Package evaluation of SimulationBasedInference on Julia 1.13.0-DEV.139 (5a3c7578c0*) started at 2025-03-06T09:07:25.065 ################################################################################ # Set-up # Set-up completed after 0.25s ################################################################################ # Installation # Installing SimulationBasedInference... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [78927d98] + SimulationBasedInference v0.1.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [99985d1d] + AbstractGPs v0.5.22 [80f14c24] + AbstractMCMC v5.6.0 [1520ce14] + AbstractTrees v0.4.5 ⌅ [7d9f7c33] + Accessors v0.1.36 [79e6a3ab] + Adapt v4.2.0 [a0f608ac] + AffineInvariantMCMC v1.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [6e4b80f9] + BenchmarkTools v1.6.0 [76274a88] + Bijectors v0.15.5 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [9e997f8a] + 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[8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.58s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 8679.4 ms ✓ Accessors 8416.7 ms ✓ RobustPmap 8582.4 ms ✓ Zygote → ZygoteColorsExt 7903.4 ms ✓ LogDensityProblemsAD → LogDensityProblemsADZygoteExt 82085.0 ms ✓ ComponentArrays → ComponentArraysZygoteExt 61237.4 ms ✓ EnsembleKalmanProcesses 2940.7 ms ✓ Accessors → AccessorsIntervalSetsExt 3143.0 ms ✓ Accessors → AccessorsStaticArraysExt 2056.6 ms ✓ Accessors → AccessorsStructArraysExt 4194.6 ms ✓ Accessors → AccessorsUnitfulExt 3033.1 ms ✓ BangBang 5730.6 ms ✓ SciMLOperators 8559.8 ms ✓ Roots 6231.6 ms ✓ SymbolicIndexingInterface 9184.3 ms ✓ AffineInvariantMCMC 2187.4 ms ✓ BangBang → BangBangStructArraysExt 3020.3 ms ✓ BangBang → BangBangStaticArraysExt 2567.5 ms ✓ BangBang → BangBangChainRulesCoreExt 2127.2 ms ✓ BangBang → BangBangTablesExt 4019.3 ms ✓ MicroCollections 2306.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2675.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 2667.1 ms ✓ Roots → RootsChainRulesCoreExt 3283.2 ms ✓ Roots → RootsForwardDiffExt 7009.3 ms ✓ RecursiveArrayTools 9220.0 ms ✓ Transducers 30458.3 ms ✓ Bijectors 3441.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 3723.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 89772.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsZygoteExt 2720.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStructArraysExt 3100.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 18630.2 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 41617.8 ms ✓ SciMLBase 2460.6 ms ✓ Transducers → TransducersAdaptExt 18717.5 ms ✓ AbstractMCMC 33540.2 ms ✓ Bijectors → BijectorsZygoteExt 5900.8 ms ✓ Bijectors → BijectorsForwardDiffExt 5774.6 ms ✓ Bijectors → BijectorsEnzymeCoreExt 4127.1 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 47036.3 ms ✓ SciMLBase → SciMLBaseZygoteExt 4415.1 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 70760.7 ms ✓ DiffEqBase 134264.5 ms ✓ MCMCChains 5513.2 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 8571.4 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 5319.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 90572.5 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 6882.6 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 198695.9 ms ? SimulationBasedInference 49 dependencies successfully precompiled in 1108 seconds. 429 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ SimulationBasedInference │ WARNING: Method definition adapt_structure(Any, OffsetArrays.OffsetArray{T, N, AA} where AA<:AbstractArray{T, N} where N where T) in module OffsetArraysAdaptExt at /home/pkgeval/.julia/packages/OffsetArrays/HLmxQ/ext/OffsetArraysAdaptExt.jl:9 overwritten in module OffsetArraysAdaptExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ComponentArrays → ComponentArraysZygoteExt │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ ┌ RecursiveArrayTools → RecursiveArrayToolsZygoteExt │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ Precompilation completed after 1114.48s ################################################################################ # Loading # Loading SimulationBasedInference... Precompiling packages... 5053.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 60763.0 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 3279.1 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 46180.1 ms ✓ SciMLBase → SciMLBaseZygoteExt 80834.5 ms ✓ ComponentArrays → ComponentArraysZygoteExt 20911.8 ms ✓ MCMCChains 79645.0 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5257.8 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 72410.3 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 7408.0 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt Info Given SimulationBasedInference was explicitly requested, output will be shown live  WARNING: Detected access to binding `Dimensions.X` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Detected access to binding `Dimensions.Y` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Detected access to binding `DimensionalData.DimArray` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Detected access to binding `Dimensions.Z` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Detected access to binding `DimensionalData.DimStack` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. 916901.9 ms ✓ SimulationBasedInference 11 dependencies successfully precompiled in 1308 seconds. 468 already precompiled. 2 dependencies had output during precompilation: ┌ SimulationBasedInference │ [Output was shown above] └ ┌ ComponentArrays → ComponentArraysZygoteExt │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ Loading completed after 1351.9s PkgEval succeeded after 2510.26s