Package evaluation to test PALEOaqchem on Julia 1.11.7 (58327cce5e*) started at 2025-10-29T03:59:19.355 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.38s ################################################################################ # Installation # Installing PALEOaqchem... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [673cec3b] + PALEOaqchem v0.3.19 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [e1450e63] + BufferedStreams v1.2.2 [179af706] + CFTime v0.2.4 [d360d2e6] + ChainRulesCore v1.26.0 [da1fd8a2] + CodeTracking v2.0.1 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.4.1 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [3c3547ce] + DiskArrays v0.4.18 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [86223c79] + Graphs v1.13.1 [f67ccb44] + HDF5 v0.17.2 [5903a43b] + Infiltrator v1.9.3 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [aa1ae85d] + JuliaInterpreter v0.10.6 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.4.4 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.9 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [673cec3b] + PALEOaqchem v0.3.19 ⌃ [804b410e] + PALEOboxes v0.22.3 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.11.0 [fdea26ae] + SIMD v3.7.2 [91c51154] + SentinelArrays v1.4.8 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [1e6cf692] + TestEnv v1.102.2 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.14 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [63e82ce6] + SLEEF_jll v3.9.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.4+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.02s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 1333.19s ################################################################################ # Testing # Testing PALEOaqchem ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924 Status `/tmp/jl_2eario/Project.toml` [6e4b80f9] BenchmarkTools v1.6.3 [e30172f5] Documenter v1.15.0 [5903a43b] Infiltrator v1.9.3 ⌃ [1dea7af3] OrdinaryDiffEq v6.101.0 [673cec3b] PALEOaqchem v0.3.19 [804b410e] PALEOboxes v0.22.4 [bf7b4fbe] PALEOmodel v0.16.5 [41de04b1] PALEOocean v0.4.9 [295af30f] Revise v3.11.0 [fdea26ae] SIMD v3.7.2 [276daf66] SpecialFunctions v2.6.1 ⌅ [c3572dad] Sundials v4.28.0 [1e6cf692] TestEnv v1.102.2 [63e82ce6] SLEEF_jll v3.9.0+0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2eario/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 [13072b0f] AxisAlgorithms v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌃ [70df07ce] BracketingNonlinearSolve v1.3.0 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.4 [2a0fbf3d] CPUSummary v0.2.7 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v2.0.1 [944b1d66] CodecZlib v0.7.8 [1fbeeb36] CommonDataModel v0.4.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌃ [2b5f629d] DiffEqBase v6.176.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.9 [3c3547ce] DiskArrays v0.4.18 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.15.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.15 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.1.3 [5789e2e9] FileIO v1.17.1 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.1 [f67ccb44] HDF5 v0.17.2 ⌅ [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [5903a43b] Infiltrator v1.9.3 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 ⌅ [a98d9a8b] Interpolations v0.15.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌃ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.6 [ba0b0d4f] Krylov v0.10.2 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.8.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 ⌃ [7ed4a6bd] LinearSolve v3.26.0 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.4.4 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [bdf0d083] MultiFloats v2.3.0 [85f8d34a] NCDatasets v0.14.9 [d41bc354] NLSolversBase v7.10.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.3 ⌃ [8913a72c] NonlinearSolve v4.10.0 ⌅ [be0214bd] NonlinearSolveBase v1.14.0 ⌃ [5959db7a] NonlinearSolveFirstOrder v1.7.0 ⌃ [9a2c21bd] NonlinearSolveQuasiNewton v1.8.0 ⌃ [26075421] NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.101.0 ⌃ [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.4.0 ⌃ [6ad6398a] OrdinaryDiffEqBDF v1.9.0 ⌃ [bbf590c4] OrdinaryDiffEqCore v1.26.2 ⌃ [50262376] OrdinaryDiffEqDefault v1.7.0 ⌃ [4302a76b] OrdinaryDiffEqDifferentiation v1.11.0 ⌃ [9286f039] OrdinaryDiffEqExplicitRK v1.3.0 ⌃ [e0540318] OrdinaryDiffEqExponentialRK v1.7.0 ⌃ [becaefa8] OrdinaryDiffEqExtrapolation v1.7.0 ⌃ [5960d6e9] OrdinaryDiffEqFIRK v1.14.0 ⌃ [101fe9f7] OrdinaryDiffEqFeagin v1.3.0 ⌃ [d3585ca7] OrdinaryDiffEqFunctionMap v1.4.0 ⌃ [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.4.0 ⌃ [9f002381] OrdinaryDiffEqIMEXMultistep v1.6.0 ⌃ [521117fe] OrdinaryDiffEqLinear v1.4.0 ⌃ [1344f307] OrdinaryDiffEqLowOrderRK v1.5.0 ⌃ [b0944070] OrdinaryDiffEqLowStorageRK v1.5.0 ⌃ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.12.0 ⌃ [c9986a66] OrdinaryDiffEqNordsieck v1.3.0 ⌃ [5dd0a6cf] OrdinaryDiffEqPDIRK v1.5.0 ⌃ [5b33eab2] OrdinaryDiffEqPRK v1.3.0 ⌃ [04162be5] OrdinaryDiffEqQPRK v1.3.0 ⌃ [af6ede74] OrdinaryDiffEqRKN v1.4.0 ⌃ [43230ef6] OrdinaryDiffEqRosenbrock v1.15.1 ⌃ [2d112036] OrdinaryDiffEqSDIRK v1.6.0 ⌃ [669c94d9] OrdinaryDiffEqSSPRK v1.5.0 ⌃ [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.5.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 ⌃ [fa646aed] OrdinaryDiffEqSymplecticRK v1.6.0 ⌃ [b1df2697] OrdinaryDiffEqTsit5 v1.4.0 ⌃ [79d7bb75] OrdinaryDiffEqVerner v1.5.0 [673cec3b] PALEOaqchem v0.3.19 [804b410e] PALEOboxes v0.22.4 [bf7b4fbe] PALEOmodel v0.16.5 [41de04b1] PALEOocean v0.4.9 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v0.4.34 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [295af30f] Revise v3.11.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 ⌃ [0bca4576] SciMLBase v2.99.0 [19f34311] SciMLJacobianOperators v0.1.11 ⌅ [c0aeaf25] SciMLOperators v0.4.