Package evaluation to test GraphNeuralNetworks on Julia 1.11.7 (58327cce5e*) started at 2025-10-29T08:55:57.644 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.38s ################################################################################ # Installation # Installing GraphNeuralNetworks... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [cffab07f] + GraphNeuralNetworks v1.0.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [a963bdd2] + AtomsBase v0.5.2 ⌅ [ab4f0b2a] + BFloat16s v0.5.1 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [46823bd8] + Chemfiles v0.10.43 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [f151be2c] + EnzymeCore v0.8.15 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [587475ba] + Flux v0.16.5 [f6369f11] + ForwardDiff v1.2.2 [d9f16b24] + Functors v0.5.2 [aed8fd31] + GNNGraphs v1.4.2 [a6a84749] + GNNlib v1.0.1 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [c27321d9] + Glob v1.3.1 [cffab07f] + GraphNeuralNetworks v1.0.0 [86223c79] + Graphs v1.13.1 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.15 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [4e3cecfd] + ImageShow v0.3.8 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [7d512f48] + InternedStrings v0.7.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.38 ⌅ [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [23992714] + MAT v0.10.7 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.14.0 [eb30cadb] + MLDatasets v0.7.18 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [872c559c] + NNlib v0.9.31 [15e1cf62] + NPZ v0.4.3 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.22 [6fe1bfb0] + OffsetArrays v1.17.0 [0b1bfda6] + OneHotArrays v0.2.10 [4d8831e6] + OpenSSL v1.5.0 [3bd65402] + Optimisers v0.4.6 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [fbb45041] + Pickle v0.3.6 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v3.1.0 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [431bcebd] + SciMLPublic v1.0.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4db3bf67] + StridedViews v0.4.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.25.1 [a7773ee8] + UnitfulAtomic v1.0.0 [013be700] + UnsafeAtomics v0.3.0 [409d34a3] + VectorInterface v0.5.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [78a364fa] + Chemfiles_jll v0.10.4+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 57.3s ################################################################################ # Testing # Testing GraphNeuralNetworks ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924 Status `/tmp/jl_VfbkOf/Project.toml` [cdddcdb0] ChainRulesTestUtils v1.13.1 [26cc04aa] FiniteDifferences v0.12.33 [587475ba] Flux v0.16.5 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 [a6a84749] GNNlib v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [cffab07f] GraphNeuralNetworks v1.0.0 [86223c79] Graphs v1.13.1 [eb30cadb] MLDatasets v0.7.18 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [e88e6eb3] Zygote v0.7.10 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VfbkOf/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.2 [a963bdd2] AtomsBase v0.5.2 ⌅ [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [cdddcdb0] ChainRulesTestUtils v1.13.1 [46823bd8] Chemfiles v0.10.43 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [f151be2c] EnzymeCore v0.8.15 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [53c48c17] FixedPointNumbers v0.8.5 [587475ba] Flux v0.16.5 [f6369f11] ForwardDiff v1.2.2 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 [a6a84749] GNNlib v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [92fee26a] GZip v0.6.2 [c27321d9] Glob v1.3.1 [cffab07f] GraphNeuralNetworks v1.0.0 [86223c79] Graphs v1.13.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.15 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [7d512f48] InternedStrings v0.7.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.38 ⌅ [0b1a1467] KrylovKit v0.9.5 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [23992714] MAT v0.10.7 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.14.0 [eb30cadb] MLDatasets v0.7.18 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [739be429] MbedTLS v1.1.9 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [872c559c] NNlib v0.9.31 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.22 [6fe1bfb0] OffsetArrays v1.17.0 [0b1bfda6] OneHotArrays v0.2.10 [4d8831e6] OpenSSL v1.5.0 [3bd65402] Optimisers v0.4.6 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [fbb45041] Pickle v0.3.6 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v3.1.0 [33c8b6b6] ProgressLogging v0.1.5 [43287f4e] PtrArrays v1.3.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [431bcebd] SciMLPublic v1.0.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 ⌃ [09ab397b] StructArrays v0.6.18 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.25.1 [a7773ee8] UnitfulAtomic v1.0.0 [013be700] UnsafeAtomics v0.3.0 [409d34a3] VectorInterface v0.5.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [78a364fa] Chemfiles_jll v0.10.4+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling MLDatasets... 2156.5 ms ✓ Accessors → UnitfulExt 5527.4 ms ✓ AtomsBase 4629.2 ms ✓ Pickle 86217.6 ms ✓ DataFrames 52938.4 ms ✓ JLD2 5823.6 ms ✓ Chemfiles 7026.9 ms ✓ BangBang → BangBangDataFramesExt 7241.1 ms ✓ Transducers → TransducersDataFramesExt 55443.0 ms ✓ MLDatasets 9 dependencies successfully precompiled in 234 seconds. 