Package evaluation to test StochasticGene on Julia 1.12.4 (422f456051*) started at 2026-01-29T20:35:18.059 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.53s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed RegistryInstances ─────────────────── v0.1.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.9.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed OrdinaryDiffEqRosenbrock ──────────── v1.22.0 Installed SciMLPublic ───────────────────────── v1.0.1 Installed StatsFuns ─────────────────────────── v1.5.2 Installed Preferences ───────────────────────── v1.5.1 Installed OrdinaryDiffEqStabilizedRK ────────── v1.8.0 Installed Compiler ──────────────────────────── v0.1.1 Installed LoggingExtras ─────────────────────── v1.2.0 Installed Accessors ─────────────────────────── v0.1.43 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed FFTW ──────────────────────────────── v1.10.0 Installed SciMLLogging ──────────────────────── v1.8.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.11.0 Installed PDMats ────────────────────────────── v0.11.37 Installed InlineStrings ─────────────────────── v1.4.5 Installed TimerOutputs ──────────────────────── v0.5.29 Installed OrdinaryDiffEqPRK ─────────────────── v1.8.0 Installed SciMLJacobianOperators ────────────── v0.1.12 Installed Polyester ─────────────────────────── v0.7.18 Installed NonlinearSolve ────────────────────── v4.14.0 Installed Git_jll ───────────────────────────── v2.52.0+0 Installed EnumX ─────────────────────────────── v1.0.6 Installed InvertedIndices ───────────────────── v1.3.1 Installed MaybeInplace ──────────────────────── v0.1.4 Installed OrdinaryDiffEqCore ────────────────── v3.2.0 Installed DelimitedFiles ────────────────────── v1.9.1 Installed StaticArrays ──────────────────────── v1.9.16 Installed RecursiveArrayTools ───────────────── v3.46.0 Installed FunctionWrappers ──────────────────── v1.1.3 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.9.0 Installed CodeTracking ──────────────────────── v3.0.0 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed Statistics ────────────────────────── v1.11.1 Installed OrdinaryDiffEqSSPRK ───────────────── v1.11.0 Installed Static ────────────────────────────── v1.3.1 Installed IrrationalConstants ───────────────── v0.2.6 Installed Missings ──────────────────────────── v1.2.0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed MuladdMacro ───────────────────────── v0.2.4 Installed FiniteDiff ────────────────────────── v2.29.0 Installed OrdinaryDiffEqVerner ──────────────── v1.10.0 Installed FastPower ─────────────────────────── v1.3.1 Installed DataFrames ────────────────────────── v1.8.1 Installed PtrArrays ─────────────────────────── v1.3.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed OrdinaryDiffEqFIRK ────────────────── v1.20.0 Installed DiffEqBase ────────────────────────── v6.199.0 Installed JSON ──────────────────────────────── v0.21.4 Installed SciMLBase ─────────────────────────── v2.135.0 Installed ADTypes ───────────────────────────── v1.21.0 Installed Revise ────────────────────────────── v3.13.2 Installed NonlinearSolveQuasiNewton ─────────── v1.12.0 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.19.0 Installed SpecialFunctions ──────────────────── v2.6.1 Installed SentinelArrays ────────────────────── v1.4.9 Installed LinearSolve ───────────────────────── v3.57.0 Installed LoweredCodeUtils ──────────────────── v3.5.0 Installed BracketingNonlinearSolve ──────────── v1.6.2 Installed SimpleNonlinearSolve ──────────────── v2.10.0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed IfElse ────────────────────────────── v0.1.1 Installed LineSearch ────────────────────────── v0.1.6 Installed NaNMath ───────────────────────────── v1.1.3 Installed ThreadingUtilities ────────────────── v0.5.5 Installed IJulia ────────────────────────────── v1.34.1 Installed ManualMemory ──────────────────────── v0.1.8 Installed TranscodingStreams ────────────────── v0.11.3 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed NLSolversBase ─────────────────────── v7.10.0 Installed WorkerUtilities ───────────────────── v1.6.1 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed WeakRefStrings ────────────────────── v1.4.2 Installed CommonSubexpressions ──────────────── v0.3.1 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed DataStructures ────────────────────── v0.19.3 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed StatsAPI ──────────────────────────── v1.8.0 Installed ExprTools ─────────────────────────── v0.1.10 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed Compat ────────────────────────────── v4.18.1 Installed OrdinaryDiffEq ────────────────────── v6.106.0 Installed StaticArrayInterface ──────────────── v1.8.0 Installed OrdinaryDiffEqLinear ──────────────── v1.10.0 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed SciMLStructures ───────────────────── v1.10.0 Installed StatsBase ─────────────────────────── v0.34.10 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed DiffRules ─────────────────────────── v1.15.1 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed GenericSchur ──────────────────────── v0.5.6 Installed OrdinaryDiffEqExplicitRK ──────────── v1.8.0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.10.0 Installed Conda ─────────────────────────────── v1.10.3 Installed TableTraits ───────────────────────── v1.0.1 Installed LayoutPointers ────────────────────── v0.1.17 Installed ZMQ ───────────────────────────────── v1.5.1 Installed OrdinaryDiffEqQPRK ────────────────── v1.8.0 Installed Expat_jll ─────────────────────────── v2.7.3+0 Installed PositiveFactorizations ────────────── v0.2.4 Installed DiffResults ───────────────────────── v1.1.0 Installed JuliaInterpreter ──────────────────── v0.10.9 Installed OrdinaryDiffEqFunctionMap ─────────── v1.9.0 Installed SciMLOperators ────────────────────── v1.14.1 Installed Parsers ───────────────────────────── v2.8.3 Installed NonlinearSolveBase ────────────────── v2.11.1 Installed PooledArrays ──────────────────────── v1.4.3 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.10.0 Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed Setfield ──────────────────────────── v1.1.2 Installed ExproniconLite ────────────────────── v0.10.14 Installed JLLWrappers ───────────────────────── v1.7.1 Installed ConstructionBase ──────────────────── v1.6.0 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed PrettyTables ──────────────────────── v3.1.2 Installed EnzymeCore ────────────────────────── v0.8.18 Installed NonlinearSolveFirstOrder ──────────── v1.11.1 Installed DataValueInterfaces ───────────────── v1.0.0 Installed FastClosures ──────────────────────── v0.3.2 Installed AbstractTrees ─────────────────────── v0.4.5 Installed OrdinaryDiffEqExponentialRK ───────── v1.12.0 Installed OrderedCollections ────────────────── v1.8.1 Installed ChainRulesCore ────────────────────── v1.26.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed ArrayInterface ────────────────────── v7.22.0 Installed Reexport ──────────────────────────── v1.2.2 Installed LineSearches ──────────────────────── v7.5.1 Installed CSV ───────────────────────────────── v0.10.15 Installed OrdinaryDiffEqTsit5 ───────────────── v1.9.0 Installed OrdinaryDiffEqExtrapolation ───────── v1.13.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed AliasTables ───────────────────────── v1.1.3 Installed PreallocationTools ────────────────── v1.1.2 Installed LazilyInitializedFields ───────────── v1.3.0 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed MacroTools ────────────────────────── v0.5.16 Installed OrdinaryDiffEqLowStorageRK ────────── v1.11.0 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed CompositionsBase ──────────────────── v0.1.2 Installed Krylov ────────────────────────────── v0.10.5 Installed InverseFunctions ──────────────────── v0.1.17 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.10.0 Installed CommonSolve ───────────────────────── v0.2.6 Installed DocStringExtensions ───────────────── v0.9.5 Installed UnPack ────────────────────────────── v1.0.2 