Package evaluation to test TumorGrowth on Julia 1.12.4 (422f456051*) started at 2026-01-29T23:24:22.314 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.51s ################################################################################ # Installation # Installing TumorGrowth... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [f6b3d34e] + TumorGrowth v0.3.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [a9b6321e] + Atomix v1.1.2 [aae01518] + BandedMatrices v1.11.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.6.2 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [7057c7e9] + Cassette v0.3.14 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.31 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [bcd4f6db] + DelayDiffEq v5.67.1 [2b5f629d] + DiffEqBase v6.199.0 [459566f4] + DiffEqCallbacks v4.12.0 [77a26b50] + DiffEqNoiseProcess v5.26.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [0c46a032] + DifferentialEquations v7.17.0 [a0c0ee7d] + DifferentiationInterface v0.7.15 [8d63f2c5] + DispatchDoctor v0.4.27 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [792122b4] + EarlyStopping v0.3.0 [4e289a0a] + EnumX v1.0.6 [7da242da] + Enzyme v0.13.123 [f151be2c] + EnzymeCore v0.8.18 [d4d017d3] + ExponentialUtilities v1.30.0 [e2ba6199] + ExprTools v0.1.10 [21656369] + ExpressionExplorer v1.1.3 [55351af7] + ExproniconLite v0.10.14 [9d29842c] + FastAlmostBandedMatrices v0.1.6 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [f62d2435] + FunctionProperties v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [61eb1bfa] + GPUCompiler v1.8.2 [c145ed77] + GenericSchur v0.5.6 [86223c79] + Graphs v1.13.4 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [b3c1a2ee] + IterationControl v0.5.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.21.1 [63c18a36] + KernelAbstractions v0.9.39 [ba0b0d4f] + Krylov v0.10.5 [929cbde3] + LLVM v9.4.4 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.9.5 [0fc2ff8b] + LeastSquaresOptim v0.8.8 [2d8b4e74] + LevyArea v1.0.0 [87fe0de2] + LineSearch v0.1.6 [d3d80556] + LineSearches v7.6.0 [7ed4a6bd] + LinearSolve v3.57.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [b2108857] + Lux v1.30.0 [bb33d45b] + LuxCore v1.5.3 [82251201] + LuxLib v1.15.2 [7e8f7934] + MLDataDevices v1.17.2 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [a3b82374] + MatrixFactorizations v3.1.3 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v8.0.0 [872c559c] + NNlib v0.9.33 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.14.0 [be0214bd] + NonlinearSolveBase v2.11.1 [5959db7a] + NonlinearSolveFirstOrder v1.11.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [d8793406] + ObjectFile v0.5.0 [429524aa] + Optim v2.0.0 [3bd65402] + Optimisers v0.4.7 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.106.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] + OrdinaryDiffEqBDF v1.14.0 [bbf590c4] + OrdinaryDiffEqCore v3.2.0 [50262376] + OrdinaryDiffEqDefault v1.12.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.22.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.8.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.12.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.13.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.20.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.11.0 [521117fe] + OrdinaryDiffEqLinear v1.10.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.11.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.19.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.8.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.10.0 [5b33eab2] + OrdinaryDiffEqPRK v1.8.0 [04162be5] + OrdinaryDiffEqQPRK v1.8.0 [af6ede74] + OrdinaryDiffEqRKN v1.9.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.22.0 [2d112036] + OrdinaryDiffEqSDIRK v1.11.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.11.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.10.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] + OrdinaryDiffEqVerner v1.10.0 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [a3311ec8] + ReactantCore v0.1.16 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.46.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.2.0 [37e2e3b7] + ReverseDiff v1.16.2 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.135.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [1ed8b502] + SciMLSensitivity v7.94.0 [53ae85a6] + SciMLStructures v1.10.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.10.