201 already precompiled. layer = "GCNConv" 198.422376 seconds (82.37 M allocations: 4.048 GiB, 0.69% gc time, 99.65% compilation time) 280.980632 seconds (110.95 M allocations: 5.573 GiB, 0.86% gc time, 99.55% compilation time: <1% of which was recompilation) layer = "ResGatedGraphConv" 50.142730 seconds (25.66 M allocations: 2.935 GiB, 4.80% gc time, 87.30% compilation time) 60.043361 seconds (27.57 M allocations: 3.162 GiB, 4.09% gc time, 88.64% compilation time) layer = "GraphConv" 26.848850 seconds (10.84 M allocations: 3.992 GiB, 10.29% gc time, 54.20% compilation time) 34.498239 seconds (12.34 M allocations: 4.474 GiB, 9.79% gc time, 61.34% compilation time) layer = "SAGEConv" 19.518812 seconds (6.41 M allocations: 4.373 GiB, 16.60% gc time, 30.08% compilation time) 24.223048 seconds (7.48 M allocations: 4.889 GiB, 14.01% gc time, 38.96% compilation time) layer = "GATConv" 416.331727 seconds (32.59 M allocations: 2.857 GiB, 0.60% gc time, 98.74% compilation time) 486.878566 seconds (36.11 M allocations: 3.200 GiB, 0.64% gc time, 98.72% compilation time) layer = "GINConv" 28.068315 seconds (8.87 M allocations: 4.158 GiB, 13.99% gc time, 52.78% compilation time) 34.620552 seconds (10.92 M allocations: 4.689 GiB, 13.07% gc time, 56.93% compilation time) layer = "TransformerConv" 81.102428 seconds (39.14 M allocations: 4.347 GiB, 4.17% gc time, 87.11% compilation time) 123.132265 seconds (41.56 M allocations: 4.723 GiB, 2.84% gc time, 90.89% compilation time) Precompiling ChainRulesTestUtils... 13819.3 ms ✓ ChainRulesTestUtils 1 dependency successfully precompiled in 14 seconds. 25 already precompiled. ┌ Warning: inference tests have been disabled └ @ ChainRulesTestUtils ~/.julia/packages/ChainRulesTestUtils/RZidV/src/global_config.jl:13 ┌ Warning: Layer with Float32 parameters got Float64 input. │ The input will be converted, but any earlier layers may be very slow. │ layer = Dense(4 => 2) # 10 parameters │ summary(x) = "4×3 Matrix{Float64}" └ @ Flux ~/.julia/packages/Flux/uRn8o/src/layers/stateless.jl:60 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 143 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm10BasicBlock13getTerminatorEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm8childrenIPNS_10BasicBlockEEENS_14iterator_rangeINS_11GraphTraitsIT_E17ChildIteratorTypeEEERKNS6_7NodeRefE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm14DomTreeBuilder11SemiNCAInfoINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEE11getChildrenILb0EEENS_11SmallVectorIPS3_Lj8EEES8_PNS5_15BatchUpdateInfoE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm14DomTreeBuilder11SemiNCAInfoINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEE18verifyReachabilityERKS4_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm14DomTreeBuilder6VerifyINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEEEbRKT_NS5_17VerificationLevelE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL28unswitchNontrivialInvariantsRN4llvm4LoopERNS_11InstructionENS_8ArrayRefIPNS_5ValueEEERNS_15IVConditionInfoERNS_13DominatorTreeERNS_8LoopInfoERNS_15AssumptionCacheENS_12function_refIFvbbNS4_IPS0_EEEEEPNS_15ScalarEvolutionEPNS_16MemorySSAUpdaterENSG_IFvS1_NS_9StringRefEEEEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL21unswitchBestConditionRN4llvm4LoopERNS_13DominatorTreeERNS_8LoopInfoERNS_15AssumptionCacheERNS_9AAResultsERNS_19TargetTransformInfoENS_12function_refIFvbbNS_8ArrayRefIPS0_EEEEEPNS_15ScalarEvolutionEPNS_16MemorySSAUpdaterENSC_IFvS1_NS_9StringRefEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm22SimpleLoopUnswitchPass3runERNS_4LoopERNS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEES5_RNS_10LPMUpdaterE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:517 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 jl_add_to_ee at /source/src/jitlayers.cpp:2285 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2538 [inlined] jl_compile_method_internal at /source/src/gf.c:2425 _jl_invoke at /source/src/gf.c:2943 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #14 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:91 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #11 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:142 unknown function (ip: 0x74f153504ef2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 finitediff_withgradient at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:61 unknown function (ip: 0x74f156c3df66) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test_gradients#6 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:142 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 test_gradients at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:82 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 include_string at ./loading.jl:2785 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #8 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x74f15c33b106) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x74f15c33a80e) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #run_tests#13 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2835 include at ./sysimg.jl:38 unknown function (ip: 0x74f172f00082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:289 _start at ./client.jl:524 jfptr__start_73678.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74f1744f1249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x74ebac970222) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x74ebac95d4cd) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x74ebac951a56) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x74ebac95175d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x74ebac95113d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x74ebac94d5d6) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2835 include at ./Base.jl:562 jfptr_include_47022.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 exec_options at ./client.jl:316 _start at ./client.jl:524 jfptr__start_73678.