Installed Git ───────────────────────────────── v1.5.0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed Crayons ───────────────────────────── v4.1.1 Installed MultivariateStats ─────────────────── v0.10.3 Installed ExponentialUtilities ──────────────── v1.30.0 Installed Adapt ─────────────────────────────── v4.4.0 Installed Rmath ─────────────────────────────── v0.9.0 Installed OrdinaryDiffEqDifferentiation ─────── v1.22.0 Installed StrideArraysCore ──────────────────── v0.5.8 Installed OrdinaryDiffEqBDF ─────────────────── v1.14.0 Installed DifferentiationInterface ──────────── v0.7.15 Installed MarkdownAST ───────────────────────── v0.1.2 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.9.0 Installed Arpack_jll ────────────────────────── v3.5.2+0 Installed Jieko ─────────────────────────────── v0.2.1 Installed IOCapture ─────────────────────────── v1.0.0 Installed OrdinaryDiffEqFeagin ──────────────── v1.8.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed CPUSummary ────────────────────────── v0.2.7 Installed DataAPI ───────────────────────────── v1.16.0 Installed Tables ────────────────────────────── v1.12.1 Installed Moshi ─────────────────────────────── v0.3.7 Installed ConcreteStructs ───────────────────── v0.2.3 Installed RecipesBase ───────────────────────── v1.3.4 Installed PrecompileTools ───────────────────── v1.3.3 Installed Optim ─────────────────────────────── v1.13.3 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed Documenter ────────────────────────── v1.16.1 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed OpenSSH_jll ───────────────────────── v10.2.1+0 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed VersionParsing ────────────────────── v1.3.0 Installed Arpack ────────────────────────────── v0.5.4 Installed FilePathsBase ─────────────────────── v0.9.24 Installed OrdinaryDiffEqSymplecticRK ────────── v1.11.0 Installed Requires ──────────────────────────── v1.3.1 Installed QuadGK ────────────────────────────── v2.11.2 Installed FillArrays ────────────────────────── v1.16.0 Installed LSODA ─────────────────────────────── v0.7.5 Installed FastBroadcast ─────────────────────── v0.3.5 Installed ForwardDiff ───────────────────────── v1.3.1 Installed Git_LFS_jll ───────────────────────── v3.7.0+0 Installed OrdinaryDiffEqDefault ─────────────── v1.12.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.8.0 Installed Distributions ─────────────────────── v0.25.123 Installed Parameters ────────────────────────── v0.12.3 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.11.0 Installed StringManipulation ────────────────── v0.4.2 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed StochasticGene ────────────────────── v1.6.0 Installing 12 artifacts Installed artifact Arpack 138.3 KiB Installed artifact Expat 283.3 KiB Installed artifact ZeroMQ 316.1 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact libsodium 1.6 MiB Installed artifact LSODA 24.9 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Rmath 121.9 KiB Installed artifact FFTW 2.2 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 49.3 MiB Updating `~/.julia/environments/v1.12/Project.toml` [a2598c62] + StochasticGene v1.6.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v3.0.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.199.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.16.1 [4e289a0a] + EnumX v1.0.6 [f151be2c] + EnzymeCore v0.8.18 [d4d017d3] + ExponentialUtilities v1.30.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [d7ba0133] + Git v1.5.0 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.34.1 [b5f81e59] + IOCapture v1.0.0 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.9 [ba0b0d4f] + Krylov v0.10.5 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [87fe0de2] + LineSearch v0.1.6 ⌃ [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.57.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [6f1432cf] + LoweredCodeUtils v3.5.