Package evaluation to test Bactos on Julia 1.13.0-alpha2.30 (5abf758bb1*) started at 2026-01-09T19:09:32.634 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.34s ################################################################################ # Installation # Installing Bactos... Resolving package versions... Installed CommonWorldInvalidations ──────────── v1.0.0 Installed FastPower ─────────────────────────── v1.3.0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed InlineStrings ─────────────────────── v1.4.5 Installed OrderedCollections ────────────────── v1.8.1 Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed EnzymeCore ────────────────────────── v0.8.18 Installed SpatialIndexing ───────────────────── v0.1.6 Installed SimpleWeightedGraphs ──────────────── v1.5.1 Installed NearestNeighbors ──────────────────── v0.4.26 Installed PreallocationTools ────────────────── v0.4.34 Installed OrdinaryDiffEqExponentialRK ───────── v1.11.0 Installed OrdinaryDiffEqRosenbrock ──────────── v1.21.0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed SentinelArrays ────────────────────── v1.4.9 Installed Distances ─────────────────────────── v0.10.12 Installed NaNMath ───────────────────────────── v1.1.3 Installed OrdinaryDiffEqFIRK ────────────────── v1.19.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed StaticArrayInterface ──────────────── v1.8.0 Installed FiniteDifferences ─────────────────── v0.12.33 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.7.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed FileIO ────────────────────────────── v1.17.1 Installed EnumX ─────────────────────────────── v1.0.5 Installed Tables ────────────────────────────── v1.12.1 Installed NonlinearSolveBase ────────────────── v2.9.0 Installed NLSolversBase ─────────────────────── v8.0.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.9.0 Installed BracketingNonlinearSolve ──────────── v1.6.2 Installed DiffEqBase ────────────────────────── v6.195.0 Installed Jieko ─────────────────────────────── v0.2.1 Installed InverseFunctions ──────────────────── v0.1.17 Installed LinearSolve ───────────────────────── v3.56.0 Installed Reexport ──────────────────────────── v1.2.2 Installed Preferences ───────────────────────── v1.5.1 Installed Missings ──────────────────────────── v1.2.0 Installed TableTraits ───────────────────────── v1.0.1 Installed Static ────────────────────────────── v1.3.1 Installed NonlinearSolve ────────────────────── v4.13.0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed Crayons ───────────────────────────── v4.1.1 Installed UnPack ────────────────────────────── v1.0.2 Installed OrdinaryDiffEqNordsieck ───────────── v1.7.0 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.8.0 Installed ADTypes ───────────────────────────── v1.21.0 Installed RecursiveArrayTools ───────────────── v3.43.0 Installed OrdinaryDiffEqLinear ──────────────── v1.9.0 Installed Inflate ───────────────────────────── v0.1.5 Installed MacroTools ────────────────────────── v0.5.16 Installed DiffResults ───────────────────────── v1.1.0 Installed URIs ──────────────────────────────── v1.6.1 Installed ManualMemory ──────────────────────── v0.1.8 Installed GenericSchur ──────────────────────── v0.5.6 Installed Quaternions ───────────────────────── v0.7.7 Installed DataStructures ────────────────────── v0.18.22 Installed FillArrays ────────────────────────── v1.15.0 Installed AbstractTrees ─────────────────────── v0.4.5 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ExprTools ─────────────────────────── v0.1.10 Installed ArnoldiMethod ─────────────────────── v0.4.0 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed ArrayInterface ────────────────────── v7.22.0 Installed StatsBase ─────────────────────────── v0.34.9 Installed SciMLJacobianOperators ────────────── v0.1.12 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed DataValueInterfaces ───────────────── v1.0.0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed Richardson ────────────────────────── v1.4.2 Installed LoggingExtras ─────────────────────── v1.2.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed ConcreteStructs ───────────────────── v0.2.3 Installed IrrationalConstants ───────────────── v0.2.6 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed QuickHeaps ────────────────────────── v0.1.2 Installed RealDot ───────────────────────────── v0.1.0 Installed Bactos ────────────────────────────── v0.0.1 Installed SimpleTraits ──────────────────────── v0.9.5 Installed BitFlags ──────────────────────────── v0.1.9 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.9.0 Installed HTTP ──────────────────────────────── v1.10.19 Installed OrdinaryDiffEqExtrapolation ───────── v1.12.