Package evaluation to test StructuralIdentifiability on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T19:21:38.567 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.6s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [220ca800] + StructuralIdentifiability v0.5.17 Updating `~/.julia/environments/v1.11/Manifest.toml` [c3fe647b] + AbstractAlgebra v0.47.3 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.10.0 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [2edaba10] + Nemo v0.52.3 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.5 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [73480bc8] + RationalFunctionFields v0.2.2 [220ca800] + StructuralIdentifiability v0.5.17 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [781609d7] + GMP_jll v6.3.0+0 [3a97d323] + MPFR_jll v4.2.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 235.57s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_2VVUQS/Project.toml` [c3fe647b] AbstractAlgebra v0.47.3 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.10.0 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 [2edaba10] Nemo v0.52.3 [3e851597] ParamPunPam v0.5.5 ⌅ [aea7be01] PrecompileTools v1.2.1 [27ebfcd6] Primes v0.5.7 [73480bc8] RationalFunctionFields v0.2.2 [276daf66] SpecialFunctions v2.6.1 [220ca800] StructuralIdentifiability v0.5.17 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2VVUQS/Manifest.toml` [c3fe647b] AbstractAlgebra v0.47.3 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.10.0 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [2edaba10] Nemo v0.52.3 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.5 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [73480bc8] RationalFunctionFields v0.2.2 [431bcebd] SciMLPublic v1.0.0 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [220ca800] StructuralIdentifiability v0.5.17 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [781609d7] GMP_jll v6.3.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [3a97d323] MPFR_jll v4.2.1+0 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling TestExt... 3523.0 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 4 seconds. 16 already precompiled. Resolving package versions... Installed ModelingToolkit ─ v10.26.1 Updating `/tmp/jl_2VVUQS/Project.toml` ⌅ [861a8166] ↓ Combinatorics v1.0.3 ⇒ v1.0.2 [961ee093] + ModelingToolkit v10.26.1 Updating `/tmp/jl_2VVUQS/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.0 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] ↓ Combinatorics v1.0.3 ⇒ v1.0.2 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.9 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.122 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.4 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.15 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.26.1 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.13 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v2.0.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.6.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.124.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.3.1 [c0aeaf25] + SciMLOperators v1.9.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 [0c5d862f] + Symbolics v6.57.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_2VVUQS/Project.toml` [0c5d862f] + Symbolics v6.57.0 No Changes to `/tmp/jl_2VVUQS/Manifest.toml` Precompiling ModelingToolkit... 1884.2 ms ✓ PoissonRandom 1215.9 ms ✓ MaybeInplace 1642.4 ms ✓ Accessors → UnitfulExt 3870.7 ms ✓ SciMLOperators 3137.9 ms ✓ SymbolicIndexingInterface 1044.6 ms ✓ TruncatedStacktraces 10514.1 ms ✓ DynamicQuantities 843.3 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 1477.1 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 14749.9 ms ✓ CommonMark 1550.0 ms ✓ PreallocationTools 2870.4 ms ✓ ArnoldiMethod 1420.1 ms ✓ ResettableStacks 4268.4 ms ✓ DomainSets 1386.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 2390.8 ms ✓ Accessors → StaticArraysExt 2129.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 6459.6 ms ✓ Latexify 1063.5 ms ✓ CloseOpenIntervals 1382.1 ms ✓ LayoutPointers 7413.1 ms ✓ ForwardDiff 1412.5 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1161.0 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2111.8 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 4911.7 ms ✓ RecursiveArrayTools 3617.8 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1714.9 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 70625.6 ms ✓ JuliaFormatter 8448.1 ms ✓ Graphs 1394.1 ms ✓ DomainSets → DomainSetsRandomExt 85074.7 ms ✓ SymbolicUtils 1910.2 ms ✓ Latexify → SparseArraysExt 2551.7 ms ✓ Unitful → LatexifyExt 1595.1 ms ✓ StrideArraysCore 1756.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1087.8 ms ✓ FastPower → FastPowerForwardDiffExt 1378.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2071.4 ms ✓ Unitful → ForwardDiffExt 1183.4 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1562.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1549.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 21823.5 ms ✓ SciMLBase 4814.6 ms ✓ SymbolicLimits 1447.9 ms ✓ Polyester 2034.4 ms ✓ NLSolversBase 33374.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2799.4 ms ✓ SciMLBase → SciMLBaseMLStyleExt 4637.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3268.4 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 3644.4 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 3112.2 ms ✓ SCCNonlinearSolve 1703.2 ms ✓ FastBroadcast 4464.2 ms ✓ LineSearches 181705.0 ms ✓ Symbolics 8819.6 ms ✓ SciMLJacobianOperators 2074.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 5898.1 ms ✓ Optim 10085.7 ms ✓ Symbolics → SymbolicsForwardDiffExt 10778.