Package evaluation to test Stheno on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T22:05:16.997 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.73s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 54.14s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_jzG9Wi/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jzG9Wi/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.2 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling Stheno... 12763.2 ms ✓ Stheno 1 dependency successfully precompiled in 15 seconds. 79 already precompiled. Precompiling Documenter... 12205.9 ms ✓ Documenter 1 dependency successfully precompiled in 12 seconds. 26 already precompiled. Precompiling FiniteDifferences... 2755.8 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling Zygote... 12237.2 ms ✓ ChainRules 7770.4 ms ✓ KernelAbstractions 2313.2 ms ✓ KernelAbstractions → SparseArraysExt 2278.6 ms ✓ KernelAbstractions → LinearAlgebraExt 1881.1 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 12332.8 ms ✓ GPUArrays 72847.0 ms ✓ Zygote 7 dependencies successfully precompiled in 113 seconds. 96 already precompiled. Precompiling ForwardDiffStaticArraysExt... 2253.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1 dependency successfully precompiled in 3 seconds. 22 already precompiled. Precompiling ZygoteDistancesExt... 6490.9 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 8 seconds. 107 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 27m59.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1692s / 99.2% 25.6GiB / 99.7% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 1152s 68.6% 1152s 17.6GiB 69.0% 17.6GiB addition 1 665s 39.6% 665s 10.8GiB 42.2% 10.8GiB Standardised Tests (correlated sum) 1 266s 15.9% 266s 6.00GiB 23.5% 6.00GiB adj_ad 9 14.1s 0.8% 1.57s 381MiB 1.5% 42.3MiB adj_fd 9 4.27s 0.3% 475ms 110MiB 0.4% 12.3MiB Correlated GPs 1 209s 12.5% 209s 247MiB 0.9% 247MiB Consistency Tests 1 81.5s 4.9% 81.5s 106MiB 0.4% 106MiB Standardised Tests (independent sum) 1 186s 11.1% 186s 4.47GiB 17.5% 4.47GiB adj_ad 9 24.8s 1.5% 2.76s 512MiB 2.0% 56.9MiB adj_fd 9 6.41s 0.4% 712ms 84.0MiB 0.3% 9.33MiB Verify mean / kernel numerically 1 3.31s 0.2% 3.31s 39.0MiB 0.1% 39.0MiB Consistency Tests 1 1.66s 0.1% 1.66s 14.3MiB 0.1% 14.3MiB product 1 239s 14.2% 239s 3.13GiB 12.3% 3.13GiB multiply by function 1 169s 10.1% 169s 1.75GiB 6.9% 1.75GiB Diff Tests 1 69.5s 4.1% 69.5s 1.28GiB 5.0% 1.28GiB adj_ad 9 23.5s 1.4% 2.61s 756MiB 2.9% 83.9MiB adj_fd 9 6.20s 0.4% 689ms 78.5MiB 0.3% 8.72MiB Consistency Tests 1 12.7s 0.8% 12.7s 86.6MiB 0.3% 86.6MiB multiply by constant 1 70.0s 4.2% 70.0s 1.38GiB 5.4% 1.38GiB Diff Tests 1 47.3s 2.8% 47.3s 1.32GiB 5.2% 1.32GiB adj_ad 9 12.9s 0.8% 1.43s 202MiB 0.8% 22.4MiB adj_fd 9 5.26s 0.3% 584ms 78.2MiB 0.3% 8.69MiB Consistency Tests 1 5.36s 0.3% 5.36s 21.3MiB 0.1% 21.3MiB GP mul errors 1 12.7ms 0.0% 12.7ms 36.3KiB 0.0% 36.3KiB compose 1 70.4s 