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 ⌃ [727e6d20] SimpleNonlinearSolve v2.7.0 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 [47a9eef4] SparseDiffTools v2.26.0 [0a514795] SparseMatrixColorings v0.4.22 [06eadbd4] SparsityTracing v0.2.6 [e56a9233] Sparspak v0.3.14 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [7792a7ef] StrideArraysCore v0.5.8 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.2 ⌅ [c3572dad] Sundials v4.28.0 [2efcf032] SymbolicIndexingInterface v0.3.46 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [1e6cf692] TestEnv v1.102.2 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [19fa3120] VertexSafeGraphs v0.2.0 [efce3f68] WoodburyMatrices v1.0.0 ⌅ [ddb6d928] YAML v0.4.12 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [2e619515] 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v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling PALEOaqchem... 77051.8 ms ✓ PALEOboxes 22218.4 ms ✓ PALEOaqchem 2 dependencies successfully precompiled in 102 seconds. 151 already precompiled. 1 dependency had output during precompilation: ┌ PALEOboxes │ [ Info: PALEOboxes.SIMDutils defining USE_SLEEF = false in LocalPreferences.toml └ [ Info: Defining Vectorized SIMD functions log, exp, log10 functions from Sleef library /home/pkgeval/.julia/artifacts/da0e064ab6bc89835082e4314c9646afff56d46d/lib/libsleef.so bench_Constants(): 326.207 ns (0 allocations: 0 bytes) bench_Constants_simd(): 445.652 ns (0 allocations: 0 bytes) bench_TAfromTCpHfree() do_dTAdpH=false 76.133 ns (0 allocations: 0 bytes) do_dTAdpH=true 96.641 ns (0 allocations: 0 bytes) bench_TAfromTCpHfree_simd() do_dTAdpH=false 77.628 ns (0 allocations: 0 bytes) do_dTAdpH=true 84.982 ns (0 allocations: 0 bytes) bench_pHfromTATC() 552.882 ns (0 allocations: 0 bytes) bench_pHfromTATC_simd() 552.936 ns (0 allocations: 0 bytes) Precompiling OrdinaryDiffEq... 2473.6 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 5296.9 ms ✓ SciMLJacobianOperators 1367.3 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 17257.1 ms ✓ LinearSolve 8465.2 ms ✓ OrdinaryDiffEqCore 7247.8 ms ✓ LineSearch 11777.8 ms ✓ NonlinearSolveBase 6525.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 3894.1 ms ✓ LinearSolve → LinearSolveEnzymeExt 7224.7 ms ✓ LinearSolve → LinearSolveSparseArraysExt 2557.7 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 2835.6 ms ✓ LineSearch → LineSearchLineSearchesExt 2477.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 2950.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 2504.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 1955.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 4972.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 2410.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 6501.2 ms ✓ BracketingNonlinearSolve 4503.7 ms ✓ OrdinaryDiffEqExplicitRK 6167.4 ms ✓ OrdinaryDiffEqHighOrderRK 6151.5 ms ✓ OrdinaryDiffEqStabilizedRK 4710.8 ms ✓ OrdinaryDiffEqSymplecticRK 6590.4 ms ✓ OrdinaryDiffEqSSPRK 7509.9 ms ✓ OrdinaryDiffEqLowOrderRK 4078.1 ms ✓ OrdinaryDiffEqFunctionMap 4913.9 ms ✓ OrdinaryDiffEqLinear 11893.8 ms ✓ OrdinaryDiffEqTsit5 57247.6 ms ✓ OrdinaryDiffEqVerner 6988.9 ms ✓ OrdinaryDiffEqPRK 5843.2 ms ✓ OrdinaryDiffEqRKN 5749.4 ms ✓ OrdinaryDiffEqFeagin 4652.7 ms ✓ OrdinaryDiffEqQPRK 7384.3 ms ✓ OrdinaryDiffEqLowStorageRK 9531.7 ms ✓ OrdinaryDiffEqDifferentiation 25897.8 ms ✓ NonlinearSolveQuasiNewton 13116.4 ms ✓ NonlinearSolveSpectralMethods 40726.5 ms ✓ NonlinearSolveFirstOrder 2527.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 5502.6 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 4375.1 ms ✓ OrdinaryDiffEqNordsieck 51628.8 ms ✓ OrdinaryDiffEqExponentialRK 11239.0 ms ✓ OrdinaryDiffEqExtrapolation 40388.5 ms ✓ OrdinaryDiffEqRosenbrock 6863.4 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3446.4 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 2879.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 19173.2 ms ✓ SimpleNonlinearSolve 3423.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 3291.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 27023.6 ms ✓ NonlinearSolve 10706.3 ms ✓ OrdinaryDiffEqNonlinearSolve 10130.8 ms ✓ OrdinaryDiffEqStabilizedIRK 11721.5 ms ✓ OrdinaryDiffEqSDIRK 9872.2 ms ✓ OrdinaryDiffEqIMEXMultistep 11602.7 ms ✓ OrdinaryDiffEqPDIRK 169440.7 ms ✓ OrdinaryDiffEqFIRK 28452.5 ms ✓ OrdinaryDiffEqBDF 103257.8 ms ✓ OrdinaryDiffEqDefault 46057.2 ms ✓ OrdinaryDiffEq 60 dependencies successfully precompiled in 920 seconds. 175 already precompiled. Precompiling NonlinearSolveSundialsExt... 8607.5 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 1 dependency successfully precompiled in 11 seconds. 196 already precompiled. Precompiling PALEOocean... Info Given PALEOocean was explicitly requested, output will be shown live  ┌ Warning: `LinearInterpolation(args...; kwargs...)` is deprecated, use `linear_interpolation(args...; kwargs...)` instead. │ caller = top-level scope at Burial.jl:291 └ @ Core ~/.julia/packages/PALEOocean/Cpquk/src/oceanfloor/Burial.jl:291 24360.4 ms ✓ PALEOocean 1 dependency successfully precompiled in 27 seconds. 154 already precompiled. 1 dependency had output during precompilation: ┌ PALEOocean │ [Output was shown above] └ [ Info: OceanTransportTMM adding default TMMDir => /home/pkgeval/.julia/packages/PALEOocean/TMM to [PALEOocean.Ocean.OceanTransportTMM] LocalPreferences.toml (modify for your local setup) [ Info: OceanTransportTMM adding default TMMDir => /home/pkgeval/.julia/packages/PALEOocean/TMM to [PALEOboxes] LocalPreferences.toml (modify for your local setup) Precompiling PALEOmodel... 30131.8 ms ✓ PALEOmodel 1 dependency successfully precompiled in 34 seconds. 265 already precompiled. Precompiling LinearSolveSparspakExt... 