Package evaluation to test BiochemicalAlgorithms on Julia 1.11.7 (58327cce5e*) started at 2025-10-29T06:40:33.307 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.37s ################################################################################ # Installation # Installing BiochemicalAlgorithms... Resolving package versions... Installed Libmount_jll ──────────────── v2.41.2+0 Installed ConsoleProgressMonitor ────── v0.1.2 Installed LoggingExtras ─────────────── v1.2.0 Installed Accessors ─────────────────── v0.1.42 Installed Preferences ───────────────── v1.5.0 Installed SciMLPublic ───────────────── v1.0.0 Installed Calculus ──────────────────── v0.5.2 Installed BioGenerics ───────────────── v0.1.5 Installed PDMats ────────────────────── v0.11.36 Installed ProgressMeter ─────────────── v1.11.0 Installed InlineStrings ─────────────── v1.4.5 Installed EarCut_jll ────────────────── v2.2.4+0 Installed SciMLLogging ──────────────── v1.3.1 Installed StaticArrays ──────────────── v1.9.15 Installed Unitful ───────────────────── v1.25.1 Installed Roots ─────────────────────── v2.2.10 Installed EnumX ─────────────────────── v1.0.5 Installed ScopedValues ──────────────── v1.5.0 Installed FunctionWrappers ──────────── v1.1.3 Installed DelimitedFiles ────────────── v1.9.1 Installed InvertedIndices ───────────── v1.3.1 Installed RecursiveArrayTools ───────── v3.39.0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed DataFrames ────────────────── v1.8.1 Installed Statistics ────────────────── v1.11.1 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed FileIO ────────────────────── v1.17.1 Installed Missings ──────────────────── v1.2.0 Installed MetaGraphs ────────────────── v0.8.1 Installed boost_jll ─────────────────── v1.76.0+1 Installed RealDot ───────────────────── v0.1.0 Installed AutoHashEquals ────────────── v2.2.0 Installed JLD2 ──────────────────────── v0.6.2 Installed ArnoldiMethod ─────────────── v0.4.0 Installed JSON ──────────────────────── v0.21.4 Installed Pango_jll ─────────────────── v1.56.4+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed SentinelArrays ────────────── v1.4.8 Installed ProgressLogging ───────────── v0.1.5 Installed SciMLBase ─────────────────── v2.124.0 Installed ADTypes ───────────────────── v1.18.0 Installed Mendeleev ─────────────────── v1.0.2 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed StaticArraysCore ──────────── v1.4.4 Installed NaNMath ───────────────────── v1.1.3 Installed LZO_jll ───────────────────── v2.10.3+0 Installed ChunkSplitters ────────────── v3.1.2 Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed StringEncodings ───────────── v0.3.7 Installed RDKitMinimalLib ───────────── v1.2.0 Installed BioSymbols ────────────────── v5.2.0 Installed WorkerUtilities ───────────── v1.6.1 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed TranscodingStreams ────────── v0.11.3 Installed WeakRefStrings ────────────── v1.4.2 Installed Graphics ──────────────────── v1.1.3 Installed SparseMatrixColorings ─────── v0.4.22 Installed DataStructures ────────────── v0.19.1 Installed SparseConnectivityTracer ──── v1.1.2 Installed Colors ────────────────────── v0.13.1 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed ExprTools ─────────────────── v0.1.10 Installed Compat ────────────────────── v4.18.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed MolecularGraph ────────────── v0.19.1 Installed Graphs ────────────────────── v1.13.1 Installed StructTypes ───────────────── v1.11.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed FunctionWrappersWrappers ──── v0.1.3 Installed SciMLStructures ───────────── v1.7.0 Installed JSON3 ─────────────────────── v1.14.3 Installed ColorTypes ────────────────── v0.12.1 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed TableTraits ───────────────── v1.0.1 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Inflate ───────────────────── v0.1.5 Installed ChunkCodecLibZlib ─────────── v1.0.0 Installed LBFGSB ────────────────────── v0.4.1 Installed PrettyTables ──────────────── v2.4.0 Installed Parsers ───────────────────── v2.8.3 Installed SciMLOperators ────────────── v1.9.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed Setfield ──────────────────── v1.1.2 Installed PooledArrays ──────────────── v1.4.3 Installed Format ────────────────────── v1.3.7 Installed JLLWrappers ───────────────── v1.7.1 Installed DataValueInterfaces ───────── v1.0.0 Installed ConstructionBase ──────────── v1.6.