Package evaluation to test Zarr on Julia 1.11.7 (58327cce5e*) started at 2025-10-29T00:27:42.836 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.92s ################################################################################ # Installation # Installing Zarr... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [0a941bbe] + Zarr v0.9.5 Updating `~/.julia/environments/v1.11/Manifest.toml` [fbe9abb3] + AWS v1.97.0 [1c724243] + AWSS3 v0.11.4 [dce04be8] + ArgCheck v2.5.0 [31f734f8] + ArrowTypes v2.3.0 [d1d4a3ce] + BitFlags v0.1.9 [a74b3585] + Blosc v0.7.3 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.1 [b342263e] + DateTimes64 v1.0.1 [3c3547ce] + DiskArrays v0.4.18 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [8f5d6c58] + EzXML v1.2.3 [48062228] + FilePathsBase v0.9.24 [bc5e4493] + GitHub v5.10.0 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [83e8ac13] + IniFile v0.5.1 [0c81fc1b] + InputBuffers v1.1.1 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [78c3b35d] + Mocking v0.8.1 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [20febd7b] + Retry v0.4.1 [7e506255] + ScopedValues v1.5.0 [777ac1f9] + SimpleBufferStream v1.2.0 [2133526b] + SodiumSeal v0.1.1 [2da68c74] + SymDict v0.3.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [228000da] + XMLDict v0.4.1 [0a941bbe] + Zarr v0.9.5 [49080126] + ZipArchives v2.5.1 [0b7ba130] + Blosc_jll v1.21.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [02c8fc9c] + XML2_jll v2.15.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [a9144af2] + libsodium_jll v1.0.21+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.63s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: Zarr Error: Missing source file for Base.PkgId(UUID("0a941bbe-ad1d-11e8-39d9-ab76183a1d99"), "Zarr" in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 23.19s ################################################################################ # Testing # Testing Zarr Status `/tmp/jl_5jWNUB/Project.toml` [992eb4ea] CondaPkg v0.2.33 ⌅ [682c06a0] JSON v0.21.4 [4281f0d9] Minio v0.2.2 [6099a3de] PythonCall v0.9.28 [0a941bbe] Zarr v0.9.5 `~/.julia/packages/Zarr/k8odF` [ade2ca70] Dates v1.11.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [6462fe0b] Sockets v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5jWNUB/Manifest.toml` [fbe9abb3] AWS v1.97.0 [1c724243] AWSS3 v0.11.4 [dce04be8] ArgCheck v2.5.0 [31f734f8] ArrowTypes v2.3.0 [d1d4a3ce] BitFlags v0.1.9 [a74b3585] Blosc v0.7.3 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [b342263e] DateTimes64 v1.0.1 [3c3547ce] DiskArrays v0.4.18 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [8f5d6c58] EzXML v1.2.3 [48062228] FilePathsBase v0.9.24 [bc5e4493] GitHub v5.10.0 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [83e8ac13] IniFile v0.5.1 [0c81fc1b] InputBuffers v1.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [8ac3fa9e] LRUCache v1.6.2 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [4281f0d9] Minio v0.2.2 [78c3b35d] Mocking v0.8.1 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [6099a3de] PythonCall v0.9.28 [20febd7b] Retry v0.4.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [777ac1f9] SimpleBufferStream v1.2.0 [2133526b] SodiumSeal v0.1.1 [856f2bd8] StructTypes v1.11.0 [2da68c74] SymDict v0.3.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [e17b2a0c] UnsafePointers v1.0.0 [228000da] XMLDict v0.4.1 [0a941bbe] Zarr v0.9.5 `~/.julia/packages/Zarr/k8odF` [49080126] ZipArchives v2.5.1 [0b7ba130] Blosc_jll v1.21.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [458c3c95] OpenSSL_jll v3.5.4+0 [02c8fc9c] XML2_jll v2.15.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [a9144af2] libsodium_jll v1.0.21+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 ⌅ [ad83bbfc] minio_jll v1.0.0+1 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling Zarr... Info Given Zarr was explicitly requested, output will be shown live  WARNING: redefinition of constant AWS.aws_config. This may fail, cause incorrect answers, or produce other errors. 