18151.8 ms ✓ LinearSolve → LinearSolveSparspakExt 1 dependency successfully precompiled in 19 seconds. 111 already precompiled. Precompiling NonlinearSolveNLsolveExt... 7977.4 ms ✓ NonlinearSolve → NonlinearSolveNLsolveExt 1 dependency successfully precompiled in 10 seconds. 201 already precompiled. ┌ Info: │ ================================================================================ │ create_model_from_config: configmodel test_carbchem │ config_file: /home/pkgeval/.julia/packages/PALEOaqchem/lxx8X/test/configcarbchem.yaml └ ================================================================================ ┌ Info: Model.parameters: └ CIsotope = IsotopeLinear ┌ Info: │ ================================================================================ │ creating Domains └ ================================================================================ [ Info: generated Reaction catalog with 67 Reactions ┌ Info: │ ================================================================================ │ creating domain 'global' ID=1 └ ================================================================================ ┌ Info: │ ================================================================================ │ creating domain 'ocean' ID=2 └ ================================================================================ ┌ Info: create_reaction_from_config: ocean.reservoir_DIC classname ReactionReservoirTotal │ set parameters: [config.yaml] field_data =external%CIsotope │ expandvalue: external%CIsotope -> IsotopeLinear │ after substitution field_data=IsotopeLinear │ set parameters: [Default] total =true │ set parameters: [Default] limit_delta_conc =0.0 └ set parameters: [Default] state_conc =false ┌ Info: create_reaction_from_config: ocean.reservoir_TAlk classname ReactionReservoirTotal │ set parameters: [Default] field_data =PALEOboxes.ScalarData │ set parameters: [Default] total =true │ set parameters: [Default] limit_delta_conc =0.0 └ set parameters: [Default] state_conc =false ┌ Info: create_reaction_from_config: ocean.notransport3box classname ReactionOceanNoTransport │ set parameters: [config.yaml] area =[1.0, 1.0, 1.0] └ set parameters: [config.yaml] depth =[100.0, 250.0, 3782.1954452017744] ┌ Info: create_reaction_from_config: ocean.oceanphys_const classname ReactionConst └ set parameters: [config.yaml] constnames =["temp", "sal"] ┌ Info: create_reaction_from_config: ocean.carbchem classname ReactionCO2SYS │ set parameters: [Default] WhichKs =10 │ set parameters: [Default] WhoseKSO4 =1 │ set parameters: [config.yaml] components =["Ci", "B", "S", "F", "Omega"] │ set parameters: [config.yaml] defaultconcs =["TS", "TF", "TB", "Ca"] │ set parameters: [config.yaml] outputs =["pCO2", "xCO2dryinp", "CO3", "OmegaCA", "OmegaAR"] │ set parameters: [Default] output_pHtot =true │ set parameters: [config.yaml] solve_pH =solve │ set parameters: [Default] pHtol =2.220446049250313e-14 └ set parameters: [Default] simd_width =1 ┌ Info: │ ================================================================================ │ creating domain 'oceansurface' ID=3 └ ================================================================================ ┌ Info: │ ================================================================================ │ creating domain 'oceanfloor' ID=4 └ ================================================================================ ┌ Warning: create_domain_from_config Domain 'oceanfloor' empty 'reactions:' key in .yaml file └ @ PALEOboxes ~/.julia/packages/PALEOboxes/k4QWy/src/Domain.jl:349 ┌ Info: │ ================================================================================ │ set_model_geometry └ ================================================================================ [ Info: set ocean.oceansurface Subdomain size=3 [ Info: set ocean.oceanfloor Subdomain size=3 [ Info: Ocean.set_model_domains: [ Info: ocean Domain size=3 grid=UnstructuredVectorGrid(ncells=3, cellnames=Dict{Symbol, Int64}(), subdomains: ["oceansurface", "oceanfloor"]) [ Info: oceansurface Domain size=3 grid=UnstructuredVectorGrid(ncells=3, cellnames=Dict{Symbol, Int64}(), subdomains: ["ocean"]) [ Info: oceanfloor Domain size=3 grid=UnstructuredVectorGrid(ncells=3, cellnames=Dict{Symbol, Int64}(), subdomains: ["ocean"]) ┌ Info: │ ================================================================================ │ register_reaction_methods! └ ================================================================================ ┌ Info: register_methods! ocean.carbchem ReactionCO2SYS │ modern default concentration Variables ["TS_conc", "TF_conc", "TB_conc", "Ca_conc"] │ adding input concentration Variables ["TCi_conc", "TB_conc", "TS_conc", "TF_conc", "Ca_conc"] │ adding additional output Variable %reaction%pCO2 (atm) 'CO2 partial pressure (fugacity corrected)' │ adding additional output Variable %reaction%xCO2dryinp () 'mixing ratio of CO2 in dry air at 1 atm (always > pCO2 due to H2O vapour pressure)' │ adding additional output Variable %reaction%CO3 (mol m-3) 'carbonate ion CO3-- concentration' │ adding additional output Variable %reaction%OmegaCA () 'calcite saturation' │ adding additional output Variable %reaction%OmegaAR () 'aragonite saturation' └ outputs ["pCO2", "xCO2dryinp", "CO3", "OmegaCA", "OmegaAR"] at indices [16, 17, 13, 36, 37] in res (pHfree = 1, H = 2, OH = 3, TA = 4, dTAdpH = 5, TS = 6, HSO4 = 7, TF = 8, HF = 9, TCi = 10, CO2 = 11, HCO3 = 12, CO3 = 13, CAlk = 14, fCO2 = 15, pCO2 = 16, xCO2dryinp = 17, TB = 18, BAlk = 19, TP = 20, H3PO4 = 21, H2PO4 = 22, HPO4 = 23, PO4 = 24, PengCorrection = 25, PAlk = 26, TSi = 27, SiAlk = 28, TH2S = 29, H2S = 30, HSAlk = 31, TNH3 = 32, NH4 = 33, NH3Alk = 34, Ca = 35, OmegaCA = 36, OmegaAR = 37) ┌ Info: │ ================================================================================ │ link_variables: first pass └ ================================================================================ ┌ Info: │ ================================================================================ │ link_variables: register_reaction_dynamic_methods and configure variables └ ================================================================================ ┌ Info: _configure_variables: ReactionReservoir ocean.reservoir_DIC variable_links: │ set variable_links: R -> DIC │ set variable_links: R_sms -> DIC_sms │ set variable_links: R_total -> DIC_total │ set variable_links: R_conc -> DIC_conc │ set variable_links: R_delta -> DIC_delta │ _configure_variables: ReactionReservoir ocean.reservoir_DIC variable_attributes: │ set attribute: R :initial_value = 2.0 └ set attribute: R :initial_delta = -1.0 ┌ Info: _configure_variables: ReactionReservoir ocean.reservoir_TAlk variable_links: │ set variable_links: R -> TAlk │ set variable_links: R_sms -> TAlk_sms │ set variable_links: R_total -> TAlk_total │ set variable_links: R_conc -> TAlk_conc │ _configure_variables: ReactionReservoir ocean.reservoir_TAlk variable_attributes: └ set attribute: R :initial_value = 2.0 ┌ Info: _configure_variables: ReactionConst ocean.oceanphys_const variable_attributes: │ set attribute: temp :initial_value = [294.65, 275.65, 275.65] └ set attribute: sal :initial_value = 35.0 ┌ Info: _configure_variables: ReactionCO2SYS ocean.carbchem variable_links: └ set variable_links: TCi_conc -> DIC_conc ┌ Info: │ ================================================================================ │ link_variables: second pass: └ ================================================================================ ┌ Info: │ ================================================================================ │ link_variables! unlinked variables: └ ================================================================================ ┌ Info: │ ================================================================================ │ create_model_from_config: done └ ================================================================================ ┌ Info: │ ================================================================================ │ PALEOmodel.initialize! start └ ================================================================================ ┌ Info: │ ================================================================================ │ allocate_variables! (modeldata arrays_idx=1) └ ================================================================================ [ Info: Domain global data dimensions PALEOboxes.NamedDimension[] allocating 0 variables (hostdep=nothing) [ Info: Domain ocean data dimensions PALEOboxes.NamedDimension[] allocating 30 variables (hostdep=nothing) [ Info: Domain oceansurface data dimensions PALEOboxes.NamedDimension[] allocating 1 variables (hostdep=nothing) [ Info: Domain oceanfloor data dimensions PALEOboxes.NamedDimension[] allocating 3 variables (hostdep=nothing) [ Info: set_default_solver_view: ┌ Info: SolverView: │ host-dependent Variables: │ ------------------------------------------------------------------------------------------------------------------------------------------------ │ Domain operatorID VF_StateExplicit VF_Total VF_Constraint VF_StateTotal VF_State VF_Undefined │ global 0 0 0 0 0 0 0 │ ocean 0 2 0 0 0 0 0 │ oceansurface 0 0 0 0 0 0 0 │ oceanfloor 0 0 0 0 0 0 0 │ ------------------------------------------------------------------------------------------------------------------------------------------------ │ Total - 2 0 0 0 0 0 │ ------------------------------------------------------------------------------------------------------------------------------------------------ │ n_state_vars 2 (stateexplicit 2 + statetotal 0 + state 0) │ n_equations 2 (stateexplicit 2 + total 0 + constraint 0) │ including all host-dependent non-state Variables └ host-dependent non-state Variables (:vfunction PB.VF_Undefined): Any[] ┌ Info: │ ================================================================================ │ initialize_reactiondata! (modeldata arrays_indices=1:1) └ ================================================================================ [ Info: prepare_do_carbchem: ocean.carbchem simd_width=1 using BufType Float64 ┌ Info: │ ================================================================================ │ dispatch_setup :setup └ ================================================================================ [ Info: ocean.oceanphys_const.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.temp = [294.65, 275.65, 275.65] [ Info: init_values! :initial_value ocean.sal = 35.0 [ Info: ocean.carbchem.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.pHfree = 8.0 ┌ Info: │ ================================================================================ │ dispatch_setup :norm_value └ ================================================================================ [ Info: ocean.reservoir_DIC.setup_initialvalue_vars_default: [ Info: init_values! :norm_value ocean.DIC = 1.0 * volume, delta=1.0 (fixed delta value to calculate norm) [ Info: ocean.reservoir_TAlk.setup_initialvalue_vars_default: [ Info: init_values! :norm_value ocean.TAlk = 1.0 * volume ┌ Info: │ ================================================================================ │ dispatch_setup :initial_value └ ================================================================================ [ Info: ocean.reservoir_DIC.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.DIC = 2.0 * volume, delta=-1.0 [ Info: ocean.reservoir_TAlk.