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed AbstractTrees ─────────────── v0.4.5 Installed OrderedCollections ────────── v1.8.1 Installed Measurements ──────────────── v2.14.1 Installed ExproniconLite ────────────── v0.10.14 Installed Extents ───────────────────── v0.1.6 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed FastClosures ──────────────── v0.3.2 Installed ChunkCodecCore ────────────── v1.0.0 Installed Reexport ──────────────────── v1.2.2 Installed TerminalLoggers ───────────── v0.1.7 Installed ArrayInterface ────────────── v7.22.0 Installed PreallocationTools ────────── v0.4.34 Installed Quaternions ───────────────── v0.7.6 Installed MacroTools ────────────────── v0.5.16 Installed UnPack ────────────────────── v1.0.2 Installed Rotations ─────────────────── v1.7.1 Installed CompositionsBase ──────────── v0.1.2 Installed InverseFunctions ──────────── v0.1.17 Installed CellListMap ───────────────── v0.9.14 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed CommonSolve ───────────────── v0.2.4 Installed BiochemicalAlgorithms ─────── v0.5.5 Installed SimpleTraits ──────────────── v0.9.5 Installed GPUArraysCore ─────────────── v0.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed DifferentiationInterface ──── v0.7.9 Installed Crayons ───────────────────── v4.1.1 Installed BioStructures ─────────────── v4.7.0 Installed Adapt ─────────────────────── v4.4.0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed libinchi_jll ──────────────── v1.6.0+0 Installed YAML ──────────────────────── v0.4.14 Installed IntervalSets ──────────────── v0.7.11 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed IterTools ─────────────────── v1.10.0 Installed RDKit_jll ─────────────────── v2022.9.5+0 Installed L_BFGS_B_jll ──────────────── v3.0.1+0 Installed RuntimeGeneratedFunctions ─── v0.5.15 Installed Tables ────────────────────── v1.12.1 Installed Cairo ─────────────────────── v1.1.1 Installed Jieko ─────────────────────── v0.2.1 Installed MakieCore ─────────────────── v0.9.5 Installed GeometryBasics ────────────── v0.5.10 Installed Optimization ──────────────── v4.8.0 Installed Moshi ─────────────────────── v0.3.7 Installed DataAPI ───────────────────── v1.16.0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed RecipesBase ───────────────── v1.3.4 Installed TableOperations ───────────── v1.2.0 Installed PrecompileTools ───────────── v1.2.1 Installed PhysicalConstants ─────────── v0.2.4 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Glib_jll ──────────────────── v2.86.0+0 Installed FilePathsBase ─────────────── v0.9.24 Installed FillArrays ────────────────── v1.14.0 Installed TestItems ─────────────────── v1.0.0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Requires ──────────────────── v1.3.1 Installed SymbolicIndexingInterface ─── v0.3.44 Installed UnitfulAtomic ─────────────── v1.0.0 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Parameters ────────────────── v0.12.3 Installed Observables ───────────────── v0.5.5 Installed StringManipulation ────────── v0.4.1 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed OptimizationBase ──────────── v2.14.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed CSV ───────────────────────── v0.10.15 Updating `~/.julia/environments/v1.11/Project.toml` [9d651bdf] + BiochemicalAlgorithms v0.5.5 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [15f4f7f2] + AutoHashEquals v2.2.0 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [9d651bdf] + BiochemicalAlgorithms v0.5.5 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [49dc2e85] + Calculus v0.5.2 [69e1c6dd] + CellListMap v0.9.14 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [ae650224] + ChunkSplitters v3.1.2 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [a0c0ee7d] + DifferentiationInterface v0.7.9 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [9aa1b823] + FastClosures v0.3.2 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.2 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [ae98c720] + Jieko v0.2.1 [5be7bae1] + LBFGSB v0.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [20f20a25] + MakieCore v0.9.5 [eff96d63] + Measurements v2.14.1 [c116f080] + Mendeleev v1.0.2 [626554b9] + MetaGraphs v0.8.1 [e1d29d7a] + Missings v1.2.0 ⌅ [6c89ec66] + MolecularGraph v0.19.1 [2e0e35c7] + Moshi v0.3.7 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [7f7a1694] + Optimization v4.8.0 ⌅ [bca83a33] + OptimizationBase v2.14.