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 9275.7 ms ✓ LineSearch 24718.8 ms ✓ NonlinearSolveBase 32127.1 ms ✓ DiffEqBase 78512.2 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 23198.1 ms ✓ LineSearch → LineSearchLineSearchesExt 19732.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 2763.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2247.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 2669.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 9604.6 ms ✓ BracketingNonlinearSolve 3196.1 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3734.6 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 3280.7 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 3344.6 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 8734.7 ms ✓ DiffEqCallbacks 9101.0 ms ✓ OrdinaryDiffEqCore 2849.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 97175.7 ms ✓ DiffEqNoiseProcess 16462.3 ms ✓ JumpProcesses 12077.9 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 38410.3 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 30937.5 ms ✓ SimpleNonlinearSolve 4286.8 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 43050.6 ms ✓ ImplicitDiscreteSolve 466768.8 ms ✓ ModelingToolkit 84 dependencies successfully precompiled in 1529 seconds. 190 already precompiled. 1 dependency had output during precompilation: ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ Precompiling GroebnerDynamicPolynomialsExt... 8162.7 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 1 dependency successfully precompiled in 9 seconds. 40 already precompiled. Precompiling SymbolicsNemoExt... Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((5//8)*(a^2)) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 116945.7 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 119 seconds. 162 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ Precompiling SymbolicsGroebnerExt... 15600.4 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 17 seconds. 167 already precompiled. Precompiling MTKDeepDiffsExt... 31230.6 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 33 seconds. 275 already precompiled. Precompiling ModelingToolkitSIExt... 46239.6 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 49 seconds. 293 already precompiled. [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/erhUr/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.350679 seconds (900.75 k allocations: 45.556 MiB, 2.73% gc time, 99.56% compilation time) 0.001935 seconds (7.37 k allocations: 320.422 KiB) 0.001957 seconds (10.80 k allocations: 485.023 KiB) 0.002174 seconds (10.76 k allocations: 480.555 KiB) 0.002755 seconds (14.53 k allocations: 636.461 KiB) 0.001670 seconds (7.94 k allocations: 361.438 KiB) 0.001019 seconds (7.45 k allocations: 301.469 KiB) 15.403274 seconds (5.75 M allocations: 293.095 MiB, 0.50% gc time, 99.78% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.362491 seconds (99.17 k allocations: 5.136 MiB, 98.40% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.013170 seconds (9.84 k allocations: 541.250 KiB, 89.92% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y1(t)_2 => -y1(t)_0 + y1(t)_2, y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1) [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003976891 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 6.124037536 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 0.068938326 seconds [ Info: Global identifiability assessed in 48.941359491 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.002303517 seconds [ Info: No parameters, so Wronskian computation is not needed [ Info: Global identifiability assessed in 0.907515225 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Global identifiability assessed in 5.1149e-5 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.040757392 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.390308947 seconds [ Info: Dimensions of the Wronskians [5] [ Info: Ranks of the Wronskians computed in 2.864e-5 seconds [ Info: Simplifying generating set. Simplification level: standard ⌜ # Computing specializations.. Time: 0:00:14 ✓ # Computing specializations.. Time: 0:00:16 [ Info: Search for polynomial generators concluded in 12.469741502 [ Info: Selecting generators in 0.013551848 [ Info: Inclusion checked with probability 0.9955 in 0.066084554 seconds [ Info: Global identifiability assessed in 111.592693394 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 1.915560832 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 1.888870682 seconds [ Info: Dimensions of the Wronskians [676] [ Info: Ranks of the Wronskians computed in 0.123927609 seconds [ Info: Global identifiability assessed in 43.129766845 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.014437069 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.030526412 seconds [ Info: Dimensions of the Wronskians [69] [ Info: Ranks of the Wronskians computed in 0.000285587 seconds [ Info: Global identifiability assessed in 0.074078606 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Note: the input model has nontrivial submodels. If the computation for the full model will be too heavy, you may want to try to first analyze one of the submodels. They can be produced using function `find_submodels` [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 7.581712014 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.002917961 seconds [ Info: Dimensions of the Wronskians [2, 3, 2] [ Info: Ranks of the Wronskians computed in 2.221e-5 seconds [ Info: Simplifying generating set. Simplification level: standard [ Info: Search