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.3 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [9672c7b4] + SteadyStateDiffEq v2.9.0 [789caeaf] + StochasticDiffEq v6.92.0 [7792a7ef] + StrideArraysCore v0.5.8 [09ab397b] + StructArrays v0.7.2 [53d494c1] + StructIO v0.3.1 [c3572dad] + Sundials v5.1.0 [fd094767] + Suppressor v0.2.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [9f7883ad] + Tracker v0.2.38 [e689c965] + Tracy v0.1.6 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [f6b3d34e] + TumorGrowth v0.3.2 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [ea10d353] + WeakRefStrings v1.4.2 [d49dbf32] + WeightInitializers v1.3.1 [76eceee3] + WorkerUtilities v1.6.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [7cc45869] + Enzyme_jll v0.0.243+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [dad2f222] + LLVMExtra_jll v0.0.38+0 [ad6e5548] + LibTracyClient_jll v0.13.1+0 [856f044c] + MKL_jll v2025.2.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ca45d3f4] + SuiteSparse32_jll v7.12.1+0 [fb77eaff] + Sundials_jll v7.5.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 17926.3 ms ✓ NonlinearSolve → NonlinearSolveLeastSquaresOptimExt 1.6679804e6 ms ✓ TumorGrowth 195016.4 ms ✓ TumorGrowth → PlotsExt 3 dependencies successfully precompiled in 1947 seconds. 594 already precompiled. 2 dependencies had output during precompilation: ┌ TumorGrowth → PlotsExt │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 └ ┌ TumorGrowth │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 │ ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ │ For the time being we recommend using 1.11 or LTS (1.10). │ │ │ │ For latest updates, check the status of support for Julia 1.12+ at │ │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ │ │ └ @ Enzyme ~/.julia/packages/Enzyme/Jkgzt/src/Enzyme.jl:1587 └ Precompilation completed after 1939.32s ################################################################################ # Testing # Testing TumorGrowth Status `/tmp/jl_FuXxPy/Project.toml` [336ed68f] CSV v0.10.15 [b0b7db55] ComponentArrays v0.15.31 [0c46a032] DifferentialEquations v7.17.0 [d9f16b24] Functors v0.5.2 [b3c1a2ee] IterationControl v0.5.4 [0fc2ff8b] LeastSquaresOptim v0.8.8 [b2108857] Lux v1.30.0 [3bd65402] Optimisers v0.4.7 [91a5bcdd] Plots v1.41.4 [1ed8b502] SciMLSensitivity v7.94.0 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [f6b3d34e] TumorGrowth v0.3.2 [3a884ed6] UnPack v1.0.2 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_FuXxPy/Manifest.toml` [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.2 [aae01518] BandedMatrices v1.11.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.6.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [7057c7e9] Cassette v0.3.14 [082447d4] ChainRules v1.72.6 [d360d2e6] 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Testing Running tests... Test Summary: | Pass Total Time tools | 12 12 3m15.8s Test Summary: | Pass Total Time functor | 5 5 1.8s Test Summary: | Pass Total Time patient_data | 6 6 47.3s ┌ Warning: Mixed-Precision `matmul_cpu_fallback!` detected and Octavian.jl cannot be used for this set of inputs (C [Matrix{Float64}]: A [Matrix{Float32}] x B [Matrix{Float64}]). Falling back to generic implementation. This may be slow. └ @ LuxLib.Impl ~/.julia/packages/LuxLib/26qlD/src/impl/matmul.jl:190 Test Summary: | Pass Total Time odes | 9 9 10.4s Test Summary: | Pass Total Time models | 61 61 2m29.9s [ Info: final loss: 6.433749669587647e-6 [ Info: Stop triggered by NumberLimit(10000) stopping criterion. [ Info: final loss: 9.006681506919981e-7 [ Info: Stop triggered by NumberLimit(3) stopping criterion. [ Info: final loss: 6.433749669587647e-6 [ Info: Stop triggered by NumberLimit(10000) stopping criterion. [ Info: final loss: 6.433749669587647e-6 [ Info: Stop triggered by NumberLimit(10000) stopping criterion. [ Info: final loss: 9.006681506919981e-7 [ Info: Stop triggered by NumberLimit(3) stopping criterion. Test Summary: | Pass Total Time compare | 7 7 1m26.8s [ Info: final loss: 2.1906496227207157e-14 [ Info: Stop triggered by Threshold(2.220446049250313e-14) stopping criterion. [ Info: final loss: 2.1906496227207157e-14 [ Info: Stop triggered by Threshold(2.220446049250313e-14) stopping criterion. Test Summary: | Pass Total Time optimisers | 22 22 43.5s [ Info: final loss: 1.9017155831464425e-6 [ Info: Stop triggered by a `Callback` control. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 511 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm10DataLayout17getTypeSizeInBitsEPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZNK4llvm15ScalarEvolution17getTypeSizeInBitsEPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15ScalarEvolution22isImpliedViaOperationsENS_7CmpInst9PredicateEPKNS_4SCEVES5_S5_S5_j at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15ScalarEvolution27isImpliedCondOperandsHelperENS_7CmpInst9PredicateEPKNS_4SCEVES5_S5_S5_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15ScalarEvolution26isImpliedCondBalancedTypesENS_7CmpInst9PredicateEPKNS_4SCEVES5_S2_S5_S5_PKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15ScalarEvolution13isImpliedCondENS_7CmpInst9PredicateEPKNS_4SCEVES5_PKNS_5ValueEbPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZZN4llvm15ScalarEvolution30isBasicBlockEntryGuardedByCondEPKNS_10BasicBlockENS_7CmpInst9PredicateEPKNS_4SCEVES8_ENKUlPKNS_5ValueEbE1_clESB_b at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15ScalarEvolution30isBasicBlockEntryGuardedByCondEPKNS_10BasicBlockENS_7CmpInst9PredicateEPKNS_4SCEVES8_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15ScalarEvolution19evaluatePredicateAtENS_7CmpInst9PredicateEPKNS_4SCEVES5_PKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_114SimplifyIndvar21eliminateIVComparisonEPN4llvm8ICmpInstEPNS1_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_114SimplifyIndvar13simplifyUsersEPN4llvm7PHINodeEPNS1_9IVVisitorE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17simplifyUsersOfIVEPNS_7PHINodeEPNS_15ScalarEvolutionEPNS_13DominatorTreeEPNS_8LoopInfoEPKNS_19TargetTransformInfoERNS_15SmallVectorImplINS_14WeakTrackingVHEEERNS_12SCEVExpanderEPNS_9IVVisitorE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm18IndVarSimplifyPass3runERNS_4LoopERNS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEES5_RNS_10LPMUpdaterE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:741 operator() at /source/src/jitlayers.cpp:1459 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1420 [inlined] operator() at /source/src/jitlayers.cpp:1572 [inlined] addModule at /source/src/jitlayers.cpp:2031 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_concrete_solve_adjoint#248 at /home/pkgeval/.julia/packages/SciMLSensitivity/WtyIc/src/concrete_solve.jl:598 _concrete_solve_adjoint at /home/pkgeval/.julia/packages/SciMLSensitivity/WtyIc/src/concrete_solve.jl:450 [inlined] #_solve_adjoint#42 at /home/pkgeval/.julia/packages/DiffEqBase/wx0FA/src/solve.jl:975 [inlined] _solve_adjoint at /home/pkgeval/.julia/packages/DiffEqBase/wx0FA/src/solve.jl:952 [inlined] #rrule#5 at /home/pkgeval/.julia/packages/DiffEqBase/wx0FA/ext/DiffEqBaseChainRulesCoreExt.jl:32 [inlined] rrule at /home/pkgeval/.julia/packages/DiffEqBase/wx0FA/ext/DiffEqBaseChainRulesCoreExt.jl:26 [inlined] rrule at /home/pkgeval/.julia/packages/ChainRulesCore/Vsbj9/src/rules.jl:144 [inlined] chain_rrule_kw at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/chainrules.jl:246 [inlined] macro expansion at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl (unknown line) [inlined] _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:81 unknown function (ip: 0x74c0d7d3fe51) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 _apply at ./boot.jl:1019 adjoint at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/lib.jl:211 [inlined] adjoint at ./none:0 unknown function (ip: 0x74c0d7d3d62c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _pullback at /home/pkgeval/.julia/packages/ZygoteRules/CkVIK/src/adjoint.jl:67 [inlined] #solve#28 at /home/pkgeval/.julia/packages/DiffEqBase/wx0FA/src/solve.jl:579 [inlined] _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:0 _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:81 unknown function (ip: 0x74c0d7d37b75) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_#49 at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/models/neural2.jl:99 [inlined] _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:0 unknown function (ip: 0x74c0d7d35cab) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 Neural2 at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/models/neural2.jl:87 [inlined] _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:0 unknown function (ip: 0x74c0d7d34246) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:81 _pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface2.jl:81 unknown function (ip: 0x74c0d7d328a0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:152 train! at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/optimisers.jl:68 train! at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/optimisers.jl:296 [inlined] train! at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/calibration.jl:269 [inlined] update! at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/controls.jl:20 update! at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/controls.jl:17 [inlined] update! at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/composite_controls.jl:25 [inlined] update! at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/composite_controls.jl:25 [inlined] update! at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/composite_controls.jl:25 unknown function (ip: 0x74c0d7d31878) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #train!