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [5ad8b20f] + PhysicalConstants v0.2.4 [2dfb63ee] + PooledArrays v1.4.3 [d236fae5] + PreallocationTools v0.4.34 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.11.0 [94ee1d12] + Quaternions v0.7.6 [44044271] + RDKitMinimalLib v1.2.0 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.10 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [0bca4576] + SciMLBase v2.124.0 [a6db7da4] + SciMLLogging v1.3.1 [c0aeaf25] + SciMLOperators v1.9.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.2 [0a514795] + SparseMatrixColorings v0.4.22 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [1c621080] + TestItems v1.0.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7773ee8] + UnitfulAtomic v1.0.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.14 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [e9f186c6] + Libffi_jll v3.4.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [03d1d220] + RDKit_jll v2022.9.5+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 ⌅ [28df3c45] + boost_jll v1.76.0+1 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.50+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 40.33s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3218.2 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. Precompiling package dependencies... Precompilation completed after 887.94s ################################################################################ # Testing # Testing BiochemicalAlgorithms Status `/tmp/jl_jIJy8q/Project.toml` [4c88cf16] Aqua v0.8.14 [15f4f7f2] AutoHashEquals v2.2.0 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [9d651bdf] BiochemicalAlgorithms v0.5.5 [336ed68f] CSV v0.10.15 [69e1c6dd] CellListMap v0.9.14 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.1 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [86223c79] Graphs v1.13.1 [0f8b85d8] JSON3 v1.14.3 [c116f080] Mendeleev v1.0.2 [626554b9] MetaGraphs v0.8.1 ⌅ [6c89ec66] MolecularGraph v0.19.1 [510215fc] Observables v0.5.5 ⌅ [7f7a1694] Optimization v4.8.0 [5ad8b20f] PhysicalConstants v0.2.4 ⌅ [08abe8d2] PrettyTables v2.4.0 [94ee1d12] Quaternions v0.7.6 [6038ab10] Rotations v1.7.1 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.1 [f8b46487] TestItemRunner v1.1.0 [1986cc42] Unitful v1.25.1 [a7773ee8] UnitfulAtomic v1.0.0 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jIJy8q/Manifest.toml` [47edcb42] ADTypes v1.18.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [15f4f7f2] AutoHashEquals v2.2.0 [47718e42] BioGenerics v0.1.5 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [9d651bdf] BiochemicalAlgorithms v0.5.5 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [49dc2e85] Calculus v0.5.2 [69e1c6dd] CellListMap v0.9.14 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [ae650224] ChunkSplitters v3.1.2 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [a0c0ee7d] DifferentiationInterface v0.7.9 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [9aa1b823] FastClosures v0.3.2 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.13.1 [076d061b] HashArrayMappedTries v0.2.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.2 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [ae98c720] Jieko v0.2.1 [5be7bae1] LBFGSB v0.4.1 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 ⌅ [20f20a25] MakieCore v0.9.5 [eff96d63] Measurements v2.14.1 [c116f080] Mendeleev v1.0.2 [626554b9] MetaGraphs v0.8.1 [e1d29d7a] Missings v1.2.0 ⌅ [6c89ec66] MolecularGraph v0.19.1 [2e0e35c7] Moshi v0.3.7 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [7f7a1694] Optimization v4.8.0 ⌅ [bca83a33] OptimizationBase v2.14.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [5ad8b20f] PhysicalConstants v0.2.4 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v0.4.34 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.11.0 [94ee1d12] Quaternions v0.7.6 [44044271] RDKitMinimalLib v1.2.0 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [f2b01f46] Roots v2.2.10 [6038ab10] Rotations v1.7.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [0bca4576] SciMLBase v2.124.0 [a6db7da4] SciMLLogging v1.3.1 [c0aeaf25] SciMLOperators v1.9.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [7e506255] ScopedValues v1.5.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [9f842d2f] SparseConnectivityTracer v1.1.2 [0a514795] SparseMatrixColorings v0.4.22 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 ⌃ [2efcf032] SymbolicIndexingInterface v0.3.44 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.25.1 [a7773ee8] UnitfulAtomic v1.0.