Package evaluation to test Pfam on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T17:42:05.271


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.76s


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# Installation
#

Installing Pfam...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [275cd14a] + Pfam v2.2.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [692b3bcd] + JLLWrappers v1.7.1
  [275cd14a] + Pfam v2.2.0
  [21216c6a] + Preferences v1.5.0
  [92933f4c] + ProgressMeter v1.11.0
  [be1be57a] + Gzip_jll v1.14.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850ede] + nghttp2_jll v1.59.0+0

Installation completed after 4.74s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 17.87s


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# Testing
#

     Testing Pfam
      Status `/tmp/jl_SR8kMU/Project.toml`
⌃ [4c88cf16] Aqua v0.7.3
  [275cd14a] Pfam v2.2.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_SR8kMU/Manifest.toml`
⌃ [4c88cf16] Aqua v0.7.3
⌃ [34da2185] Compat v4.10.0
  [692b3bcd] JLLWrappers v1.7.1
  [275cd14a] Pfam v2.2.0
  [21216c6a] Preferences v1.5.0
  [92933f4c] ProgressMeter v1.11.0
  [be1be57a] Gzip_jll v1.14.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [83775a58] Zlib_jll v1.2.13+1
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ have new versions available and may be upgradable.
     Testing Running tests...
Precompiling Aqua...
   1156.5 ms  ✓ Compat
   5529.0 ms  ✓ Aqua
  2 dependencies successfully precompiled in 7 seconds. 26 already precompiled.
Skipping Base.active_repl
Skipping Base.active_repl_backend
Skipping Base.cwstring
Test Summary:                                | Pass  Total   Time
aqua                                         |    9      9  29.8s
  Method ambiguity                           |    1      1   8.2s
  Unbound type parameters                    |    1      1   0.2s
  Undefined exports                          |    1      1   0.1s
  Compare Project.toml and test/Project.toml |    1      1   0.6s
  Stale dependencies                         |    1      1   4.6s
  Compat bounds                              |    1      1   1.9s
  Project.toml formatting                    |    2      2   1.6s
  Piracy                                     |    1      1   0.3s
[ Info: PFAM directory /tmp/jl_ZTdiqg set.
[ Info: Pfam version 35.0 set.
[ Info: Downloading to /tmp/jl_ZTdiqg/35.0/pdbmap ...

Downloaded (bytes): 0    Time: 0:00:07
Downloaded (bytes): 231750    Time: 0:00:08
Downloaded (bytes): 663750    Time: 0:00:08
Downloaded (bytes): 2191750    Time: 0:00:09[ Info: Downloading to /tmp/jl_ZTdiqg/alignment_files/PF00013.alignment.full.stk ...

Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:01
Downloaded (bytes): 0    Time: 0:00:02
Downloaded (bytes): 32087    Time: 0:00:02
Downloaded (bytes): 86384    Time: 0:00:02
Downloaded (bytes): 194762    Time: 0:00:02
Downloaded (bytes): 440687    Time: 0:00:02
Downloaded (bytes): 1030907    Time: 0:00:03
Downloaded (bytes): 2375297    Time: 0:00:03
Downloaded (bytes): 5408372    Time: 0:00:03
Downloaded (bytes): 8441447    Time: 0:00:03
Downloaded (bytes): 10720230    Time: 0:00:03
Downloaded (bytes): 13851433    Time: 0:00:03     Testing Pfam tests passed 

Testing completed after 61.92s

PkgEval succeeded after 104.44s