4.2% 70.4s 1.79GiB 7.0% 1.79GiB general 1 47.7s 2.8% 47.7s 1.25GiB 4.9% 1.25GiB Diff Tests 1 41.1s 2.4% 41.1s 1.19GiB 4.7% 1.19GiB adj_ad 9 10.4s 0.6% 1.16s 593MiB 2.3% 65.9MiB adj_fd 9 5.07s 0.3% 563ms 89.0MiB 0.3% 9.89MiB Consistency Tests 1 4.98s 0.3% 4.98s 39.4MiB 0.2% 39.4MiB Stretch 1 14.4s 0.9% 14.4s 458MiB 1.8% 458MiB scalar stretch 1 13.8s 0.8% 13.8s 447MiB 1.7% 447MiB scalar input 1 12.5s 0.7% 12.5s 443MiB 1.7% 443MiB adj_fd 9 4.06s 0.2% 452ms 75.6MiB 0.3% 8.40MiB adj_ad 9 813ms 0.0% 90.4ms 31.0MiB 0.1% 3.45MiB vector input 1 1.28s 0.1% 1.28s 3.33MiB 0.0% 3.33MiB Vector stretch 1 496ms 0.0% 496ms 8.07MiB 0.0% 8.07MiB Matrix stretch 1 121ms 0.0% 121ms 2.85MiB 0.0% 2.85MiB Shift 1 5.42s 0.3% 5.42s 35.9MiB 0.1% 35.9MiB Shift{Vector{Float64}} 1 3.37s 0.2% 3.37s 12.8MiB 0.0% 12.8MiB Shift{Float64} 1 2.05s 0.1% 2.05s 23.1MiB 0.1% 23.1MiB Select 1 1.77s 0.1% 1.77s 29.7MiB 0.1% 29.7MiB evaluation 1 782ms 0.0% 782ms 18.6MiB 0.1% 18.6MiB idx isa Vector 1 571ms 0.0% 571ms 7.03MiB 0.0% 7.03MiB idx isa Integer 1 421ms 0.0% 421ms 4.07MiB 0.0% 4.07MiB Periodic 1 1.18s 0.1% 1.18s 28.2MiB 0.1% 28.2MiB cross 1 31.0s 1.8% 31.0s 1.19GiB 4.7% 1.19GiB block arrays 1 18.3s 1.1% 18.3s 810MiB 3.1% 810MiB Stheno._collect ∘ _mortar 1 14.9s 0.9% 14.9s 677MiB 2.6% 677MiB BlockVector 1 7.84s 0.5% 7.84s 341MiB 1.3% 341MiB adj_ad 1 1.32s 0.1% 1.32s 82.2MiB 0.3% 82.2MiB adj_fd 1 735ms 0.0% 735ms 13.0MiB 0.0% 13.0MiB BlockMatrix 1 7.02s 0.4% 7.02s 336MiB 1.3% 336MiB adj_fd 1 1.31s 0.1% 1.31s 135MiB 0.5% 135MiB adj_ad 1 695ms 0.0% 695ms 33.3MiB 0.1% 33.3MiB fdm stuff 1 3.41s 0.2% 3.41s 133MiB 0.5% 133MiB Correctness tests 1 8.66s 0.5% 8.66s 355MiB 1.4% 355MiB Standardised Tests 1 4.10s 0.2% 4.10s 51.2MiB 0.2% 51.2MiB gp 1 236s 14.1% 236s 4.20GiB 16.5% 4.20GiB adj_ad 2 34.1s 2.0% 17.0s 739MiB 2.8% 369MiB sparse gp 1 25.4s 1.5% 25.4s 697MiB 2.7% 697MiB SparseFiniteGP inference 1 17.9s 1.1% 17.9s 521MiB 2.0% 521MiB SparseFiniteGP methods 1 6.93s 0.4% 6.93s 169MiB 0.6% 169MiB SparseFiniteGP Constructors 1 387ms 0.0% 387ms 3.73MiB 0.0% 3.73MiB gp 1 22.0s 1.3% 22.0s 236MiB 0.9% 236MiB GP 1 21.7s 1.3% 21.7s 234MiB 0.9% 234MiB independent GPs 1 320ms 0.0% 320ms 2.42MiB 0.0% 2.42MiB wrapped AbstractGP 1 13.4ms 0.0% 13.4ms 261KiB 0.0% 261KiB adj_fd 2 5.53s 0.3% 2.76s 111MiB 0.4% 55.3MiB derived_gp 1 186μs 0.0% 186μs 1.61KiB 0.0% 1.61KiB gaussian_process_probabilistic_programme 1 207s 12.3% 207s 2.10GiB 8.2% 2.10GiB External Consistency 1 53.0s 3.2% 53.0s 82.9MiB 0.3% 82.9MiB Zygote 1 38.3s 2.3% 38.3s 843MiB 3.2% 843MiB nested gppp 1 14.8s 0.9% 14.8s 82.1MiB 0.3% 82.1MiB split 1 856ms 0.1% 856ms 11.0MiB 0.0% 11.0MiB gppp macro 1 56.2ms 0.0% 56.2ms 514KiB 0.0% 514KiB doctests 1 73.7s 4.4% 73.7s 1.34GiB 5.3% 1.34GiB BlockData 1 9.77s 0.6% 9.77s 265MiB 1.0% 265MiB vcat(::GPPPInput...) 1 2.29s 0.1% 2.29s 88.9MiB 0.3% 88.9MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1862.83s PkgEval succeeded after 1952.02s