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.8.0 Installed SimpleBufferStream ────────────────── v1.2.0 Installed Setfield ──────────────────────────── v1.1.2 Installed Scratch ───────────────────────────── v1.3.0 Installed PooledArrays ──────────────────────── v1.4.3 Installed MetaGraphs ────────────────────────── v0.7.2 Installed PDMats ────────────────────────────── v0.11.37 Installed WorkerUtilities ───────────────────── v1.6.1 Installed NonlinearSolveQuasiNewton ─────────── v1.12.0 Installed OrdinaryDiffEqPRK ─────────────────── v1.7.0 Installed Agents ────────────────────────────── v5.17.2 Installed Moshi ─────────────────────────────── v0.3.7 Installed DifferentiationInterface ──────────── v0.7.13 Installed CompositionsBase ──────────────────── v0.1.2 Installed CommonSolve ───────────────────────── v0.2.6 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed DocStringExtensions ───────────────── v0.9.5 Installed LightXML ──────────────────────────── v0.9.3 Installed ForwardDiff ───────────────────────── v1.3.1 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.8.0 Installed OrdinaryDiffEq ────────────────────── v6.105.0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed AliasTables ───────────────────────── v1.1.3 Installed ConcurrentUtilities ───────────────── v2.5.0 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed LineSearch ────────────────────────── v0.1.5 Installed RecipesBase ───────────────────────── v1.3.4 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed DataAPI ───────────────────────────── v1.16.0 Installed InvertedIndices ───────────────────── v1.3.1 Installed OrdinaryDiffEqBDF ─────────────────── v1.13.0 Installed OrdinaryDiffEqSymplecticRK ────────── v1.10.0 Installed SciMLOperators ────────────────────── v1.14.1 Installed SciMLStructures ───────────────────── v1.9.0 Installed Krylov ────────────────────────────── v0.10.3 Installed StaticArrays ──────────────────────── v1.9.16 Installed StaticArraysCore ──────────────────── v1.4.4 Installed OrdinaryDiffEqStabilizedRK ────────── v1.7.0 Installed SciMLPublic ───────────────────────── v1.0.1 Installed Requires ──────────────────────────── v1.3.1 Installed StringManipulation ────────────────── v0.4.2 Installed OrdinaryDiffEqLowStorageRK ────────── v1.10.0 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DiffRules ─────────────────────────── v1.15.1 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.18.0 Installed FunctionWrappers ──────────────────── v1.1.3 Installed OrdinaryDiffEqDifferentiation ─────── v1.21.0 Installed JSON ──────────────────────────────── v0.21.4 Installed Parsers ───────────────────────────── v2.8.3 Installed OrdinaryDiffEqCore ────────────────── v2.3.0 Installed LightOSM ──────────────────────────── v0.2.11 Installed SciMLBase ─────────────────────────── v2.132.0 Installed PrettyTables ──────────────────────── v3.1.2 Installed NonlinearSolveFirstOrder ──────────── v1.11.0 Installed Rmath ─────────────────────────────── v0.9.0 Installed FiniteDiff ────────────────────────── v2.29.0 Installed Distributions ─────────────────────── v0.25.123 Installed CSV ───────────────────────────────── v0.10.15 Installed OrdinaryDiffEqExplicitRK ──────────── v1.7.0 Installed FastClosures ──────────────────────── v0.3.2 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed StatsFuns ─────────────────────────── v1.5.2 Installed Polyester ─────────────────────────── v0.7.18 Installed OrdinaryDiffEqFeagin ──────────────── v1.7.0 Installed ArrayTools ────────────────────────── v0.2.7 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.10.0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed TestItems ─────────────────────────── v0.1.1 Installed DataFrames ────────────────────────── v1.8.1 Installed ThreadingUtilities ────────────────── v0.5.5 Installed OrdinaryDiffEqSDIRK ───────────────── v1.10.0 Installed Graphs ────────────────────────────── v1.13.1 Installed FilePathsBase ─────────────────────── v0.9.24 Installed Accessors ─────────────────────────── v0.1.43 Installed OrdinaryDiffEqPDIRK ───────────────── v1.9.0 Installed OrdinaryDiffEqDefault ─────────────── v1.11.0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.10.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed Adapt ─────────────────────────────── v4.4.0 Installed ConstructionBase ──────────────────── v1.6.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed ExponentialUtilities ──────────────── v1.29.0 Installed OrdinaryDiffEqVerner ──────────────── v1.9.0 Installed JLD2 ──────────────────────────────── v0.4.55 Installed Compat ────────────────────────────── v4.18.1 Installed ExceptionUnwrapping ───────────────── v0.1.11 Installed StrideArraysCore ──────────────────── v0.5.8 Installed Statistics ────────────────────────── v1.11.1 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed TranscodingStreams ────────────────── v0.11.3 Installed StatsAPI ──────────────────────────── v1.8.0 Installed CellListMap ───────────────────────── v0.8.32 Installed TimerOutputs ──────────────────────── v0.5.29 Installed PrecompileTools ───────────────────── v1.3.3 Installed ExproniconLite ────────────────────── v0.10.14 Installed MbedTLS ───────────────────────────── v1.1.9 Installed ProgressMeter ─────────────────────── v1.11.0 Installed OpenSSL ───────────────────────────── v1.6.1 