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.TAlk = 2.0 * volume ┌ Info: │ ================================================================================ │ PALEOmodel.initialize! done └ ================================================================================ bench_method initialize bench_method do ocean.carbchem.do_carbchem: @btime: 1.331 μs (0 allocations: 0 bytes) ocean model created variables after do_stateandeqb: ocean.zmid = [-50.0, -125.0, -1891.0977226008872] ocean.TS_conc = [28.99779085444735, 28.99779085444735, 28.99779085444735] ocean.DIC_conc = PALEOboxes.IsotopeLinear{Float64, Float64}[(v=2.0, v_moldelta=-2.0, ‰=-1.0), (v=2.0, v_moldelta=-2.0, ‰=-1.0), (v=2.0, v_moldelta=-2.0, ‰=-1.0)] ocean.carbchem/pCO2 = [0.001979256024164936, 0.000974097310688794, 0.0009602445515261407] ocean.rho_ref = [1027.0, 1027.0, 1027.0] ocean.volume_total = [4132.195445201774] ocean.zupper = [0.0, 0.0, 0.0] ocean.TB_conc = [0.4269239, 0.4269239, 0.4269239] ocean.TAlk_conc = [2.0, 2.0, 2.0] ocean.Ca_conc = [10.562253082772667, 10.562253082772667, 10.562253082772667] ocean.temp = [294.65, 275.65, 275.65] ocean.carbchem/OmegaCA = [0.9455726090191459, 0.791482072027601, 0.5257976074964462] ocean.carbchem/OmegaAR = [0.6173652892259888, 0.4991668721082397, 0.3388392963157649] ocean.sal = [35.0, 35.0, 35.0] ocean.TAlk_total = [8264.390890403549] ocean.pressure = [50.0, 125.0, 1891.0977226008872] ocean.Abox = [1.0, 1.0, 1.0] ocean.carbchem/xCO2dryinp = [0.0020296152102653405, 0.000981038758804758, 0.0009670872844440077] ocean.volume = [100.0, 250.0, 3782.1954452017744] ocean.TF_conc = [0.0701706373599532, 0.0701706373599532, 0.0701706373599532] ocean.pHtot = [7.354012869642817, 7.6020215057634175, 7.525099896712385] ocean.DIC_delta = [-1.0, -1.0, -1.0] ocean.DIC_total = PALEOboxes.IsotopeLinear{Float64, Float64}[(v=8264.390890403549, v_moldelta=-8264.390890403549, ‰=-1.0)] ocean.zlower = [-100.0, -250.0, -3782.1954452017744] ocean.pHfree = [7.449818525338364, 7.647310229671182, 7.564935438070559] ocean.carbchem/CO3 = [0.040847170229903404, 0.034883354513237465, 0.033119417878596735] ┌ Info: │ ================================================================================ │ create_model_from_config: configmodel test_carbchem_constraint │ config_file: /home/pkgeval/.julia/packages/PALEOaqchem/lxx8X/test/configcarbchem.yaml └ ================================================================================ ┌ Info: Model.parameters: └ CIsotope = IsotopeLinear ┌ Info: │ ================================================================================ │ creating Domains └ ================================================================================ [ Info: generated Reaction catalog with 67 Reactions ┌ Info: │ ================================================================================ │ creating domain 'global' ID=1 └ ================================================================================ ┌ Info: │ ================================================================================ │ creating domain 'ocean' ID=2 └ ================================================================================ ┌ Info: create_reaction_from_config: ocean.reservoir_DIC classname ReactionReservoirTotal │ set parameters: [config.yaml] field_data =external%CIsotope │ expandvalue: external%CIsotope -> IsotopeLinear │ after substitution field_data=IsotopeLinear │ set parameters: [Default] total =true │ set parameters: [Default] limit_delta_conc =0.0 └ set parameters: [Default] state_conc =false ┌ Info: create_reaction_from_config: ocean.reservoir_TAlk classname ReactionReservoirTotal │ set parameters: [Default] field_data =PALEOboxes.ScalarData │ set parameters: [Default] total =true │ set parameters: [Default] limit_delta_conc =0.0 └ set parameters: [Default] state_conc =false ┌ Info: create_reaction_from_config: ocean.notransport3box classname ReactionOceanNoTransport │ set parameters: [config.yaml] area =[1.0, 1.0, 1.0] └ set parameters: [config.yaml] depth =[100.0, 250.0, 3782.1954452017744] ┌ Info: create_reaction_from_config: ocean.oceanphys_const classname ReactionConst └ set parameters: [config.yaml] constnames =["temp", "sal"] ┌ Info: create_reaction_from_config: ocean.H_primary_species classname ReactionConstraintReservoir │ set parameters: [config.yaml] primary_total_stoich=0.0 │ set parameters: [Default] primary_other_components=String[] │ set parameters: [config.yaml] primary_variable =p_concentration └ set parameters: [config.yaml] constraint_variable =amount ┌ Info: create_reaction_from_config: ocean.carbchem classname ReactionCO2SYS │ set parameters: [Default] WhichKs =10 │ set parameters: [Default] WhoseKSO4 =1 │ set parameters: [config.yaml] components =["Ci", "B", "S", "F", "Omega"] │ set parameters: [config.yaml] defaultconcs =["TS", "TF", "TB", "Ca"] │ set parameters: [config.yaml] outputs =["pCO2", "xCO2dryinp", "CO3", "OmegaCA", "OmegaAR"] │ set parameters: [Default] output_pHtot =true │ set parameters: [config.yaml] solve_pH =speciationTAlk │ set parameters: [Default] pHtol =2.220446049250313e-14 └ set parameters: [Default] simd_width =1 ┌ Info: │ ================================================================================ │ creating domain 'oceansurface' ID=3 └ ================================================================================ ┌ Info: │ ================================================================================ │ creating domain 'oceanfloor' ID=4 └ ================================================================================ ┌ Warning: create_domain_from_config Domain 'oceanfloor' empty 'reactions:' key in .yaml file └ @ PALEOboxes ~/.julia/packages/PALEOboxes/k4QWy/src/Domain.jl:349 ┌ Info: │ ================================================================================ │ set_model_geometry └ ================================================================================ [ Info: set ocean.oceansurface Subdomain size=3 [ Info: set ocean.oceanfloor Subdomain size=3 [ Info: Ocean.set_model_domains: [ Info: ocean Domain size=3 grid=UnstructuredVectorGrid(ncells=3, cellnames=Dict{Symbol, Int64}(), subdomains: ["oceansurface", "oceanfloor"]) [ Info: oceansurface Domain size=3 grid=UnstructuredVectorGrid(ncells=3, cellnames=Dict{Symbol, Int64}(), subdomains: ["ocean"]) [ Info: oceanfloor Domain size=3 grid=UnstructuredVectorGrid(ncells=3, cellnames=Dict{Symbol, Int64}(), subdomains: ["ocean"]) ┌ Info: │ ================================================================================ │ register_reaction_methods! └ ================================================================================ ┌ Info: register_methods! ocean.carbchem ReactionCO2SYS │ modern default concentration Variables ["TS_conc", "TF_conc", "TB_conc", "Ca_conc"] │ adding input concentration Variables ["TCi_conc", "TB_conc", "TS_conc", "TF_conc", "Ca_conc"] │ adding additional output Variable %reaction%pCO2 (atm) 'CO2 partial pressure (fugacity corrected)' │ adding additional output Variable %reaction%xCO2dryinp () 'mixing ratio of CO2 in dry air at 1 atm (always > pCO2 due to H2O vapour pressure)' │ adding additional output Variable %reaction%CO3 (mol m-3) 'carbonate ion CO3-- concentration' │ adding additional output Variable %reaction%OmegaCA () 'calcite saturation' │ adding additional output Variable %reaction%OmegaAR () 'aragonite saturation' └ outputs ["pCO2", "xCO2dryinp", "CO3", "OmegaCA", "OmegaAR"] at indices [16, 17, 13, 36, 37] in res (pHfree = 1, H = 2, OH = 3, TA = 4, dTAdpH = 5, TS = 6, HSO4 = 7, TF = 8, HF = 9, TCi = 10, CO2 = 11, HCO3 = 12, CO3 = 13, CAlk = 14, fCO2 = 15, pCO2 = 16, xCO2dryinp = 17, TB = 18, BAlk = 19, TP = 20, H3PO4 = 21, H2PO4 = 22, HPO4 = 23, PO4 = 24, PengCorrection = 25, PAlk = 26, TSi = 27, SiAlk = 28, TH2S = 29, H2S = 30, HSAlk = 31, TNH3 = 32, NH4 = 33, NH3Alk = 34, Ca = 35, OmegaCA = 36, OmegaAR = 37) ┌ Info: │ ================================================================================ │ link_variables: first pass └ ================================================================================ ┌ Info: │ ================================================================================ │ link_variables: register_reaction_dynamic_methods and configure variables └ ================================================================================ ┌ Info: _configure_variables: ReactionReservoir ocean.reservoir_DIC variable_links: │ set variable_links: R -> DIC │ set variable_links: R_sms -> DIC_sms │ set variable_links: R_total -> DIC_total │ set variable_links: R_conc -> DIC_conc │ set variable_links: R_delta -> DIC_delta │ _configure_variables: ReactionReservoir ocean.reservoir_DIC variable_attributes: │ set attribute: R :initial_value = 2.0 └ set attribute: R :initial_delta = -1.0 ┌ Info: _configure_variables: ReactionReservoir ocean.reservoir_TAlk variable_links: │ set variable_links: R -> TAlk │ set variable_links: R_sms -> TAlk_sms │ set variable_links: R_total -> TAlk_total │ set variable_links: R_conc -> TAlk_conc │ _configure_variables: ReactionReservoir ocean.reservoir_TAlk variable_attributes: └ set attribute: R :initial_value = 2.0 ┌ Info: _configure_variables: ReactionConst ocean.oceanphys_const variable_attributes: │ set attribute: temp :initial_value = [294.65, 275.65, 275.65] └ set attribute: sal :initial_value = 35.0 ┌ Info: _configure_variables: ReactionConstraintReservoir ocean.H_primary_species variable_links: │ set variable_links: R_constraint -> TAlk_constraint │ set variable_links: R_calc -> TAlk_calc │ set variable_links: R -> TAlk │ set variable_links: Primary_conc -> H_conc │ set variable_links: Primary_pconc -> pHfree │ _configure_variables: ReactionConstraintReservoir ocean.H_primary_species variable_attributes: │ set attribute: R_constraint :norm_value = 1.0 │ set attribute: Primary_pconc :initial_value = 8.0 └ set attribute: Primary_pconc :norm_value = 1.0 ┌ Info: _configure_variables: ReactionCO2SYS ocean.carbchem variable_links: └ set variable_links: TCi_conc -> DIC_conc ┌ Info: │ ================================================================================ │ link_variables: second pass: └ ================================================================================ ┌ Info: │ ================================================================================ │ link_variables! unlinked variables: └ ================================================================================ ┌ Info: │ ================================================================================ │ create_model_from_config: done └ ================================================================================ ┌ Info: │ ================================================================================ │ PALEOmodel.initialize! start └ ================================================================================ ┌ Info: │ ================================================================================ │ allocate_variables! (modeldata arrays_idx=1) └ ================================================================================ [ Info: Domain global data dimensions PALEOboxes.NamedDimension[] allocating 0 variables (hostdep=nothing) [ Info: Domain ocean data dimensions PALEOboxes.NamedDimension[] allocating 33 variables (hostdep=nothing) [ Info: Domain oceansurface data dimensions PALEOboxes.NamedDimension[] allocating 1 variables (hostdep=nothing) [ Info: Domain oceanfloor data dimensions PALEOboxes.NamedDimension[] allocating 3 variables (hostdep=nothing) [ Info: set_default_solver_view: ┌ Info: SolverView: │ host-dependent Variables: │ ------------------------------------------------------------------------------------------------------------------------------------------------ │ Domain operatorID VF_StateExplicit VF_Total VF_Constraint VF_StateTotal VF_State VF_Undefined │ global 0 0 0 0 0 0 0 │ ocean 0 2 0 1 0 1 0 │ oceansurface 0 0 0 0 0 0 0 │ oceanfloor 0 0 0 0 0 0 0 │ ------------------------------------------------------------------------------------------------------------------------------------------------ │ Total - 2 0 1 0 1 0 │ ------------------------------------------------------------------------------------------------------------------------------------------------ │ n_state_vars 3 (stateexplicit 2 + statetotal 0 + state 1) │ n_equations 3 (stateexplicit 2 + total 0 + constraint 1) │ including all host-dependent non-state Variables └ host-dependent non-state Variables (:vfunction PB.VF_Undefined): Any[] ┌ Info: │ ================================================================================ │ initialize_reactiondata! (modeldata arrays_indices=1:1) └ ================================================================================ [ Info: prepare_do_carbchem: ocean.carbchem simd_width=1 using BufType Float64 ┌ Info: │ ================================================================================ │ dispatch_setup :setup └ ================================================================================ [ Info: ocean.oceanphys_const.