Package evaluation to test GalerkinToolkit on Julia 1.11.7 (58327cce5e*) started at 2025-10-29T04:48:33.643


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.74s


################################################################################
# Installation
#

Installing GalerkinToolkit...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [5e3ba9c4] + GalerkinToolkit v0.5.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [4c555306] + ArrayLayouts v1.12.0
  [15f4f7f2] + AutoHashEquals v2.2.0
  [8e7c35d0] + BlockArrays v1.9.0
  [fa961155] + CEnum v0.5.0
  [7a955b69] + CircularArrays v1.4.0
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
⌅ [864edb3b] + DataStructures v0.18.22
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.9
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.5
  [e2ba6199] + ExprTools v0.1.10
  [442a2c76] + FastGaussQuadrature v1.1.0
  [1a297f60] + FillArrays v1.14.0
  [6a86dc24] + FiniteDiff v2.29.0
  [f6369f11] + ForwardDiff v1.2.2
  [5e3ba9c4] + GalerkinToolkit v0.5.0
  [705231aa] + Gmsh v0.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [42fd0dbc] + IterativeSolvers v0.9.4
  [692b3bcd] + JLLWrappers v1.7.1
  [d3d80556] + LineSearches v7.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [da04e1cc] + MPI v0.20.23
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [e9d8d322] + Metatheory v2.0.2
  [2679e427] + Metis v1.5.0
  [d41bc354] + NLSolversBase v7.10.0
  [2774e3e8] + NLsolve v4.5.1
  [77ba4419] + NaNMath v1.1.3
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [d96e819e] + Parameters v0.12.3
  [5a9dfac6] + PartitionedArrays v0.5.14
  [11b65f7f] + PartitionedSolvers v0.3.3
  [eebad327] + PkgVersion v0.3.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.5.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [efcf1570] + Setfield v1.1.2
  [a0a7dd2c] + SparseMatricesCSR v0.6.9
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [8ea1fca8] + TermInterface v0.3.3
  [a759f4b9] + TimerOutputs v0.5.29
  [3a884ed6] + UnPack v1.0.2
  [6e34b625] + Bzip2_jll v1.0.9+0
  [83423d85] + Cairo_jll v1.18.5+0
  [2e619515] + Expat_jll v2.7.3+0
  [4fce6fc7] + FLTK_jll v1.3.8+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [bd17208b] + GLU_jll v9.0.1+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [7746bdde] + Glib_jll v2.86.0+0
⌅ [0234f1f7] + HDF5_jll v1.14.3+3
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [aacddb02] + JpegTurbo_jll v3.1.3+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
  [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [18c40d15] + LinearElasticity_jll v5.0.0+0
  [d00139f3] + METIS_jll v5.1.3+0
  [86086c02] + MMG_jll v5.6.0+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [baad4e97] + OCCT_jll v7.7.2+0
⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
⌅ [30392449] + Pixman_jll v0.44.2+0
⌅ [a8d0f55d] + SCOTCH_jll v6.1.3+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0
  [2c808117] + Xorg_libXft_jll v2.3.9+0
  [d1454406] + Xorg_libXinerama_jll v1.1.6+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [630162c2] + gmsh_jll v4.13.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [b53b4c65] + libpng_jll v1.6.50+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [781609d7] + GMP_jll v6.3.0+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [efcefdf7] + PCRE2_jll v10.42.0+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 10.5s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 39 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#818 at ./asyncevent.jl:311
jfptr_YY.818_67279.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007cdcf3a379e0 Total snapshots: 448. Utilization: 0%
   ╎448 @Base/asyncevent.jl:311; (::Base.var"#818#819"{FileWatching.Pidfile.var…
   ╎ 448 @Base/asyncevent.jl:145; _trywait(t::Timer)
   ╎  448 @Base/condition.jl:125; wait
   ╎   448 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    448 @Base/task.jl:1021; wait()
447╎     448 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
task_done_hook at ./task.jl:694
jfptr_task_done_hook_66679.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
jl_finish_task at /source/src/task.c:319
start_task at /source/src/task.c:1213
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007869afcc6ef0 Total snapshots: 478. Utilization: 0%
   ╎478 @Base/task.jl:694; task_done_hook(t::Task)
   ╎ 478 @Base/task.jl:1021; wait()
477╎  478 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T…


[39] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:152
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
poptask at ./task.jl:1012
wait at ./task.jl:1021
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
profile_printing_listener at ./Base.jl:582
#818 at ./asyncevent.jl:311
jfptr_YY.818_67279.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))
Allocations: 50123043 (Pool: 50120667; Big: 2376); GC: 51
#1192 at ./Base.jl:622
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
jfptr_YY.1192_76252.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))
Allocations: 15240050 (Pool: 15238185; Big: 1865); GC: 14
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
error at ./error.jl:35
#schedule#763 at ./task.jl:884
error at ./error.jl:35
schedule at ./task.jl:876 [inlined]
uv_writecb_task at ./stream.jl:1200
#schedule#763 at ./task.jl:884
schedule at ./task.jl:876 [inlined]
jfptr_uv_writecb_task_67129.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
uv_writecb_task at ./stream.jl:1200
jfptr_uv_writecb_task_67129.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jlcapi_uv_writecb_task_67593.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420
ijl_task_get_next at /source/src/scheduler.c:522
jlcapi_uv_writecb_task_67593.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227
poptask at ./task.jl:1012
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420
ijl_task_get_next at /source/src/scheduler.c:522
wait at ./task.jl:1021
poptask at ./task.jl:1012
wait at ./task.jl:1021
uv_write at ./stream.jl:1081
uv_write at ./stream.jl:1081
unsafe_write at ./stream.jl:1154
unsafe_write at ./stream.jl:1154
write at ./strings/io.jl:248 [inlined]
print at ./strings/io.jl:250
write at ./strings/io.jl:248 [inlined]
print at ./strings/io.jl:250
jfptr_print_48479.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
showerror at ./errorshow.jl:152
unknown function (ip: 0x7cdd1bede436)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
_atexit at ./initdefs.jl:454
jfptr_print_48479.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
showerror at ./errorshow.jl:152
unknown function (ip: 0x7869b93576f6)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jfptr__atexit_69637.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
_atexit at ./initdefs.jl:454
jl_apply at /source/src/julia.h:2157 [inlined]
ijl_atexit_hook at /source/src/init.c:271
jl_exit_thread0_cb at /source/src/signals-unix.c:517
jfptr__atexit_69637.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
ijl_atexit_hook at /source/src/init.c:271
jl_exit_thread0_cb at /source/src/signals-unix.c:517

PkgEval terminated after 2753.61s: test duration exceeded the time limit