Installed CPUSummary ────────────────────────── v0.2.7 Installed IfElse ────────────────────────────── v0.1.1 Installed Parameters ────────────────────────── v0.12.3 Installed MuladdMacro ───────────────────────── v0.2.4 Installed SciMLLogging ──────────────────────── v1.8.0 Installed ChainRulesCore ────────────────────── v1.26.0 Installed StaticGraphs ──────────────────────── v0.3.1 Installed ReTestItems ───────────────────────── v1.35.0 Installed XML2_jll ──────────────────────────── v2.15.1+0 Installed PtrArrays ─────────────────────────── v1.3.0 Installed SimpleNonlinearSolve ──────────────── v2.10.0 Installed MbedTLS_jll ───────────────────────── v2.28.1010+0 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed LineSearches ──────────────────────── v7.6.0 Installed SpecialFunctions ──────────────────── v2.6.1 Installed Rotations ─────────────────────────── v1.7.1 Installed PolyesterWeave ────────────────────── v0.2.2 Installed OrdinaryDiffEqFunctionMap ─────────── v1.8.0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.8.0 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.2 MiB Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.13/Project.toml` [d33a0dba] + Bactos v0.0.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 ⌅ [46ada45e] + Agents v5.17.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 ⌅ [1dc0ca97] + ArrayTools v0.2.7 [d33a0dba] + Bactos v0.0.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 ⌅ [69e1c6dd] + CellListMap v0.8.32 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.195.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.13 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.18 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.29.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.0 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [26cc04aa] + FiniteDifferences v0.12.33 [f6369f11] + ForwardDiff v1.3.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 ⌃ [86223c79] + Graphs v1.13.1 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [ba0b0d4f] + Krylov v0.10.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 ⌅ [d1922b25] + LightOSM v0.2.11 [9c8b4983] + LightXML v0.9.3 [87fe0de2] + LineSearch v0.1.5 [d3d80556] + LineSearches v7.6.0 [7ed4a6bd] + LinearSolve v3.56.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v8.0.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.26 [8913a72c] + NonlinearSolve v4.13.0 [be0214bd] + NonlinearSolveBase v2.9.0 [5959db7a] + NonlinearSolveFirstOrder v1.11.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.105.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.8.0 [6ad6398a] + OrdinaryDiffEqBDF v1.13.0 [bbf590c4] + OrdinaryDiffEqCore v2.3.0 [50262376] + OrdinaryDiffEqDefault v1.11.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.21.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.7.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.11.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.12.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.19.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.7.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.8.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.8.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.10.0 [521117fe] + OrdinaryDiffEqLinear v1.9.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.9.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.10.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.18.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.7.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.9.0 [5b33eab2] + OrdinaryDiffEqPRK v1.7.0 [04162be5] + OrdinaryDiffEqQPRK v1.7.0 [af6ede74] + OrdinaryDiffEqRKN v1.8.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.21.0 [2d112036] + OrdinaryDiffEqSDIRK v1.10.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.10.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.9.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.7.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.10.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.8.0 [79d7bb75] + OrdinaryDiffEqVerner v1.9.0 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.7 ⌅ [30b38841] + QuickHeaps v0.1.2 [817f1d60] + ReTestItems v1.35.0 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.43.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.9.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.132.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.9.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [727e6d20] + SimpleNonlinearSolve v2.10.0 [699a6c99] + SimpleTraits v0.9.5 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [d4ead438] + SpatialIndexing v0.1.6 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 ⌅ [4c8beaf5] + StaticGraphs v0.3.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [1e6cf692] + TestEnv v1.103.1 ⌅ [1c621080] + TestItems v0.1.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 16.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4836.