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.temp = [294.65, 275.65, 275.65] [ Info: init_values! :initial_value ocean.sal = 35.0 ┌ Info: │ ================================================================================ │ dispatch_setup :norm_value └ ================================================================================ [ Info: ocean.H_primary_species.setup_initialvalue_vars_default: [ Info: init_values! :norm_value ocean.pHfree = 1.0 [ Info: ocean.reservoir_DIC.setup_initialvalue_vars_default: [ Info: init_values! :norm_value ocean.DIC = 1.0 * volume, delta=1.0 (fixed delta value to calculate norm) [ Info: ocean.reservoir_TAlk.setup_initialvalue_vars_default: [ Info: init_values! :norm_value ocean.TAlk = 1.0 * volume [ Info: ocean.H_primary_species.setup_initialvalue_vars_default: [ Info: init_values! :norm_value ocean.TAlk_constraint = 1.0 * volume ┌ Info: │ ================================================================================ │ dispatch_setup :initial_value └ ================================================================================ [ Info: ocean.H_primary_species.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.pHfree = 8.0 [ Info: ocean.reservoir_DIC.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.DIC = 2.0 * volume, delta=-1.0 [ Info: ocean.reservoir_TAlk.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.TAlk = 2.0 * volume [ Info: ocean.H_primary_species.setup_initialvalue_vars_default: [ Info: init_values! :initial_value ocean.TAlk_constraint = 0.0 * volume ┌ Info: │ ================================================================================ │ PALEOmodel.initialize! done └ ================================================================================ =========================================================== integrate to approx steady state with solver integrateDAE =========================================================== ┌ Info: │ ================================================================================ │ PALEOmodel.ODE.integrateDAE: │ tspan: (0, 100000.0) │ algorithm: IDA{:Dense, Nothing, Nothing}(0, 0, 0, 5, 7, 0.33, 3, 10, 0.0033, 5, 4, 10, 100, true, false, nothing, nothing) │ Jacobian: NoJacobian │ using 1 BLAS threads └ ================================================================================ [ Info: DAEfunction: using Jacobian NoJacobian [ Info: jac_config_dae: jac_ad=NoJacobian [ Info: calling get_inconsistent_initial_deriv 4.079805 seconds (1.72 M allocations: 93.331 MiB, 1.67% gc time, 99.98% compilation time) ┌ Info: │ ================================================================================ │ print_sol_stats: │ retcode=Success │ alg=IDA{:Dense, Nothing, Nothing}(0, 0, 0, 5, 7, 0.33, 3, 10, 0.0033, 5, 4, 10, 100, true, false, nothing, nothing) │ stats=SciMLBase.DEStats │ Number of function 1 evaluations: 23 │ Number of function 2 evaluations: 0 │ Number of W matrix evaluations: 11 │ Number of linear solves: 0 │ Number of Jacobians created: 11 │ Number of nonlinear solver iterations: 21 │ Number of nonlinear solver convergence failures: 0 │ Number of fixed-point solver iterations: 0 │ Number of fixed-point solver convergence failures: 0 │ Number of rootfind condition calls: 0 │ Number of accepted steps: 11 │ Number of rejected steps: 0 │ length(sol.t) 12 │ size(sol) (12, 12) └ ================================================================================ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 807 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm13ConstantRangeC2ENS_5APIntE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) unknown function (ip: 0x37738b2000000003) unknown function (ip: 0x2ba2b5df) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [ Info: ODE.calc_output_sol!: 12 records [ Info: ODE.calc_output_sol!: done ┌ Info: │ ================================================================================ │ PALEOmodel.ODE.integrateDAE: done └ ================================================================================ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x75e70bf72c92) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x75e70bf5f01d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x75e70bf5359a) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x75e70bf5329d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x75e70bf52c7d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x75e70bf4f0f6) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2835 include at ./Base.jl:562 jfptr_include_47022.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 exec_options at ./client.jl:316 _start at ./client.jl:524 jfptr__start_73678.