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.2 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [6f286f6a] + MultivariateStats v0.10.3 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.14.0 [be0214bd] + NonlinearSolveBase v2.11.1 [5959db7a] + NonlinearSolveFirstOrder v1.11.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.106.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] + OrdinaryDiffEqBDF v1.14.0 [bbf590c4] + OrdinaryDiffEqCore v3.2.0 [50262376] + OrdinaryDiffEqDefault v1.12.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.22.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.8.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.12.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.13.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.20.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.11.0 [521117fe] + OrdinaryDiffEqLinear v1.10.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.11.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.19.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.8.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.10.0 [5b33eab2] + OrdinaryDiffEqPRK v1.8.0 [04162be5] + OrdinaryDiffEqQPRK v1.8.0 [af6ede74] + OrdinaryDiffEqRKN v1.9.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.22.0 [2d112036] + OrdinaryDiffEqSDIRK v1.11.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.11.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.10.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] + OrdinaryDiffEqVerner v1.10.0 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v1.1.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.46.0 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.13.2 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.135.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.10.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [a2598c62] + StochasticGene v1.6.0 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c2297ded] + ZMQ v1.5.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [2e619515] + Expat_jll v2.7.3+0 [f5851436] + FFTW_jll v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aae0fff6] + LSODA_jll v0.1.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/dff8af3ab4f632d959ef19726b85939328ba289c/build.log` Installation completed after 83.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5319.5 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 4808.9 ms ✓ FunctionWrappers 783.5 ms ✓ MuladdMacro 1113.6 ms ✓ Compiler 962.8 ms ✓ ConcreteStructs 1057.5 ms ✓ AbstractFFTs 1153.1 ms ✓ PositiveFactorizations 1033.8 ms ✓ LaTeXStrings 1058.3 ms ✓ ExprTools 925.8 ms ✓ IteratorInterfaceExtensions 1030.1 ms ✓ WorkerUtilities 918.5 ms ✓ StatsAPI 1719.0 ms ✓ ADTypes 975.6 ms ✓ VersionParsing 6948.1 ms ✓ ExproniconLite 1234.4 ms ✓ ANSIColoredPrinters 792.5 ms ✓ UnPack 1966.4 ms ✓ FillArrays 1094.8 ms ✓ InverseFunctions 1260.9 ms ✓ Statistics 779.9 ms ✓ CommonSolve 7313.3 ms ✓ MacroTools 1094.1 ms ✓ ManualMemory 4615.5 ms ✓ OrderedCollections 1347.0 ms ✓ Requires 970.1 ms ✓ DataValueInterfaces 1034.5 ms ✓ EnumX 960.4 ms ✓ Reexport 872.4 ms ✓ SIMDTypes 1336.2 ms ✓ DocStringExtensions 1836.1 ms ✓ InlineStrings 1146.2 ms ✓ AbstractTrees 5742.1 ms ✓ IrrationalConstants 842.2 ms ✓ CompositionsBase 913.0 ms ✓ PtrArrays 1298.7 ms ✓ TranscodingStreams 761.4 ms ✓ FastPower 3845.2 ms ✓ NaNMath 964.3 ms ✓ DelimitedFiles 869.3 ms ✓ LazilyInitializedFields 936.6 ms ✓ InvertedIndices 1333.8 ms ✓ EnzymeCore 785.9 ms ✓ IfElse 3847.1 ms ✓ ConstructionBase 793.2 ms ✓ CommonWorldInvalidations 828.8 ms ✓ DataAPI 4736.8 ms ✓ Crayons 832.3 ms ✓ FastClosures 904.2 ms ✓ SciMLPublic 1096.5 ms ✓ StaticArraysCore 858.3 ms ✓ IOCapture 2438.4 ms ✓ GenericSchur 15286.1 ms ✓ Krylov 1845.3 ms ✓ PDMats 2107.3 ms ✓ SentinelArrays 1085.9 ms ✓ LoggingExtras 1897.0 ms ✓ CpuId 1141.4 ms ✓ Preferences 3969.1 ms ✓ Compat 1696.0 ms ✓ CodeTracking 784.1 ms ✓ FunctionWrappersWrappers 3819.8 ms ✓ AbstractFFTs → AbstractFFTsTestExt 3719.8 ms ✓ RuntimeGeneratedFunctions 6540.2 ms ✓ TimerOutputs 754.8 ms ✓ TableTraits 4674.1 ms ✓ DifferentiationInterface 3606.5 ms ✓ Jieko 1433.4 ms ✓ FillArrays → FillArraysSparseArraysExt 1734.6 ms ✓ InverseFunctions → InverseFunctionsTestExt 872.4 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1286.0 ms ✓ Statistics → SparseArraysExt 911.4 ms ✓ FillArrays → FillArraysStatisticsExt 1641.8 ms ✓ CommonSubexpressions 4782.7 ms ✓ ThreadingUtilities 3526.1 ms ✓ DataStructures 954.4 ms ✓ Parameters 979.3 ms ✓ Adapt 1858.4 ms ✓ MarkdownAST 1443.0 ms ✓ LogExpFunctions 849.6 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1254.9 ms ✓ AliasTables 901.1 ms ✓ CodecZlib 5312.1 ms ✓ RegistryInstances 844.9 ms ✓ ADTypes → ADTypesEnzymeCoreExt 876.