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 620.91s ################################################################################ # Testing # Testing Bactos Status `/tmp/jl_W1RLdJ/Project.toml` ⌅ [46ada45e] Agents v5.17.2 [d33a0dba] Bactos v0.0.1 ⌅ [69e1c6dd] CellListMap v0.8.32 [31c24e10] Distributions v0.25.123 [26cc04aa] FiniteDifferences v0.12.33 [1dea7af3] OrdinaryDiffEq v6.105.0 [6038ab10] Rotations v1.7.1 [90137ffa] StaticArrays v1.9.16 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_W1RLdJ/Manifest.toml` [47edcb42] ADTypes v1.21.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 ⌅ [46ada45e] Agents v5.17.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [d33a0dba] Bactos v0.0.1 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.2 [2a0fbf3d] CPUSummary v0.2.7 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[358294b1] OrdinaryDiffEqStabilizedRK v1.7.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.10.0 [b1df2697] OrdinaryDiffEqTsit5 v1.8.0 [79d7bb75] OrdinaryDiffEqVerner v1.9.0 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 ⌅ [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.7 ⌅ [30b38841] QuickHeaps v0.1.2 [817f1d60] ReTestItems v1.35.0 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.43.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [6038ab10] Rotations v1.7.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.132.0 [19f34311] SciMLJacobianOperators v0.1.12 [a6db7da4] SciMLLogging v1.8.0 [c0aeaf25] SciMLOperators v1.14.1 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.10.0 [699a6c99] SimpleTraits v0.9.5 [47aef6b3] SimpleWeightedGraphs v1.5.1 [a2af1166] SortingAlgorithms v1.2.2 [0a514795] SparseMatrixColorings v0.4.23 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 ⌅ [4c8beaf5] StaticGraphs v0.3.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.2 [2efcf032] SymbolicIndexingInterface v0.3.46 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [1e6cf692] TestEnv v1.103.1 ⌅ [1c621080] TestItems v0.1.1 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.15.1+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Update message: Agents v5.15 Welcome to this new update of Agents.jl! Noteworthy changes: - Agents.jl moved to Julia 1.9+, and now exports visualization and interactive applications automatically once Makie (or Makie backends such as GLMakie) come into scope, using the new package extension system. The only downside of this is that now to visualize ABMs on open street maps, the package OSMMakie.jl must be explicitly loaded as well. InteractiveDynamics.jl is now obsolete. - Several performance improvements all across the board. - DEI-motivated name change for all names that remove agents: - `genocide! -> remove_all!` - `kill_agent! -> remove_agent!` - `UnkillableABM -> UnremovableABM` - We have created an objective fully automated framework for comparing open source agent based modelling software. It shows that Agents.jl is much faster than competing alternatives (MASON, NetLogo, Mesa). See the online documentation for more! ERROR: LoadError: cannot declare CellListMap.copy_output exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [2] top-level scope @ ~/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:49 [3] include(mod::Module, _path::String) @ Base ./Base.jl:309 [4] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [6] macro expansion @ ./loading.jl:2498 [inlined] [7] macro expansion @ ./lock.jl:376 [inlined] [8] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [9] require @ ./loading.jl:2438 [inlined] [10] eval_import_path @ ./module.jl:36 [inlined] [11] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [12] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [13] top-level scope @ ~/.julia/packages/Bactos/tHnWL/src/Bactos.jl:4 [14] include(mod::Module, _path::String) @ Base ./Base.jl:309 [15] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2811 [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2570 [17] macro expansion @ ./loading.jl:2498 [inlined] [18] macro expansion @ ./lock.jl:376 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2462 [20] require @ ./loading.jl:2438 [inlined] [21] eval_import_path @ ./module.jl:36 [inlined] [22] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [23] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [24] top-level scope @ ~/.julia/packages/Bactos/tHnWL/test/runtests.jl:1 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ none:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [29] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/ParticleSystem.jl:5 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:1 in expression starting at /home/pkgeval/.julia/packages/Bactos/tHnWL/src/Bactos.jl:1 in expression starting at /home/pkgeval/.julia/packages/Bactos/tHnWL/test/runtests.jl:1 Testing failed after 713.49s ERROR: LoadError: Package Bactos errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:3010 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2859 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1404.94s: package tests unexpectedly errored