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x75e70d42f249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000075e7005fc010 Total snapshots: 208. Utilization: 0% ╎208 @Base/client.jl:524; _start() ╎ 208 @Base/client.jl:316; exec_options(opts::Base.JLOptions) ╎ 208 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 208 @Base/loading.jl:2835; _include(mapexpr::Function, mod::Module, _pat… ╎ 208 @Base/loading.jl:2775; include_string(mapexpr::typeof(identity), mo… ╎ 208 @Base/boot.jl:430; eval ╎ ╎ 208 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 208 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 208 @Pkg/src/API.jl:147; test ╎ ╎ 208 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 208 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 208 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec… ╎ ╎ ╎ 208 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 208 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 208 …rc/Operations.jl:2011; test ╎ ╎ ╎ 208 …rc/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 208 …c/Operations.jl:1841; kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 208 …c/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 208 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 208 @Base/file.jl:815; mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 208 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 208 …Operations.jl:1902; (::Pkg.Operations.var"#116#12… ╎ ╎ ╎ ╎ ╎ 208 …Operations.jl:1793; with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 208 …Operations.jl:1935; (::Pkg.Operations.var"#118#… ╎ ╎ ╎ ╎ ╎ 208 @Base/env.jl:265; withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 208 …perations.jl:2086; (::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ ╎ 208 …erations.jl:2146; subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 208 …/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 208 …/process.jl:694; wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 208 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 208 …ondition.jl:130; wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 208 …ase/task.jl:1021; wait() 207╎ ╎ ╎ ╎ ╎ ╎ ╎ 208 …ase/task.jl:1012; poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [807] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PALEOaqchem/lxx8X/test/runcarbchemtests.jl:13 _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE14getSymbolFlagsENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object10ObjectFile14getSymbolValueENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE16getSymbolAddressENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) poptask at ./task.jl:1012 wait at ./task.jl:1021 getAddress at /source/usr/include/llvm/Object/ObjectFile.h:408 [inlined] get_function_name_and_base at /source/src/debuginfo.cpp:751 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1147 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1179 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1274 ijl_lookup_code_address at /source/src/stackwalk.c:593 #wait#733 at ./condition.jl:130 lookup at ./stacktraces.jl:108 _lookup_corrected at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:454 #8 at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:443 unknown function (ip: 0x707397bb238f) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 98007539 (Pool: 98005015; Big: 2524); GC: 133 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:582 #1192 at ./Base.jl:622 jfptr_YY.1192_76252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 29794124 (Pool: 29789871; Big: 4253); GC: 43 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#763 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67129.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 ocean model created variables after integrate to steady-state with integrateDAE: ocean.zmid = [-50.0, -125.0, -1891.0977226008872] jlcapi_uv_writecb_task_67593.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 ocean.TAlk_calc = [200.00000000000006, 500.0000000000001, 7564.390890403548] uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 ocean.TS_conc = [28.99779085444735, 28.99779085444735, 28.99779085444735] ocean.DIC_conc = PALEOboxes.IsotopeLinear{Float64, Float64}[(v=2.0, v_moldelta=-2.0, ‰=-1.0), (v=2.0, v_moldelta=-2.0, ‰=-1.0), (v=2.0, v_moldelta=-2.0, ‰=-1.0)] ocean.carbchem/pCO2 = [0.0019792560241649404, 0.0009740973106887919, 0.0009602445515261407] ocean.rho_ref = [1027.0, 1027.0, 1027.0] ocean.volume_total = [4132.195445201774] ocean.zupper = [0.0, 0.0, 0.0] ocean.TB_conc = [0.4269239, 0.4269239, 0.4269239] ocean.TAlk_conc = [2.0, 2.0, 2.0] ocean.Ca_conc = [10.562253082772667, 10.562253082772667, 10.562253082772667] ocean.temp = [294.65, 275.65, 275.65] ocean.carbchem/OmegaCA = [0.9455726090191425, 0.7914820720276037, 0.5257976074964462] ocean.carbchem/OmegaAR = [0.6173652892259865, 0.49916687210824134, 0.3388392963157649] ocean.sal = [35.0, 35.0, 35.0] ocean.TAlk_total = [8264.390890403549] ocean.pressure = [50.0, 125.0, 1891.0977226008872] ocean.Abox = [1.0, 1.0, 1.0] ocean.carbchem/xCO2dryinp = [0.002029615210265345, 0.000981038758804756, 0.0009670872844440077] ocean.volume = [100.0, 250.0, 3782.1954452017744] ocean.TF_conc = [0.0701706373599532, 0.0701706373599532, 0.0701706373599532] ocean.pHtot = [7.3540128696428155, 7.602021505763418, 7.525099896712385] ocean.DIC_delta = [-1.0, -1.0, -1.0] ocean.H_conc = [3.6454564827576414e-5, 2.3134505128952855e-5, 2.796629957648747e-5] ocean.DIC_total = PALEOboxes.IsotopeLinear{Float64, Float64}[(v=8264.390890403549, v_moldelta=-8264.390890403549, ‰=-1.0)] ocean.zlower = [-100.0, -250.0, -3782.1954452017744] ocean.carbchem/CO3 = [0.040847170229903265, 0.03488335451323758, 0.033119417878596735] =========================================================== integrate to approx steady state with solver integrate =========================================================== poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48479.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x75e70bf75306) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _atexit at ./initdefs.jl:454 jfptr__atexit_69637.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2725.35s: test duration exceeded the time limit