for polynomial generators concluded in 0.90248035 [ Info: Selecting generators in 0.000409906 [ Info: Inclusion checked with probability 0.9955 in 0.003226239 seconds [ Info: Global identifiability assessed in 9.913241718 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.002236428 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.001876212 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 2.247e-5 seconds [ Info: Global identifiability assessed in 0.006737905 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.002667204 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.002107519 seconds [ Info: Dimensions of the Wronskians [4] [ Info: Ranks of the Wronskians computed in 2.0719e-5 seconds [ Info: Global identifiability assessed in 0.007880344 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.005282629 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.004330188 seconds [ Info: Dimensions of the Wronskians [6] [ Info: Ranks of the Wronskians computed in 2.1939e-5 seconds [ Info: Simplifying generating set. Simplification level: standard ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 35 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm11Instruction5cloneEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) unknown function (ip: 0x17) unknown function (ip: 0x1e89c947) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [ Info: Search for polynomial generators concluded in 1.709400664 [ Info: Selecting generators in 0.018006344 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x70df4dce5ef2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x70df4dcde1fd) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x70df4dcd277a) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x70df4dcd247d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x70df4dcd1e5d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x70df4dcce2f6) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2835 include at ./Base.jl:562 jfptr_include_47022.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 exec_options at ./client.jl:316 _start at ./client.jl:524 jfptr__start_73678.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70df4f19a249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000070397abfc010 Total snapshots: 121. Utilization: 100% ╎103 @Base/client.jl:524; _start() ╎ 103 @Base/client.jl:289; exec_options(opts::Base.JLOptions) ╎ 103 @Base/boot.jl:430; eval ╎ 103 @Base/sysimg.jl:38; include(fname::String) ╎ 103 @Base/loading.jl:2835; _include(mapexpr::Function, mod::Module, _pat… ╎ 103 @Base/loading.jl:2775; include_string(mapexpr::typeof(identity), mo… ╎ ╎ 103 @Base/boot.jl:430; eval ╎ ╎ 103 …ity/test/runtests.jl:150; top-level scope ╎ ╎ 103 @Base/timing.jl:581; macro expansion ╎ ╎ 103 …ty/test/runtests.jl:151; macro expansion ╎ ╎ 103 @Test/src/Test.jl:1709; macro expansion ╎ ╎ ╎ 103 …y/test/runtests.jl:153; macro expansion ╎ ╎ ╎ 103 @Base/sysimg.jl:38; include(fname::String) ╎ ╎ ╎ 103 @Base/loading.jl:2835; _include(mapexpr::Function, mod::Mod… ╎ ╎ ╎ 103 @Base/loading.jl:2775; include_string(mapexpr::typeof(iden… ╎ ╎ ╎ 103 @Base/boot.jl:430; eval ╎ ╎ ╎ ╎ 103 …entifiability.jl:110; kwcall(::@NamedTuple{funcs_to_che… ╎ ╎ ╎ ╎ 103 …entifiability.jl:119; assess_identifiability(ode::ODE{… ╎ ╎ ╎ ╎ 103 …ging/logging.jl:635; with_logger ╎ ╎ ╎ ╎ 103 …ging/logging.jl:524; with_logstate(f::StructuralIden… ╎ ╎ ╎ ╎ 103 …ntifiability.jl:121; (::StructuralIdentifiability.v… ╎ ╎ ╎ ╎ ╎ 103 …tifiability.jl:140; _assess_identifiability ╎ ╎ ╎ ╎ ╎ 103 …tifiability.jl:174; _assess_identifiability(ode::… ╎ ╎ ╎ ╎ ╎ 103 …ase/timing.jl:421; macro expansion ╎ ╎ ╎ ╎ ╎ 103 …ifiability.jl:286; assess_global_identifiability ╎ ╎ ╎ ╎ ╎ 103 …ifiability.jl:286; assess_global_identifiabili… ╎ ╎ ╎ ╎ ╎ ╎ 103 …fiability.jl:178; check_identifiability ╎ ╎ ╎ ╎ ╎ ╎ 103 …fiability.jl:178; check_identifiability(ode:… ╎ ╎ ╎ ╎ ╎ ╎ 103 …fiability.jl:86; initial_identifiable_funct… ╎ ╎ ╎ ╎ ╎ ╎ 103 …iability.jl:86; initial_identifiable_funct… ╎ ╎ ╎ ╎ ╎ ╎ 103 …rc/Field.jl:720; kwcall(::@NamedTuple{pro… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 103 …rc/Field.jl:720; simplified_generating_s… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 103 …malforms.jl:98; kwcall(::@NamedTuple{se… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 103 …malforms.jl:98; polynomial_generators(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 103 …er/state.jl:127; rational_reconstruct… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 103 …rc/MPoly.jl:1400; MPolyRing ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 103 …ic/MPoly.jl:4105; (::AbstractAlgebr… 83╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 84 …ic/MPoly.jl:315; sort_terms!(a::Ab… 8╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 19 …ic/MPoly.jl:317; sort_terms!(a::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 11 …ypeinfer.jl:1135; typeinf_ext_top… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 11 …ypeinfer.jl:1139; typeinf_ext_to… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 11 …ypeinfer.jl:1101; typeinf_ext(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 11 …ypeinfer.jl:215; typeinf(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 10 …ypeinfer.jl:244; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 10 …retation.jl:3413; typeinf_nocyc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 10 …retation.jl:3331; typeinf_local… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 5 …retation.jl:3044; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 5 …retation.jl:2752; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 5 …retation.jl:2454; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 