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74ebade34249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000074eba0ffc010 Total snapshots: 30. Utilization: 0% ╎30 @Base/client.jl:524; _start() ╎ 30 @Base/client.jl:316; exec_options(opts::Base.JLOptions) ╎ 30 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 30 @Base/loading.jl:2835; _include(mapexpr::Function, mod::Module, _path:… ╎ 30 @Base/loading.jl:2775; include_string(mapexpr::typeof(identity), mod:… ╎ 30 @Base/boot.jl:430; eval ╎ ╎ 30 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 30 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 30 @Pkg/src/API.jl:147; test ╎ ╎ 30 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 30 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 30 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 30 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 30 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 30 …src/Operations.jl:2011; test ╎ ╎ ╎ 30 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 30 …rc/Operations.jl:1841; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 30 …rc/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 30 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 30 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 30 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 30 …/Operations.jl:1902; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 30 …/Operations.jl:1793; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 30 …Operations.jl:1935; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 30 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 30 …Operations.jl:2086; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 30 …perations.jl:2146; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 30 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 30 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 30 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 30 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 30 …ase/task.jl:1021; wait() 29╎ ╎ ╎ ╎ ╎ ╎ ╎ 30 …ase/task.jl:1012; poptask(W::Base.Intrus… [143] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/layers/temporalconv.jl:82 == at ./float.jl:616 [inlined] iszero at ./number.jl:42 [inlined] scale at /home/pkgeval/.julia/packages/VectorInterface/J6qCR/src/number.jl:16 [inlined] Fix2 at ./operators.jl:1144 [inlined] iterate at ./generator.jl:48 [inlined] _collect at ./array.jl:811 collect_similar at ./array.jl:720 [inlined] map at ./abstractarray.jl:3371 [inlined] scale at /home/pkgeval/.julia/packages/VectorInterface/J6qCR/src/abstractarray.jl:39 [inlined] #56 at ./none:0 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:849 [inlined] collect_to_with_first! at ./array.jl:827 [inlined] collect at ./array.jl:801 #eigsolve#54 at /home/pkgeval/.julia/packages/KrylovKit/jC5gU/src/eigsolve/lanczos.jl:131 eigsolve at /home/pkgeval/.julia/packages/KrylovKit/jC5gU/src/eigsolve/lanczos.jl:1 [inlined] #eigsolve#51 at /home/pkgeval/.julia/packages/KrylovKit/jC5gU/src/eigsolve/eigsolve.jl:223 [inlined] eigsolve at /home/pkgeval/.julia/packages/KrylovKit/jC5gU/src/eigsolve/eigsolve.jl:197 [inlined] _eigmax at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:492 unknown function (ip: 0x74f1541f28cf) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #scaled_laplacian#106 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:485 scaled_laplacian at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:482 [inlined] cheb_conv at /home/pkgeval/.julia/packages/GNNlib/StdFP/src/layers/conv.jl:87 ChebConv at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/conv.jl:178 [inlined] GConvLSTMCell at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:425 scan at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:4 GNNRecurrence at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:134 unknown function (ip: 0x74f15351bb0e) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #14 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:91 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #11 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:142 #92 at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:77 #75 at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:20 #11 at ./broadcast.jl:353 [inlined] macro expansion at /home/pkgeval/.julia/packages/StaticArrays/DsPgf/src/broadcast.jl:135 [inlined] __broadcast at /home/pkgeval/.julia/packages/StaticArrays/DsPgf/src/broadcast.jl:123 [inlined] _broadcast at /home/pkgeval/.julia/packages/StaticArrays/DsPgf/src/broadcast.jl:119 [inlined] copy at /home/pkgeval/.julia/packages/StaticArrays/DsPgf/src/broadcast.jl:60 [inlined] materialize at ./broadcast.jl:872 [inlined] _eval_function at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/methods.jl:249 _estimate_magnitudes at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/methods.jl:386 estimate_step at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/methods.jl:365 AdaptedFiniteDifferenceMethod at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/methods.jl:193 #74 at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:16 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:849 collect_to_with_first! at ./array.jl:827 unknown function (ip: 0x74f15351f0d5) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _collect at ./array.jl:821 collect_similar at ./array.jl:720 [inlined] map at ./abstractarray.jl:3371 [inlined] #jacobian#73 at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:15 unknown function (ip: 0x74f15351e05e) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jacobian at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:9 _j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:84 j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:77 [inlined] grad at /home/pkgeval/.julia/packages/FiniteDifferences/tX3T3/src/grad.jl:94 unknown function (ip: 0x74f156c4093d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 finitediff_withgradient at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:64 unknown function (ip: 0x74f156c3df66) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test_gradients#6 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:142 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 test_gradients at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:82 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2775 include_string at ./loading.jl:2785 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #8 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x74f15c33b106) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x74f15c33a80e) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #run_tests#13 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 PkgEval terminated after 2724.05s: test duration exceeded the time limit