Package evaluation to test LAMMPS on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T20:41:48.149 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.25s ################################################################################ # Installation # Installing LAMMPS... Resolving package versions... Installed LAMMPS ─ v0.10.0 Updating `~/.julia/environments/v1.11/Project.toml` [ee2e13b9] + LAMMPS v0.10.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [8ce10254] + Bumper v0.7.1 [fa961155] + CEnum v0.5.0 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [ffbed154] + DocStringExtensions v0.9.5 [692b3bcd] + JLLWrappers v1.7.1 [ee2e13b9] + LAMMPS v0.10.0 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [eebad327] + PkgVersion v0.3.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [c4a57d5a] + UnsafeArrays v1.0.8 [4ee394cb] + CUDA_Driver_jll v13.0.2+0 [76a88914] + CUDA_Runtime_jll v0.19.2+0 [f5851436] + FFTW_jll v3.3.11+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [5b3ab26d] + LAMMPS_jll v2.9.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 15.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 56.1s ################################################################################ # Testing # Testing LAMMPS Status `/tmp/jl_HCAVSx/Project.toml` [47edcb42] ADTypes v1.18.0 [7da242da] Enzyme v0.13.93 [f6369f11] ForwardDiff v1.2.2 [ee2e13b9] LAMMPS v0.10.0 [da04e1cc] MPI v0.20.23 [90137ffa] StaticArrays v1.9.15 [c4a57d5a] UnsafeArrays v1.0.8 [8dfed614] Test v1.11.0 Status `/tmp/jl_HCAVSx/Manifest.toml` [47edcb42] ADTypes v1.18.0 [8ce10254] Bumper v0.7.1 [fa961155] CEnum v0.5.0 [bbf7d656] CommonSubexpressions v0.3.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [ffbed154] DocStringExtensions v0.9.5 [7da242da] Enzyme v0.13.93 [f151be2c] EnzymeCore v0.8.15 [e2ba6199] ExprTools v0.1.10 [f6369f11] ForwardDiff v1.2.2 [61eb1bfa] GPUCompiler v1.7.2 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [ee2e13b9] LAMMPS v0.10.0 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.5.0 [eebad327] PkgVersion v0.3.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.3.0 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [53d494c1] StructIO v0.3.1 [e689c965] Tracy v0.1.6 [c4a57d5a] UnsafeArrays v1.0.8 [4ee394cb] CUDA_Driver_jll v13.0.2+0 [76a88914] CUDA_Runtime_jll v0.19.2+0 [7cc45869] Enzyme_jll v0.0.205+0 [f5851436] FFTW_jll v3.3.11+0 [e33a78d0] Hwloc_jll v2.12.2+0 [5b3ab26d] LAMMPS_jll v2.9.0+0 [dad2f222] LLVMExtra_jll v0.0.38+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [ad6e5548] LibTracyClient_jll v0.9.1+6 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... LAMMPS (12 Jun 2025) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) using 1 OpenMP thread(s) per MPI task ERROR: Invalid command-line argument: -nonesense (src/lammps.cpp:486) LAMMPS Exception: ERROR: Invalid command-line argument: -nonesense (src/lammps.cpp:486) Test Summary: | Pass Total Time Extract Setting/Global | 4 4 0.5s Test Summary: | Pass Total Time Extract Atom | 7 7 0.6s Total wall time: 0:00:04 Test Summary: | Pass Total Time Variables | 10 10 2.6s Test Summary: | Pass Total Time gather/scatter | 22 22 4.2s Test Summary: | Pass Total Time Gather bonds/angles/dihedrals/impropers | 6 6 0.9s Test Summary: | Pass Total Time Extract Compute | 6 6 0.7s Test Summary: | Pass Total Time Utilities | 10 10 1.5s Test Summary: | Pass Total Time Create Atoms | 8 8 6.5s Test Summary: | Pass Total Time Custom Properties | 9 9 0.4s Test Summary: | Pass Total Time Image Flags | 3 3 0.1s Test Summary: | Pass Total Time Extract Box | 11 11 0.5s Test Summary: | Pass Total Time Neighbor lists | 4 4 0.2s Precompiling DifferentiationInterfaceForwardDiffExt... 1684.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 22 already precompiled. Precompiling EnzymeLogExpFunctionsExt... 76403.7 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 1 dependency successfully precompiled in 77 seconds. 48 already precompiled. Precompiling EnzymeSpecialFunctionsExt... 80572.2 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 1 dependency successfully precompiled in 81 seconds. 53 already precompiled. Precompiling EnzymeStaticArraysExt... 81605.4 ms ✓ Enzyme → EnzymeStaticArraysExt 1 dependency successfully precompiled in 82 seconds. 47 already precompiled. Precompiling DifferentiationInterfaceEnzymeExt... 84627.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceEnzymeExt 1 dependency successfully precompiled in 85 seconds. 49 already precompiled. Test Summary: | Pass Total Time external_pair_lj | 20 20 15.3s Test Summary: | Pass Total Time external_pair_coul | 20 20 1.4s PrecompilingPrecompiling LAMMPS... LAMMPS... LAMMPS_jll Being precompiled by another process (pid: 420, pidfile: /home/pkgeval/.julia/compiled/v1.11/LAMMPS_jll/MalPX_eJM3J.ji.pidfile) 8919.9 ms ✓ LAMMPS_jll 9408.6 ms ✓ LAMMPS_jll LAMMPS Being precompiled by another process (pid: 420, pidfile: /home/pkgeval/.julia/compiled/v1.11/LAMMPS/uvNJl_eJM3J.ji.pidfile) 12025.7 ms ✓ LAMMPS 2 dependencies successfully precompiled in 23 seconds. 56 already precompiled. 12419.9 ms ✓ LAMMPS 2 dependencies successfully precompiled in 24 seconds. 56 already precompiled. Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7ffda79664c0) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, LAMMPS-primary-njjfyOry (errno 1) MPI: Test Failed at /home/pkgeval/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:484 Expression: success(pipeline(`$(MPI.mpiexec()) -n 2 $(Base.julia_cmd()) mpitest.jl`, stderr = stderr, stdout = stdout)) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:484 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [4] top-level scope @ ~/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:484 Test Summary: | Fail Total Time MPI | 1 1 51.8s ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:482 Testing failed after 569.66s ERROR: LoadError: Package LAMMPS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 711.74s: package has test failures