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.14 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [7746bdde] Glib_jll v2.86.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [e9f186c6] Libffi_jll v3.4.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [36c8627f] Pango_jll v1.56.4+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [03d1d220] RDKit_jll v2022.9.5+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 ⌅ [28df3c45] boost_jll v1.76.0+1 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [b53b4c65] libpng_jll v1.6.50+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Error: illegal HIN file in line 31: cannot finalize bond (29, 30, BiochemicalAlgorithms.BondOrder.Single)! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/hinfile.jl:232 ┌ Error: illegal HIN file in line 31: cannot finalize bond (29, 30, BiochemicalAlgorithms.BondOrder.Single)! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/hinfile.jl:232 ┌ Warning: Atom names in HIN files cannot contain spaces! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/hinfile.jl:445 ┌ Warning: Atom names in HIN files cannot contain spaces! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/hinfile.jl:445 ┌ Warning: write_sdfile: writer only supports 2D data; projecting atoms onto xy-plane... └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/sdfile.jl:28 [ Info: 1 records exported. ┌ Warning: write_sdfile: writer only supports 2D data; projecting atoms onto xy-plane... └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/sdfile.jl:33 [ Info: 11 records exported. ┌ Warning: write_sdfile: writer only supports 2D data; projecting atoms onto xy-plane... └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/sdfile.jl:28 [ Info: 1 records exported. ┌ Warning: write_sdfile: writer only supports 2D data; projecting atoms onto xy-plane... └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/fileformats/sdfile.jl:33 [ Info: 11 records exported. [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds ┌ Warning: 2 warnings occurred during setup that were suppressed: │ - Torsion: 2 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: 5 warnings occurred during setup that were suppressed: │ - Torsion: 5 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: 20 warnings occurred during setup that were suppressed: │ - QuadraticBondStretch: 3 warnings │ - QuadraticAngleBend : 12 warnings │ - Torsion : 5 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: 5 warnings occurred during setup that were suppressed: │ - Torsion: 5 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: 5 warnings occurred during setup that were suppressed: │ - Torsion: 5 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: 20 warnings occurred during setup that were suppressed: │ - QuadraticBondStretch: 3 warnings │ - QuadraticAngleBend : 12 warnings │ - Torsion : 5 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: 5 warnings occurred during setup that were suppressed: │ - Torsion: 5 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 [ Info: reconstruct_fragments!(): added 1435 atoms. [ Info: build_bonds!(): built 3839 bonds [ Info: reconstruct_fragments!(): added 1435 atoms. [ Info: build_bonds!(): built 3839 bonds [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds ┌ Warning: 2 warnings occurred during setup that were suppressed: │ - Torsion: 2 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 Optimize structure: Test Failed at /home/pkgeval/.julia/packages/BiochemicalAlgorithms/EdAH5/test/optimization/test_optimize_structure.jl:11 Expression: Int((optimize_structure!(ff)).retcode) == 1 Evaluated: 7 == 1 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] top-level scope @ ~/.julia/packages/BiochemicalAlgorithms/EdAH5/test/optimization/test_optimize_structure.jl:516 [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds ┌ Warning: 2 warnings occurred during setup that were suppressed: │ - Torsion: 2 warnings │ Use print_warnings(ff) to display them. └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/forcefields/common/forcefield.jl:233 ┌ Warning: Correlation matrix is not positive definit! Computing rotation through `RMSDMinimizerCoutsias` instead! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/mappings/rigid_mapping.jl:176 ┌ Warning: Correlation matrix is not positive definit! Computing rotation through `RMSDMinimizerCoutsias` instead! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/mappings/rigid_mapping.jl:176 ┌ Warning: Correlation matrix is not positive definit! Computing rotation through `RMSDMinimizerCoutsias` instead! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/mappings/rigid_mapping.jl:176 ┌ Warning: Correlation matrix is not positive definit! Computing rotation through `RMSDMinimizerCoutsias` instead! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/mappings/rigid_mapping.jl:176 ┌ Warning: Correlation matrix is not positive definit! Computing rotation through `RMSDMinimizerCoutsias` instead! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/mappings/rigid_mapping.jl:176 ┌ Warning: Correlation matrix is not positive definit! Computing rotation through `RMSDMinimizerCoutsias` instead! └ @ BiochemicalAlgorithms ~/.julia/packages/BiochemicalAlgorithms/EdAH5/src/mappings/rigid_mapping.jl:176 [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds [ Info: Added 1 atoms. [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds [ Info: Added 1 atoms. [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds [ Info: reconstruct_fragments!(): added 0 atoms. [ Info: build_bonds!(): built 22 bonds Test Summary: | Pass Fail Total Time Package | 9921 1 9922 16m06.1s test/aqua.jl | 11 11 2m38.4s Aqua | 11 11 2m38.3s Method ambiguity | 1 1 29.6s Unbound type parameters | 1 1 0.3s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 28.7s Compat bounds | 4 4 0.7s Piracy | 1 1 0.3s Persistent tasks | 1 1 51.7s test/fileformats/test_hinfile.jl | 52 52 46.9s Read HIN | 48 48 34.2s Write HIN | 4 4 12.7s test/core/test_atom.jl | 606 606 35.8s AtomTable | 308 308 16.5s Atom | 298 298 19.3s test/core/test_bond_order.jl | 8 8 0.1s Bond Order | 8 8 0.1s test/fileformats/test_pdb.jl | 1870 1870 1m16.0s Read PDB | 1824 1824 1m04.8s Write PDB | 14 14 5.3s Read PDBx/mmCIF | 18 18 0.6s Write PDBx/mmCIF | 14 14 5.3s test/core/test_chain.jl | 462 462 10.4s ChainTable | 206 206 7.5s Chain | 256 256 2.8s test/substructures/test_substructure.jl | 6 6 16.7s Substructure | 6 6 16.7s test/core/test_bond.jl | 312 312 8.3s BondTable | 176 176 3.2s Bond | 136 136 5.2s test/core/test_secondary_structure.jl | 514 514 22.1s SecondaryStructureTable | 240 240 7.7s SecondaryStructure | 274 274 14.4s test/core/test_types.jl | 106 106 3.3s Vector3 | 51 51 1.9s Matrix3 | 51 51 1.4s Properties | 2 2 0.0s Flags | 2 2 0.0s test/fileformats/test_sdfile.jl | 34 34 48.5s Read SDFile | 30 30 32.0s Write SDFile | 4 4 16.5s test/forcefields/AMBER/test_amberff.jl | 1951 1951 3m34.9s AmberFF | 1951 1951 3m34.9s test/core/test_system_component_table.jl | 78 78 1.8s SystemComponentTableCol | 78 78 1.8s test/core/test_fragment.jl | 1734 1734 48.2s FragmentTable | 266 266 6.6s FragmentTable/None | 178 178 1.0s FragmentTable/Nucleotide | 178 178 1.0s FragmentTable/Residue | 178 178 1.1s Fragment | 118 118 3.2s Fragment/None | 272 272 12.9s Fragment/Nucleotide | 272 272 11.5s Fragment/Residue | 272 272 11.1s test/core/test_system.jl | 618 618 2m29.7s System | 618 618 2m29.7s test/core/test_amino_acid.jl | 63 63 0.3s AminoAcid | 63 63 0.3s test/optimization/test_optimize_structure.jl | 5 1 6 14.5s Optimize structure | 2 1 3 10.2s Optimize hydrogen positions | 3 3 4.3s test/substructures/test_sssr.jl | 3 3 3.6s Ring Perception | 3 3 3.6s test/core/test_element.jl | 126 126 0.3s Element | 126 126 0.3s test/fileformats/test_pubchem_json.jl | 106 106 5.1s Read PubChem | 106 106 5.1s test/mappings/test_mappings.jl | 224 224 23.7s TrivialAtomBijection | 8 8 1.0s RigidTransform | 16 16 0.7s translate! | 88 88 1.7s rigid_transform! | 44 44 3.7s compute_rmsd | 14 14 3.1s compute_rmsd_minimizer | 42 42 11.5s map_rigid! | 12 12 2.1s test/preprocessing/test_add_hydrogens.jl | 2 2 17.1s FragmentDB | 2 2 17.1s test/substructures/test_smarts.jl | 30 30 36.6s SMARTS | 30 30 36.6s test/core/test_moleculargraph_wrapper.jl | 162 162 2.2s Convert to SDFMolGraph | 162 162 2.2s test/core/test_molecule.jl | 834 834 19.5s MoleculeTable | 238 238 7.9s MoleculeTable/None | 146 146 1.1s MoleculeTable/Protein | 146 146 1.0s Molecule | 68 68 1.7s Molecule/None | 118 118 4.4s Molecule/Protein | 118 118 3.5s test/preprocessing/test_fragmentdb.jl | 4 4 2.1s FragmentDB | 4 4 2.1s ERROR: LoadError: Some tests did not pass: 9921 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BiochemicalAlgorithms/EdAH5/test/runtests.jl:3 Testing failed after 1030.64s ERROR: LoadError: Package BiochemicalAlgorithms errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2005.87s: package has test failures