Package evaluation to load PALEOmodel on Julia 1.13.0-DEV.1276 (4ca97dc26d*) started at 2025-10-10T10:57:03.376 ################################################################################ # Set-up # Set-up completed after 0.11s ################################################################################ # Installation # Installing PALEOmodel... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [bf7b4fbe] + PALEOmodel v0.16.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.2.4 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v2.0.1 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.4.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌃ [2b5f629d] + DiffEqBase v6.176.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.8 [3c3547ce] + DiskArrays v0.4.17 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.14 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [5789e2e9] + FileIO v1.17.1 [6a86dc24] + FiniteDiff v2.28.1 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.1 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [5903a43b] + Infiltrator v1.9.3 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.5 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.4.4 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [bdf0d083] + MultiFloats v2.3.0 [85f8d34a] + NCDatasets v0.14.9 [d41bc354] + NLSolversBase v7.10.0 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [804b410e] + PALEOboxes v0.22.3 [bf7b4fbe] + PALEOmodel v0.16.5 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.10.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 ⌃ [0bca4576] + SciMLBase v2.99.0 ⌅ [c0aeaf25] + SciMLOperators v0.4.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [47a9eef4] + SparseDiffTools v2.26.0 [06eadbd4] + SparsityTracing v0.2.6 [e56a9233] + Sparspak v0.3.14 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [7792a7ef] + StrideArraysCore v0.5.8 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 ⌅ [c3572dad] + Sundials v4.28.0 [2efcf032] + SymbolicIndexingInterface v0.3.45 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [1e6cf692] + TestEnv v1.102.2 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [19fa3120] + VertexSafeGraphs v0.2.0 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.14 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [63e82ce6] + SLEEF_jll v3.9.0+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 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[458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 18.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1633.4 ms ✓ ADTypes → ADTypesEnzymeCoreExt 910.6 ms ✓ Parameters 2448.3 ms ✓ DiskArrays 2343.8 ms ✓ CFTime 1472.6 ms ✓ CodeTracking 1654.9 ms ✓ Tables 798.0 ms ✓ EnzymeCore → AdaptExt 1106.5 ms ✓ GPUArraysCore 819.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 3653.1 ms ✓ DataStructures 842.5 ms ✓ SciMLStructures 4220.4 ms ✓ SciMLOperators 3539.9 ms ✓ SymbolicIndexingInterface 866.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 878.4 ms ✓ Distances → DistancesChainRulesCoreExt 891.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3143.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 843.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1454.0 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1692.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1393.1 ms ✓ Adapt → AdaptStaticArraysExt 1554.8 ms ✓ Accessors → StaticArraysExt 12076.9 ms ✓ StaticArrayInterface 3732.8 ms ✓ JSON 3843.0 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 4039.9 ms ✓ SparsityTracing 7526.3 ms ✓ ForwardDiff 13077.2 ms ✓ HDF5 6132.7 ms ✓ NetCDF_jll 8822.3 ms ✓ JuliaInterpreter 1657.1 ms ✓ StructArrays 33256.5 ms ✓ PrettyTables 846.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 787.3 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1491.4 ms ✓ SortingAlgorithms 7563.0 ms ✓ Graphs 3285.7 ms ✓ CommonDataModel 1016.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1632.7 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 4296.7 ms ✓ Interpolations 1035.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1650.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1194.2 ms ✓ CloseOpenIntervals 1401.5 ms ✓ LayoutPointers 2888.4 ms ✓ BenchmarkTools 2280.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2364.7 ms ✓ FastPower → FastPowerForwardDiffExt 2216.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 7733.7 ms ✓ MAT 17064.5 ms ✓ LoweredCodeUtils 1458.8 ms ✓ StructArrays → StructArraysSparseArraysExt 1015.0 ms ✓ StructArrays → StructArraysLinearAlgebraExt 1015.9 ms ✓ StructArrays → StructArraysAdaptExt 1706.7 ms ✓ StructArrays → StructArraysStaticArraysExt 1591.2 ms ✓ Accessors → StructArraysExt 3197.2 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 3810.2 ms ✓ RecursiveArrayTools 81614.7 ms ✓ DataFrames 3408.4 ms ✓ VertexSafeGraphs 15265.1 ms ✓ NCDatasets 1932.9 ms ✓ StrideArraysCore 3175.7 ms ✓ NLSolversBase 9773.7 ms ✓ Revise 2041.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1302.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 2011.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1465.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStructArraysExt 24079.3 ms ✓ SciMLBase 9163.7 ms ✓ SparseDiffTools 2100.5 ms ✓ Polyester 7499.3 ms ✓ LineSearches 4729.2 ms ✓ Revise → DistributedExt 2984.1 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2212.9 ms ✓ FastBroadcast 4170.5 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 3534.9 ms ✓ NLsolve 1 dependency had output during precompilation: ┌ Revise │ ┌ Warning: precompile directive │ │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. │ └ @ Revise ~/.julia/packages/Revise/p9Zlq/src/precompile.jl:65 └ Precompilation completed after 409.85s ################################################################################ # Loading # Loading PALEOmodel... ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [2] top-level scope @ ~/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:309 [4] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [6] macro expansion @ ./loading.jl:2464 [inlined] [7] macro expansion @ ./lock.jl:376 [inlined] [8] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [9] require @ ./loading.jl:2404 [inlined] [10] eval_import_path @ ./module.jl:36 [inlined] [11] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [12] top-level scope @ ~/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:18 [13] include(mod::Module, _path::String) @ Base ./Base.jl:309 [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [16] macro expansion @ ./loading.jl:2464 [inlined] [17] macro expansion @ ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [19] require @ ./loading.jl:2404 [inlined] [20] eval_import_path @ ./module.jl:36 [inlined] [21] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [22] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [23] top-level scope @ none:1 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:1 in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:1 Loading failed after 74.45s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PALEOmodel'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 530.13s: there were unidentified errors