5 …retation.jl:2438; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 5 …retation.jl:2423; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 5 …retation.jl:2275; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 5 …retation.jl:2282; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 3 …retation.jl:2166; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 3 …r/tfuncs.jl:2975; return_type_t… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 3 …retation.jl:2282; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 3 …retation.jl:2200; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 …retation.jl:25; abstract_call_g… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 …retation.jl:312; find_matching_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 …hodtable.jl:100; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 …hodtable.jl:103; findall(sig::T… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 …hodtable.jl:68; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 1 …hodtable.jl:68; #findall#311 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 1 …hodtable.jl:95; _findall 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 …flection.jl:1182; _methods_by_f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 2 …retation.jl:102; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 2 …retation.jl:660; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 2 …ypeinfer.jl:923; typeinf_edge(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 2 …ypeinfer.jl:215; typeinf(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 2 …ypeinfer.jl:244; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 2 …retation.jl:3413; typeinf_nocyc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 2 …retation.jl:3331; typeinf_local… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 2 …retation.jl:3044; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 2 …retation.jl:2752; 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_methods_by_f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 …retation.jl:102; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 …retation.jl:660; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 …ypeinfer.jl:923; typeinf_edge(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 …ypeinfer.jl:215; typeinf(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 …ypeinfer.jl:244; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 …retation.jl:3413; typeinf_nocyc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 …retation.jl:3331; typeinf_local… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 …retation.jl:3068; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 1 …retation.jl:2752; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 1 …retation.jl:2454; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 …retation.jl:2438; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 1 …retation.jl:2423; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +25 1 …retation.jl:2275; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +26 1 …retation.jl:2282; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +27 1 …retation.jl:2200; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +28 1 …retation.jl:25; abstract_call_g… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +29 1 …retation.jl:312; find_matching_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +30 1 …hodtable.jl:100; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +31 1 …hodtable.jl:103; findall(sig::T… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +32 1 …hodtable.jl:68; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +33 1 …hodtable.jl:68; #findall#311 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +34 1 …hodtable.jl:95; _findall 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +35 1 …flection.jl:1182; _methods_by_f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 5 …retation.jl:3068; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 5 …retation.jl:2752; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 5 …retation.jl:2454; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 5 …retation.jl:2438; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 5 …retation.jl:2423; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 5 …retation.jl:2275; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 5 …retation.jl:2282; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 5 …retation.jl:2200; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 2 …retation.jl:25; abstract_call_g… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 2 …retation.jl:312; find_matching_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 2 …hodtable.jl:100; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 2 …hodtable.jl:103; findall(sig::T… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 2 …hodtable.jl:68; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 2 …hodtable.jl:68; #findall#311 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 2 …hodtable.jl:95; _findall 2╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 2 …flection.jl:1182; _methods_by_f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 3 …retation.jl:102; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 3 …retation.jl:660; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 3 …ypeinfer.jl:923; typeinf_edge(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 3 …ypeinfer.jl:215; typeinf(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 2 …ypeinfer.jl:244; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 2 …retation.jl:3413; typeinf_nocyc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 2 …retation.jl:3331; typeinf_local… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 2 …retation.jl:3068; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 2 …retation.jl:2752; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 2 …retation.jl:2454; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 2 …retation.jl:2438; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 2 …retation.jl:2423; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +25 2 …retation.jl:2275; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +26 2 …retation.jl:2282; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +27 2 …retation.jl:2200; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +28 1 …retation.jl:25; abstract_call_g… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +29 1 …retation.jl:312; find_matching_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +30 1 …hodtable.jl:100; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +31 1 …hodtable.jl:103; findall(sig::T… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +32 1 …hodtable.jl:68; findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +33 1 …hodtable.jl:68; #findall#311 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +34 1 …hodtable.jl:95; _findall 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +35 1 …flection.jl:1182; _methods_by_f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +28 1 …retation.jl:102; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +29 1 …retation.jl:660; abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +30 1 …ypeinfer.jl:923; typeinf_edge(i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +31 1 …ypeinfer.jl:215; typeinf(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +32 1 …ypeinfer.jl:244; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +33 1 …retation.jl:3413; typeinf_nocyc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +34 1 …retation.jl:3331; typeinf_local… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +35 1 …retation.jl:3068; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +36 1 …retation.jl:2752; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +37 1 …retation.jl:2454; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +38 1 …retation.jl:2438; abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +39 1 …retation.jl:2423; abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +40 1 …retation.jl:2275; 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abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +59 1 …retation.jl:1820; abstract_call… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +60 1 …r/tfuncs.jl:2744; builtin_tfunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 …ypeinfer.jl:249; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 …ypeinfer.jl:269; finish_nocycle… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 …ypeinfer.jl:435; cache_result!(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 …ypeinfer.jl:363; Core.CodeInsta… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 1 …ypeinfer.jl:408; transform_resu… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 1 …ypeinfer.jl:394; maybe_compress… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 …ypeinfer.jl:249; _typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 …ypeinfer.jl:265; finish_nocycle… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 …optimize.jl:983; optimize(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 …optimize.jl:1009; run_passes_ip… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 …optimize.jl:994; run_passes_ipo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 …inlining.jl:78; ssa_inlining_pa… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 …inlining.jl:1678; assemble_inli… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 …inlining.jl:1424; handle_call! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 …inlining.jl:1394; compute_inlin… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 …inlining.jl:1318; handle_any_co… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 …inlining.jl:1330; handle_any_co… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 …inlining.jl:1431; handle_match! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 …inlining.jl:1442; handle_match!… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 …inlining.jl:950; analyze_method! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 …inlining.jl:983; analyze_method… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 …inlining.jl:874; resolve_todo ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 …inlining.jl:907; resolve_todo(m… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 …inlining.jl:994; retrieve_ir_fo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 …r/legacy.jl:14; inflate_ir! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 1 …r/legacy.jl:18; inflate_ir!(ci:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 1 …ssair/ir.jl:146; compute_basic_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 …se/array.jl:1261; push! 