Package evaluation to test ACEfit on Julia 1.13.0-alpha2.30 (5abf758bb1*) started at 2026-01-09T09:40:51.366 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.96s ################################################################################ # Installation # Installing ACEfit... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [ad31a8ef] + ACEfit v0.3.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [ad31a8ef] + ACEfit v0.3.0 [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [d86c1dc8] + ActiveSetPursuit v0.0.4 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.13 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [d3d80556] + LineSearches v7.5.1 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [898213cb] + LowRankApprox v0.5.5 [e65ccdef] + LowRankMatrices v1.0.2 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [2dcacdae] + ParallelDataTransfer v0.5.1 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [29d2ae51] + QRupdate v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iseFl/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompilation completed after 376.82s ################################################################################ # Testing # Testing ACEfit Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_9MGoaq/Project.toml` [ad31a8ef] + ACEfit v0.3.0 ⌃ [add582a8] + MLJ v0.19.5 ⌃ [6ee0df7b] + MLJLinearModels v0.9.2 [5ae90465] + MLJScikitLearnInterface v0.7.0 [6099a3de] + PythonCall v0.9.31 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_9MGoaq/Manifest.toml` [ad31a8ef] + ACEfit v0.3.0 [47edcb42] + ADTypes v1.21.0 ⌃ [da404889] + ARFFFiles v1.5.0 [621f4979] + AbstractFFTs v1.5.0 [d86c1dc8] + ActiveSetPursuit v0.0.4 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [d1d4a3ce] + BitFlags v0.1.9 ⌅ [324d7699] + CategoricalArrays v0.10.8 ⌅ [af321ab8] + CategoricalDistributions v0.1.15 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [992eb4ea] + CondaPkg v0.2.33 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.13 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [792122b4] + EarlyStopping v0.3.0 [4e289a0a] + EnumX v1.0.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [b3c1a2ee] + IterationControl v0.5.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [a5e1c1ea] + LatinHypercubeSampling v1.9.0 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [30fc2ffe] + LossFunctions v0.11.2 [898213cb] + LowRankApprox v0.5.5 [e65ccdef] + LowRankMatrices v1.0.2 ⌅ [64a0f543] + MLFlowClient v0.4.7 ⌃ [add582a8] + MLJ v0.19.5 ⌅ [a7f614a8] + MLJBase v0.21.14 ⌅ [50ed68f4] + MLJEnsembles v0.3.3 ⌅ [7b7b8358] + MLJFlow v0.1.1 ⌅ [614be32b] + MLJIteration v0.5.1 ⌃ [6ee0df7b] + MLJLinearModels v0.9.2 [e80e1ace] + MLJModelInterface v1.12.1 ⌅ [d491faf4] + MLJModels v0.16.17 [5ae90465] + MLJScikitLearnInterface v0.7.0 ⌅ [03970b2e] + MLJTuning v0.7.4 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 [8b6db2d4] + OpenML v0.3.3 [4d8831e6] + OpenSSL v1.6.1 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [2dcacdae] + ParallelDataTransfer v0.5.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [54e16d92] + PrettyPrinting v0.4.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.31 [29d2ae51] + QRupdate v1.0.1 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 ⌃ [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [e17b2a0c] + UnsafePointers v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_9MGoaq/Project.toml` [ad31a8ef] ACEfit v0.3.0 ⌃ [add582a8] MLJ v0.19.5 ⌃ [6ee0df7b] MLJLinearModels v0.9.2 [5ae90465] MLJScikitLearnInterface v0.7.0 [6099a3de] PythonCall v0.9.31 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_9MGoaq/Manifest.toml` [ad31a8ef] ACEfit v0.3.0 [47edcb42] ADTypes v1.21.0 ⌃ [da404889] ARFFFiles v1.5.0 [621f4979] AbstractFFTs