26372.1 ms ✓ Zarr 1 dependency successfully precompiled in 31 seconds. 85 already precompiled. 1 dependency had output during precompilation: ┌ Zarr │ [Output was shown above] └ Precompiling PythonCall... 25528.1 ms ✓ PythonCall 1 dependency successfully precompiled in 26 seconds. 48 already precompiled. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/mkWc2/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Resolving changes + libstdcxx + libstdcxx-ng + openssl + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_5jWNUB/.CondaPkg ✔ Created /tmp/jl_5jWNUB/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_5jWNUB/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<14.0" │ libstdcxx-ng = ">=3.4,<14.0" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.9,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_5jWNUB/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling JSON3ArrowExt... 1307.6 ms ✓ JSON3 → JSON3ArrowExt 1 dependency successfully precompiled in 1 seconds. 12 already precompiled. CondaPkg Found dependencies: /tmp/jl_5jWNUB/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/mkWc2/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Resolving changes + zarr CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_5jWNUB/.CondaPkg ✔ Created /tmp/jl_5jWNUB/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_5jWNUB/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<14.0" │ libstdcxx-ng = ">=3.4,<14.0" │ zarr = "2.*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.9,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_5jWNUB/.CondaPkg/pixi.toml ✔ The default environment has been installed. Type : ZArray Data type : Vector{Float64} Shape : (2, 3) Chunk Shape : (2, 3) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 5, "lz4", 1) Filters : (Zarr.VLenArrayFilter{Float64}(),) Store type : Dictionary Storage No. bytes : unknown No. bytes stored : 108 Storage ratio : unknown Chunks initialized : 1/1 Precompiling Minio... 4440.2 ms ✓ Minio 1 dependency successfully precompiled in 5 seconds. 68 already precompiled. [ Info: Minio server started ┌ Warning: `global_aws_config(config::AbstractAWSConfig)` is deprecated, use `with_aws_config(config) do ... end` instead to temporarily modify the AWS configuration or `default_aws_config(config)` to set the AWS configuration outside the scope of any `with_aws_config` blocks. │ caller = macro expansion at storage.jl:162 [inlined] └ @ Core ~/.julia/packages/Zarr/k8odF/test/storage.jl:162 ┌ Warning: `global_aws_config()` is deprecated, use `current_aws_config()` instead. │ caller = #S3Store#33 at s3store.jl:13 [inlined] └ @ Core ~/.julia/packages/Zarr/k8odF/src/Storage/s3store.jl:13 ┌ Warning: `global_aws_config(config::AbstractAWSConfig)` is deprecated, use `with_aws_config(config) do ... end` instead to temporarily modify the AWS configuration or `default_aws_config(config)` to set the AWS configuration outside the scope of any `with_aws_config` blocks. │ caller = macro expansion at storage.jl:174 [inlined] └ @ Core ~/.julia/packages/Zarr/k8odF/test/storage.jl:174 ┌ Warning: `global_aws_config()` is deprecated, use `current_aws_config()` instead. │ caller = storefromstring(::Type{S3Store}, s::String, ::Bool) at s3store.jl:80 └ @ Zarr ~/.julia/packages/Zarr/k8odF/src/Storage/s3store.jl:80 [ Info: Listening on: 127.0.0.1:39579, thread id: 1 [ Info: Server on 127.0.0.1:39579 closing [ Info: Listening on: 127.0.0.1:45429, thread id: 1 [ Info: Server on 127.0.0.1:45429 closing Test Summary: | Pass Total Time Zarr | 2581 2581 15m34.0s Testing Zarr tests passed Testing completed after 1051.57s PkgEval succeeded after 1130.59s