Package evaluation to test FlxQTL on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T21:02:25.029


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.71s


################################################################################
# Installation
#

Installing FlxQTL...
   Resolving package versions...
   Installed FlxQTL ─ v3.0.0
    Updating `~/.julia/environments/v1.11/Project.toml`
  [ede81e08] + FlxQTL v3.0.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.1
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.14.0
  [ede81e08] + FlxQTL v3.0.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [30fc2ffe] + LossFunctions v1.1.1
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.7
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 9.42s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 24.33s


################################################################################
# Testing
#

     Testing FlxQTL
      Status `/tmp/jl_NiYtl9/Project.toml`
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.122
  [ede81e08] FlxQTL v3.0.0
  [30fc2ffe] LossFunctions v1.1.1
  [90137ffa] StaticArrays v1.9.15
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.7
  [8ba89e20] Distributed v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_NiYtl9/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.1
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.14.0
  [ede81e08] FlxQTL v3.0.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [30fc2ffe] LossFunctions v1.1.1
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.36
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.5.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.7
  [4c63d2b9] StatsFuns v1.5.2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [8e850b90] libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Positive definiteness dropping chromosome 1 is true.
Positive definiteness dropping chromosome 2 is true.
Test Passed
Test Passed
Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Test Passed
Test Passed
Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Test Passed
Test Passed
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedKinship dropping chromosome 1 is corrected to be positive definite
Kinship dropping chromosome 2 is corrected to be positive definite
  0.148800 seconds (356.12 k allocations: 31.808 MiB, 42.78% gc time)
  0.001668 seconds (7.37 k allocations: 630.453 KiB)
  0.102339 seconds (356.12 k allocations: 31.808 MiB, 16.67% gc time)
  0.001490 seconds (7.10 k allocations: 604.828 KiB)
  0.005913 seconds (28.99 k allocations: 2.605 MiB)
  0.037071 seconds (168.01 k allocations: 13.867 MiB, 14.97% gc time)
  0.006437 seconds (28.99 k allocations: 2.605 MiB)
  0.056437 seconds (236.31 k allocations: 19.509 MiB, 18.34% gc time)
  0.006324 seconds (28.98 k allocations: 2.605 MiB)
  0.030625 seconds (118.10 k allocations: 9.787 MiB, 20.51% gc time)
  0.006276 seconds (28.98 k allocations: 2.605 MiB)
  0.021631 seconds (113.13 k allocations: 9.373 MiB)
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed 14.966246 seconds (45.80 M allocations: 6.941 GiB, 4.96% gc time)
  0.023220 seconds (79.79 k allocations: 11.538 MiB)
 15.139571 seconds (45.80 M allocations: 6.942 GiB, 4.68% gc time)
 15.030766 seconds (45.80 M allocations: 6.942 GiB, 4.55% gc time)
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed
Test Passed
 10.063672 seconds (29.30 M allocations: 4.476 GiB, 6.34% gc time)
  0.821401 seconds (2.62 M allocations: 368.441 MiB, 5.67% gc time)
  7.656979 seconds (22.49 M allocations: 3.409 GiB, 6.64% gc time)
 43.545602 seconds (139.51 M allocations: 19.000 GiB, 6.15% gc time)
  7.729584 seconds (22.49 M allocations: 3.410 GiB, 6.59% gc time)
 43.487368 seconds (139.51 M allocations: 19.000 GiB, 6.12% gc time)
  8.059679 seconds (22.49 M allocations: 3.410 GiB, 9.82% gc time)
 42.861548 seconds (139.51 M allocations: 19.000 GiB, 5.28% gc time)
  9.800625 seconds (29.30 M allocations: 4.477 GiB, 5.34% gc time)
  0.814571 seconds (2.62 M allocations: 368.440 MiB, 4.97% gc time)
 10.139479 seconds (29.30 M allocations: 4.477 GiB, 5.38% gc time)
  0.822299 seconds (2.62 M allocations: 368.441 MiB, 5.10% gc time)
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
  7.650701 seconds (22.49 M allocations: 3.409 GiB, 5.78% gc time)
 38.283815 seconds (122.17 M allocations: 16.795 GiB, 5.39% gc time)
  7.555382 seconds (22.49 M allocations: 3.410 GiB, 5.83% gc time)
  7.507984 seconds (22.49 M allocations: 3.410 GiB, 5.63% gc time)
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Summary: | Pass  Total      Time
FlxQTL.jl     |  244    244  25m31.4s
     Testing FlxQTL tests passed 

Testing completed after 1439.62s

PkgEval succeeded after 1598.08s