v1.5.0 [d86c1dc8] ActiveSetPursuit v0.0.4 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [d1d4a3ce] BitFlags v0.1.9 ⌅ [324d7699] CategoricalArrays v0.10.8 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.13 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [792122b4] EarlyStopping v0.3.0 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.10.0 [9aa1b823] FastClosures v0.3.2 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.1 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [b3c1a2ee] IterationControl v0.5.4 [42fd0dbc] IterativeSolvers 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for ACEfit [ad31a8ef-59f5-4a01-b543-a85c2f73e95c] │ exception = Required dependency Base.PkgId(Base.UUID("d41bc354-129a-5804-8e4c-c37616107c6c"), "NLSolversBase") failed to load from a cache file. └ @ Base loading.jl:2789 [ Info: Test committee creation with bayesian_ridge_regression_svd. ┌ Warning: Why is such a large committee required? └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_bayesianlinear.jl:8 [ Info: Entering bayesian_linear_regression_svd ┌ Info: Computing SVD of (3, 3) matrix │ BLAS.get_num_threads() = 1 │ BLAS.get_config() = │ LinearAlgebra.BLAS.LBTConfig │ Libraries: └ └ [ILP64] libopenblas64_.so [ Info: SVD completed after 0.0004286626666666667 minutes [ Info: Beginning to maximize marginal likelihood ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-8) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Info: Optimization complete │ Results = │ * Status: success │ │ * Candidate solution │ Final objective value: 4.244509e+00 │ │ * Found with │ Algorithm: L-BFGS │ │ * Convergence measures │ |x - x'| = 2.29e-09 ≤ 1.0e-08 │ |x - x'|/|x'| = 2.42e-09 ≰ 0.0e+00 │ |f(x) - f(x')| = 0.00e+00 ≤ 0.0e+00 │ |f(x) - f(x')|/|f(x')| = 0.00e+00 ≤ 0.0e+00 │ |g(x)| = 8.72e-15 ≰ 0.0e+00 │ │ * Work counters │ Seconds run: 1 (vs limit Inf) │ Iterations: 10 │ f(x) calls: 26 │ ∇f(x) calls: 26 └ [ Info: Test error from invalid committee request. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MLJScikitLearnInterface/xHP4R/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/ACEfit/IRtHL/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml CondaPkg Resolving changes + openssl + python + scikit-learn CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_9MGoaq/.CondaPkg ✔ Created /tmp/jl_9MGoaq/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_9MGoaq/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ │ [dependencies.python] │ version = ">=3.8, >=3.10,!=3.14.0,!=3.14.1,<4" │ build = "*cp*" │ channel = "conda-forge" │ │ [dependencies.scikit-learn] │ version = ">=1.4, <1.6" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_9MGoaq/.CondaPkg/pixi.toml ✔ The default environment has been installed. [ Info: Test Solver on overdetermined system [ Info: ... QR norm(A * C - y) = 9.940851302615293e-6 norm(C) = 9.807777387369786 norm(C - c_ref) = 0.00032917802327976485 [ Info: ... regularised QR, λ = 1e-5 norm(A * C - y) = 1.0850212959645269e-5 norm(C) = 9.799903430116403 norm(C - c_ref) = 0.04376441312160622 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:42 Expression: norm(C - c_ref) < 1000 * epsn Evaluated: 0.04376441312160622 < 0.01 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:539 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:753 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [ Info: ... regularised QR, λ = 1e-2 norm(A * C - y) = 0.026980037973599116 norm(C) = 9.147607509327589 norm(C - c_ref) = 2.938232545310287 [ Info: ... RRQR, rtol = 1e-15 norm(A * C - y) = 9.940851302613102e-6 norm(C) = 9.807777387369722 norm(C - c_ref) = 0.00032917802362960843 [ Info: ... RRQR, rtol = 1e-5 norm(A * C - y) = 9.94085130261113e-6 norm(C) = 9.807777387369828 norm(C - c_ref) = 0.0003291780230415831 [ Info: ... RRQR, rtol = 1e-3 norm(A * C - y) = 0.0004843513026545283 norm(C) = 9.639953386464496 norm(C - c_ref) = 1.8118858943857714 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:94 Expression: norm(C - c_ref) < 1 Evaluated: 1.8118858943857714 < 1 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:539 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:753 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [ Info: ... LSQR ┌ Warning: Need to apply preconditioner in LSQR. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:95 damp 0 atol 1.0e-6 maxiter 100000 Converged after 336 iterations. relative RMS error 2.3813406399403676e-5 norm(A * C - y) = 9.149153327900222e-5 norm(C) = 9.733741582810525 norm(C - c_ref) = 0.46354797082511406 [ Info: ... SKLEARN_BRR ┌ Warning: SKLearn will transition to MLJ in future, please upgrade your script to reflect this. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:132 [ Info: Entering SKLEARN_BRR [ Info: BRR converged to tol=0.001 after 6 iterations. norm(A * C - y) = 1.0608040313400232e-5 norm(C) = 9.801059461938419 norm(C - c_ref) = 0.03732007537658628 [ Info: ... SKLEARN_ARD ┌ Warning: SKLearn will transition to MLJ in future, please upgrade your script to reflect this. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:148 [ Info: ARD converged to tol=0.001 after 7 iterations. norm(A * C - y) = 0.0063859125470615615 norm(C) = 9.464728595975437 norm(C - c_ref) = 1.6812932371303233 [ Info: ... BLR ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-8) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Iter Function value Gradient norm 0 9.201622e+03 9.980736e+03 * time: 0.060547828674316406 1 -6.792193e+02 2.682194e+04 * time: 0.6535840034484863 2 -4.344267e+03 3.873060e+04 * time: 0.6556198596954346 3 -1.369916e+04 9.912699e+04 * time: 0.6596088409423828 4 -1.940147e+04 1.760110e+05 * time: 0.6616768836975098 5 -2.527239e+04 3.181240e+05 * time: 0.6646139621734619 6 -3.007816e+04 5.165689e+05 * time: 0.6676850318908691 7 -4.388518e+04 2.080534e+06 * time: 0.6707639694213867 8 -7.655005e+04 4.633139e+07 * time: 0.6757798194885254 9 -7.891878e+04 4.944824e+07 * time: 0.6837518215179443 10 -8.202875e+04 1.389405e+07 * time: 0.6858789920806885 11 -8.212926e+04 7.455516e+04 * time: 0.6879220008850098 12 -8.212926e+04 5.510780e+00 * time: 0.6900649070739746 13 -8.212926e+04 3.893976e+04 * time: 0.7030229568481445 14 -8.212934e+04 3.188081e+03 * time: 0.7081189155578613 15 -8.212934e+04 1.604275e+02 * time: 0.7101988792419434 16 -8.212934e+04 3.907851e-02 * time: 0.7122550010681152 17 -8.212934e+04 1.247648e-06 * time: 0.7353818416595459 * Status: success * Candidate solution Final objective value: -8.212934e+04 * Found with Algorithm: L-BFGS * Convergence measures |x - x'| = 4.64e-09 ≤ 1.0e-08 |x - x'|/|x'| = 4.78e-09 ≰ 0.0e+00 |f(x) - f(x')| = 3.08e-08 ≰ 0.0e+00 |f(x) - f(x')|/|f(x')| = 3.75e-13 ≰ 0.0e+00 |g(x)| = 1.25e-06 ≰ 0.0e+00 * Work counters Seconds run: 1 (vs limit Inf) Iterations: 17 f(x) calls: 89 ∇f(x) calls: 89 norm(A * C - y) = 9.326182639774368e-5 norm(C) = 9.680746459095253 norm(C - c_ref) = 0.9252331490089599 [ Info: ... TruncatedSVD(; rtol = 1e-5) Truncted SVD: perform svd ... done. truncation ... done. norm(A * C - y) = 9.940851302615913e-6 norm(C) = 9.80777738736998 norm(C - c_ref) = 0.00032917802216262364 [ Info: ... TruncatedSVD(; rtol = 1e-4) Truncted SVD: perform svd ... done. truncation ... done. norm(A * C - y) = 0.00017990008272596704 norm(C) = 9.641886504008568 norm(C - c_ref) = 1.7965692571672602 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:165 Expression: norm(A * C - y) < 10 * epsn Evaluated: 0.00017990008272596704 < 0.0001 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:539 