Package evaluation to test Dynesty on Julia 1.11.7 (58327cce5e*) started at 2025-10-28T20:51:39.926 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.68s ################################################################################ # Installation # Installing Dynesty... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [eb527566] + Dynesty v0.4.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [992eb4ea] + CondaPkg v0.2.33 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [eb527566] + Dynesty v0.4.0 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.28 [6c6a2e73] + Scratch v1.3.0 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 75.35s ################################################################################ # Testing # Testing Dynesty Status `/tmp/jl_XY4Gh1/Project.toml` [31c24e10] Distributions v0.25.122 [eb527566] Dynesty v0.4.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XY4Gh1/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [992eb4ea] CondaPkg v0.2.33 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [eb527566] Dynesty v0.4.0 [1a297f60] FillArrays v1.14.0 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.28 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e17b2a0c] UnsafePointers v1.0.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/mkWc2/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/Dynesty/wAgXI/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Resolving changes + dynesty + libstdcxx + libstdcxx-ng + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_XY4Gh1/.CondaPkg ✔ Created /tmp/jl_XY4Gh1/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_XY4Gh1/.CondaPkg/pixi.toml │ [dependencies] │ libstdcxx = ">=3.4,<14.0" │ libstdcxx-ng = ">=3.4,<14.0" │ dynesty = ">=2.1" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.9,<4, >=3.6,<=3.10" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_XY4Gh1/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling Distributions... 5282.9 ms ✓ SpecialFunctions 2151.9 ms ✓ HypergeometricFunctions 3171.6 ms ✓ StatsFuns 9000.0 ms ✓ Distributions 4 dependencies successfully precompiled in 21 seconds. 37 already precompiled. Precompiling DistributionsTestExt... 3409.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 4 seconds. 46 already precompiled. ┌ Warning: `MvNormal(σ::AbstractVector{<:Real})` is deprecated, use `MvNormal(LinearAlgebra.Diagonal(map(abs2, σ)))` instead. │ caller = ip:0x0 └ @ Core :-1 Dynesty.jl: Error During Test at /home/pkgeval/.julia/packages/Dynesty/wAgXI/test/runtests.jl:5 Got exception outside of a @test Python: TypeError: NestedSampler.__new__() got an unexpected keyword argument 'gradient' Python stacktrace: none Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/mkWc2/src/Core/err.jl:77 [2] errcheck @ ~/.julia/packages/PythonCall/mkWc2/src/Core/err.jl:10 [inlined] [3] pycallargs(f::PythonCall.Py, args::PythonCall.Py, kwargs::PythonCall.Py) @ PythonCall.Core ~/.julia/packages/PythonCall/mkWc2/src/Core/builtins.jl:195 [4] pycall(::PythonCall.Py, ::Function, ::Vararg{Any}; kwargs::@Kwargs{nlive::Int64, bound::String, sample::String, periodic::Nothing, reflective::Nothing, update_interval::Float64, first_update::Nothing, gradient::Nothing, walks::Int64, facc::Float64, slices::Int64, fmove::Float64, max_move::Int64}) @ PythonCall.Core ~/.julia/packages/PythonCall/mkWc2/src/Core/builtins.jl:207 [5] (::PythonCall.Py)(::Function, ::Vararg{Any}; kwargs::@Kwargs{nlive::Int64, bound::String, sample::String, periodic::Nothing, reflective::Nothing, update_interval::Float64, first_update::Nothing, gradient::Nothing, walks::Int64, facc::Float64, slices::Int64, fmove::Float64, max_move::Int64}) @ PythonCall.Core ~/.julia/packages/PythonCall/mkWc2/src/Core/Py.jl:334 [6] dysample(loglikelihood::Function, prior_transform::Function, ndim::Int64, s::NestedSampler; kwargs::@Kwargs{dlogz::Float64, print_progress::Bool}) @ Dynesty ~/.julia/packages/Dynesty/wAgXI/src/Dynesty.jl:149 [7] macro expansion @ ~/.julia/packages/Dynesty/wAgXI/test/runtests.jl:17 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [9] top-level scope @ ~/.julia/packages/Dynesty/wAgXI/test/runtests.jl:8 [10] include(fname::String) @ Main ./sysimg.jl:38 [11] top-level scope @ none:6 Test Summary: | Error Total Time Dynesty.jl | 1 1 10.3s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Dynesty/wAgXI/test/runtests.jl:5 Testing failed after 98.3s ERROR: LoadError: Package Dynesty errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 202.56s: package tests unexpectedly errored