Package evaluation to test Relief on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T23:35:04.648 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.59s ################################################################################ # Installation # Installing Relief... Resolving package versions... Installed Conda ── v1.10.3 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.11/Project.toml` [e59a39ae] + Relief v0.2.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [682c06a0] + JSON v1.2.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [438e738f] + PyCall v1.96.4 [189a3867] + Reexport v1.2.2 [e59a39ae] + Relief v0.2.0 ⌅ [3646fa90] + ScikitLearn v0.6.6 [6e75b9c4] + ScikitLearnBase v0.5.0 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [892a3eda] + StringManipulation v0.4.1 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 76.97s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 41.62s ################################################################################ # Testing # Testing Relief Status `/tmp/jl_z6e25d/Project.toml` [438e738f] PyCall v1.96.4 [e59a39ae] Relief v0.2.0 ⌅ [3646fa90] ScikitLearn v0.6.6 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_z6e25d/Manifest.toml` [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [682c06a0] JSON v1.2.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [438e738f] PyCall v1.96.4 [189a3867] Reexport v1.2.2 [e59a39ae] Relief v0.2.0 ⌅ [3646fa90] ScikitLearn v0.6.6 [6e75b9c4] ScikitLearnBase v0.5.0 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [892a3eda] StringManipulation v0.4.1 [ec057cc2] StructUtils v2.5.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3a884ed6] UnPack v1.0.2 [81def892] VersionParsing v1.3.0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Installing sklearn.naive_bayes via the Conda scikit-learn package... [ Info: Running `conda install -q -y scikit-learn` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scikit-learn The following packages will be downloaded: package | build ---------------------------|----------------- joblib-1.5.2 | pyhd8ed1ab_0 219 KB conda-forge scikit-learn-1.7.2 | py312h4f0b9e3_0 9.2 MB conda-forge scipy-1.16.3 | py312h7a1785b_0 16.3 MB conda-forge threadpoolctl-3.6.0 | pyhecae5ae_0 23 KB conda-forge ------------------------------------------------------------ Total: 25.8 MB The following NEW packages will be INSTALLED: joblib conda-forge/noarch::joblib-1.5.2-pyhd8ed1ab_0 scikit-learn conda-forge/linux-64::scikit-learn-1.7.2-py312h4f0b9e3_0 scipy conda-forge/linux-64::scipy-1.16.3-py312h7a1785b_0 threadpoolctl conda-forge/noarch::threadpoolctl-3.6.0-pyhecae5ae_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done ERROR: LoadError: InitError: PyError (PyImport_ImportModule The Python package sklearn.naive_bayes could not be imported by pyimport. Usually this means that you did not install sklearn.naive_bayes in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the sklearn.naive_bayes module, you can use `pyimport_conda("sklearn.naive_bayes", PKG)`, where PKG is the Anaconda package that contains the module sklearn.naive_bayes, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ImportError("/opt/julia/bin/../lib/julia/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_distance_pybind.cpython-312-x86_64-linux-gnu.so)") File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/__init__.py", line 73, in from .base import clone # noqa: E402 ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/base.py", line 19, in from .utils._metadata_requests import _MetadataRequester, _routing_enabled File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/utils/__init__.py", line 9, in from ._chunking import gen_batches, gen_even_slices File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/utils/_chunking.py", line 11, in from ._param_validation import Interval, validate_params File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/utils/_param_validation.py", line 17, in from .validation import _is_arraylike_not_scalar File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/utils/validation.py", line 21, in from ..utils._array_api import _asarray_with_order, _is_numpy_namespace, get_namespace File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/utils/_array_api.py", line 20, in from .fixes import parse_version File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/sklearn/utils/fixes.py", line 16, in import scipy.stats File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/stats/__init__.py", line 626, in from ._stats_py import * File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/stats/_stats_py.py", line 40, in from scipy.spatial import distance_matrix File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/__init__.py", line 116, in from ._geometric_slerp import geometric_slerp File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_geometric_slerp.py", line 7, in from scipy.spatial.distance import euclidean File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/distance.py", line 122, in from . import _hausdorff, _distance_pybind, _distance_wrap Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:722 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ Relief ~/.julia/packages/Relief/Q2VqW/src/ecrelieff.jl:7 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [8] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [10] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [11] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [12] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [13] invoke_in_world @ ./essentials.jl:1086 [inlined] [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [15] macro expansion @ ./loading.jl:2314 [inlined] [16] macro expansion @ ./lock.jl:273 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [18] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [19] invoke_in_world @ ./essentials.jl:1086 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [21] include(fname::String) @ Main ./sysimg.jl:38 [22] top-level scope @ none:6 during initialization of module Relief in expression starting at /home/pkgeval/.julia/packages/Relief/Q2VqW/test/runtests.jl:1 caused by: PyError (PyImport_ImportModule The Python package sklearn.naive_bayes could not be imported by pyimport. Usually this means that you did not install sklearn.naive_bayes in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the sklearn.naive_bayes module, you can use `pyimport_conda("sklearn.naive_bayes", PKG)`, where PKG is the Anaconda package that contains the module sklearn.naive_bayes, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ModuleNotFoundError("No module named 'sklearn'") Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:716 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ Relief ~/.julia/packages/Relief/Q2VqW/src/ecrelieff.jl:7 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [8] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [10] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [11] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [12] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [13] invoke_in_world @ ./essentials.jl:1086 [inlined] [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [15] macro expansion @ ./loading.jl:2314 [inlined] [16] macro expansion @ ./lock.jl:273 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [18] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [19] invoke_in_world @ ./essentials.jl:1086 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [21] include(fname::String) @ Main ./sysimg.jl:38 [22] top-level scope @ none:6 Testing failed after 39.86s ERROR: LoadError: Package Relief errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 204.73s: package tests unexpectedly errored