#28 at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/train.jl:22 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 train! at /home/pkgeval/.julia/packages/IterationControl/t81NX/src/train.jl:11 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #solve!#20 at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/optimisers.jl:326 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 solve! at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/src/optimisers.jl:326 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 EvalInto at ./boot.jl:494 [inlined] |> at ./operators.jl:972 [inlined] top-level scope at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/test/runtests.jl:18 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74c135ba8249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./process.jl:685 wait at ./process.jl:686 jfptr_wait_46335.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2553 unknown function (ip: 0x772bc9f172d3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2493 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2308 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2161 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2275 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x772bc9f0d8dc) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2222 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2212 unknown function (ip: 0x772bc9f02b89) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2478 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:515 unknown function (ip: 0x772bc9f027c1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x772bc9ef9ca0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x772bc9ef7f5f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x772bd26d1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000772bb81fc010 Total snapshots: 368. Utilization: 0% ╎368 @Base/client.jl:550 _start() ╎ 368 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 368 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 368 @Base/loading.jl:2930 _include(mapexpr::Function, mod::Module, _pat… ╎ 368 @Base/loading.jl:2870 include_string(mapexpr::typeof(identity), mo… ╎ 368 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 368 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 368 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 368 @Pkg/src/API.jl:157 test ╎ ╎ 368 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 368 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 368 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 368 @Pkg/src/API.jl:515 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 368 @Pkg/src/API.jl:538 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 368 @Pkg/…erations.jl:2384 test ╎ ╎ ╎ 368 @Pkg/…erations.jl:2478 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 368 @Pkg/…rations.jl:2212 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 368 @Pkg/…rations.jl:2222 #sandbox#182 ╎ ╎ ╎ ╎ 368 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 368 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 368 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 368 @Pkg/…tions.jl:2275 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 368 @Pkg/…tions.jl:2161 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 368 @Pkg/…tions.jl:2308 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 368 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 368 @Pkg/…ions.jl:2493 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 368 @Pkg/…ons.jl:2553 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 368 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 368 @Base/…ss.jl:685 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 368 @Base/…on.jl:141 wait(c::Base.GenericCond… ╎ ╎ ╎ ╎ ╎ ╎ 368 @Base/…sk.jl:1228 wait() 367╎ ╎ ╎ ╎ ╎ ╎ ╎ 368 @Base/…sk.jl:1216 poptask(W::Base.Intru… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_18905.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 25424881 (Pool: 25424099; Big: 782); GC: 25 [511] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TumorGrowth/9NYqI/test/calibration.jl:13 PkgEval terminated after 2724.21s: test duration exceeded the time limit