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 1 …se/array.jl:1112; _growend! [ Info: Inclusion checked with probability 0.9955 in 15.452351427 seconds [ Info: Global identifiability assessed in 19.546773222 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.028087925 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.009338099 seconds [ Info: Dimensions of the Wronskians [5, 2] [ Info: Ranks of the Wronskians computed in 4.641e-5 seconds [ Info: Simplifying generating set. Simplification level: standard [ Info: Search for polynomial generators concluded in 0.022228262 [ Info: Selecting generators in 0.012857185 [ Info: Inclusion checked with probability 0.9955 in 0.010501238 seconds [ Info: Global identifiability assessed in 0.144159791 seconds [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000070df423fc010 Total snapshots: 44. Utilization: 0% ╎44 @Base/client.jl:524; _start() ╎ 44 @Base/client.jl:316; exec_options(opts::Base.JLOptions) ╎ 44 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 44 @Base/loading.jl:2835; _include(mapexpr::Function, mod::Module, _path:… ╎ 44 @Base/loading.jl:2775; include_string(mapexpr::typeof(identity), mod:… ╎ 44 @Base/boot.jl:430; eval ╎ ╎ 44 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 44 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 44 @Pkg/src/API.jl:147; test ╎ ╎ 44 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 44 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 44 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 44 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 44 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 44 …src/Operations.jl:2011; test ╎ ╎ ╎ 44 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 44 …rc/Operations.jl:1841; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 44 …rc/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 44 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 44 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 44 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 44 …/Operations.jl:1902; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 44 …/Operations.jl:1793; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 44 …Operations.jl:1935; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 44 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 44 …Operations.jl:2086; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 44 …perations.jl:2146; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 44 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 44 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 44 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 44 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 44 …ase/task.jl:1021; wait() 43╎ ╎ ╎ ╎ ╎ ╎ ╎ 44 …ase/task.jl:1012; poptask(W::Base.Intrus… [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: Θ [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: V_m, c, k01, k_m [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b, c [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: k1, k2, k3, k4 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: β1, β2, β3, λ1, λ2, λ3 [ Info: Inputs: u1, u2, u3 [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a1, a2, b1, b2 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a1, a2, b1, b2 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: p1, p2, p3, p4 [ Info: Inputs: [ Info: Outputs: y [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [35] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/identifiable_functions.jl:130 poptask at ./task.jl:1012 wait at ./task.jl:1021 _ZNK12_GLOBAL__N_110MachineCSE21hasLivePhysRegDefUsesEPKN4llvm12MachineInstrEPKNS1_17MachineBasicBlockERNS1_8SmallSetINS1_10MCRegisterELj8ESt4lessIS9_EEERNS1_11SmallVectorISt4pairIjjELj2EEERb.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 _ZN12_GLOBAL__N_110MachineCSE15ProcessBlockCSEEPN4llvm17MachineBasicBlockE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) profile_printing_listener at ./Base.jl:582 #1192 at ./Base.jl:622 _ZN12_GLOBAL__N_110MachineCSE10PerformCSEEPN4llvm15DomTreeNodeBaseINS1_17MachineBasicBlockEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) jfptr_YY.1192_76252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 21525542 (Pool: 21524767; Big: 775); GC: 22 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") _ZN12_GLOBAL__N_110MachineCSE20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) error at ./error.jl:35 #schedule#763 at ./task.jl:884 _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) operator() at /source/src/jitlayers.cpp:1388 _ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) jfptr_uv_writecb_task_67129.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) jlcapi_uv_writecb_task_67593.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2538 [inlined] jl_compile_method_internal at /source/src/gf.c:2425 _jl_invoke at /source/src/gf.c:2943 [inlined] ijl_apply_generic at /source/src/gf.c:3128 with_logger at ./logging/logging.jl:635 unknown function (ip: 0x70393c0fea36) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 wait at ./task.jl:1021 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 uv_write at ./stream.jl:1081 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 _include at ./loading.jl:2835 include at ./sysimg.jl:38 unknown function (ip: 0x703986500082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:153 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:151 [inlined] macro expansion at ./timing.jl:581 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:150 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 jfptr_print_48479.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x70df4dcf3026) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _atexit at ./initdefs.jl:454 _include at ./loading.jl:2835 include at ./sysimg.jl:38 unknown function (ip: 0x703986500082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jfptr__atexit_69637.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:289 _start at ./client.jl:524 jfptr__start_73678.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x703987b3e249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) Allocations: 246213335 (Pool: 246206569; Big: 6766); GC: 118 PkgEval terminated after 2771.73s: test duration exceeded the time limit