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:753 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:166 Expression: norm(C - c_ref) < 1 Evaluated: 1.7965692571672602 < 1 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:539 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:753 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [ Info: Truncated SVD with validation err_v = norm(Av * results_v["C"] - yv) = 4.573667541967411e-6 err = norm(Av * results["C"] - yv) = 8.144681778542935e-5 norm(results_v["C"] - c_ref) = 0.00010430576416522213 norm(results["C"] - c_ref) = 1.7965692571672602 [ Info: Test Solver on overdetermined system ┌ Warning: Assignment to `solver` in soft scope is ambiguous because a global variable by the same name exists: `solver` will be treated as a new local. Disambiguate by using `local solver` to suppress this warning or `global solver` to assign to the existing global variable. └ @ ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:32 ┌ Warning: Assignment to `results` in soft scope is ambiguous because a global variable by the same name exists: `results` will be treated as a new local. Disambiguate by using `local results` to suppress this warning or `global results` to assign to the existing global variable. └ @ ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:33 Test PassedTest PassedTest PassedTest PassedTest PassedTest Passedselect = :final [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = (:byerror, 1.3) [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = (:bysize, 73) [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = :final [ Info: OMP: tsvd made improvements! [ Info: OMP (val): tsvd made improvements! select = (:byerror, 1.3) [ Info: OMP: tsvd made improvements! [ Info: OMP (val): tsvd made improvements! select = (:bysize, 73) ┌ Warning: OMP: tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:115 ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 [ Info: All tests completed for ASP and OMP solvers. [ Info: Test MLJ interface on overdetermined system [ Info: ... MLJLinearModels LinearRegressor [ Info: For silent loading, specify `verbosity=0`. import MLJLinearModels ✔ [ Info: Training machine(LinearRegressor(fit_intercept = true, …), …). ┌ Info: Solver: MLJLinearModels.Analytical │ iterative: Bool false └ max_inner: Int64 200 norm(A * C - y) = 98.74811817911304 norm(C) = 9.3713949597579 [ Info: ... MLJLinearModels LassoRegressor [ Info: For silent loading, specify `verbosity=0`. import MLJLinearModels ✔ [ Info: Training machine(LassoRegressor(lambda = 1.0, …), …). ┌ Info: Solver: MLJLinearModels.ProxGrad │ accel: Bool true │ max_iter: Int64 1000 │ tol: Float64 0.0001 │ max_inner: Int64 100 └ beta: Float64 0.8 norm(A * C - y) = 99.19408257506441 norm(C) = 0.0 [ Info: ... MLJ SKLearn ARD [ Info: For silent loading, specify `verbosity=0`. import MLJScikitLearnInterface ✔ [ Info: Training machine(ARDRegressor(max_iter = 300, …), …). norm(A * C - y) = 98.91474008270282 norm(C) = 5.311166043871949 Test Summary: | Pass Fail Total Time ACEfit.jl | 55 4 59 10m35.3s Iterate | 0 0.0s Bayesian Linear | 3 3 21.1s Linear Solvers | 18 4 22 2m12.2s ASP | 34 34 2m29.7s MLJ Solvers | 0 5m32.1s RNG of the outermost testset: Xoshiro(0xc7f50fe66a7b27b7, 0xaa5d5c7b3da47a4e, 0x8f5582cb16e23b05, 0x23ce04d64765e790, 0x8e5ad52b899d12aa) ERROR: LoadError: Some tests did not pass: 55 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/runtests.jl:4 Testing failed after 678.86s ERROR: LoadError: Package ACEfit errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:3010 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2859 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 1139.47s: package has test failures