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [31] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [32] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 246.81s: there were unidentified errors