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 848.1 ms ✓ ADTypes → ADTypesConstructionBaseExt 1254.0 ms ✓ PooledArrays 3741.3 ms ✓ Missings 905.5 ms ✓ DiffResults 1825.3 ms ✓ FillArrays → FillArraysPDMatsExt 1964.4 ms ✓ JLLWrappers 1347.7 ms ✓ PrecompileTools 1905.6 ms ✓ TruncatedStacktraces 1906.1 ms ✓ SciMLLogging 990.6 ms ✓ Compat → CompatLinearAlgebraExt 12159.3 ms ✓ JuliaInterpreter 4590.4 ms ✓ Tables 1280.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 22294.4 ms ✓ Moshi 1253.7 ms ✓ SortingAlgorithms 5109.1 ms ✓ QuadGK 1256.4 ms ✓ Adapt → AdaptSparseArraysExt 3889.3 ms ✓ ArrayInterface 1205.7 ms ✓ GPUArraysCore 795.2 ms ✓ EnzymeCore → AdaptExt 835.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 3070.9 ms ✓ Setfield 8084.1 ms ✓ Accessors 1516.8 ms ✓ libsodium_jll 1421.9 ms ✓ Rmath_jll 4676.2 ms ✓ IntelOpenMP_jll 1402.4 ms ✓ LSODA_jll 4586.0 ms ✓ oneTBB_jll 1333.7 ms ✓ Arpack_jll 1307.7 ms ✓ Expat_jll 1443.7 ms ✓ OpenSSH_jll 1439.0 ms ✓ Libiconv_jll 1458.5 ms ✓ Git_LFS_jll 1444.3 ms ✓ FFTW_jll 1390.6 ms ✓ OpenSpecFun_jll 17874.8 ms ✓ StaticArrays 3075.2 ms ✓ RecipesBase 3531.0 ms ✓ StringManipulation 21787.3 ms ✓ Parsers 14001.1 ms ✓ SparseMatrixColorings 8087.8 ms ✓ Static 2217.1 ms ✓ FilePathsBase 4731.2 ms ✓ ChainRulesCore 20609.6 ms ✓ LoweredCodeUtils 7056.1 ms ✓ StatsBase 1971.2 ms ✓ MaybeInplace 1257.5 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 784.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 4041.4 ms ✓ SciMLStructures 2439.6 ms ✓ PreallocationTools 802.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 816.8 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 2202.2 ms ✓ Accessors → LinearAlgebraExt 1750.0 ms ✓ Accessors → TestExt 1393.4 ms ✓ ZeroMQ_jll 1502.3 ms ✓ Rmath 9592.9 ms ✓ MKL_jll 1376.9 ms ✓ Arpack 1393.1 ms ✓ Git_jll 5248.1 ms ✓ SpecialFunctions 1349.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1413.2 ms ✓ FillArrays → FillArraysStaticArraysExt 1385.0 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1322.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1306.9 ms ✓ Adapt → AdaptStaticArraysExt 1507.3 ms ✓ Accessors → StaticArraysExt 43541.3 ms ✓ PrettyTables 3778.2 ms ✓ JSON 973.0 ms ✓ InlineStrings → ParsersExt 1697.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 948.1 ms ✓ BitTwiddlingConvenienceFunctions 2411.7 ms ✓ CPUSummary 10159.1 ms ✓ StaticArrayInterface 1419.9 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3351.0 ms ✓ FilePathsBase → FilePathsBaseTestExt 4543.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1006.5 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 920.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 1444.9 ms ✓ EnzymeCore → EnzymeCoreChainRulesCoreExt 1066.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3692.2 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 879.4 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 4393.7 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 14158.5 ms ✓ Revise 1461.2 ms ✓ PDMats → StatsBaseExt 1339.1 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1337.9 ms ✓ FiniteDiff 46061.4 ms ✓ ExponentialUtilities 7726.6 ms ✓ SciMLOperators 6518.9 ms ✓ SymbolicIndexingInterface 8503.5 ms ✓ ZMQ 7892.3 ms ✓ FFTW 942.9 ms ✓ Git 4261.0 ms ✓ FastGaussQuadrature 4675.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2256.2 ms ✓ HypergeometricFunctions 1352.5 ms ✓ DiffRules 97091.6 ms ✓ DataFrames 1832.7 ms ✓ Conda 2374.9 ms ✓ WeakRefStrings 1796.0 ms ✓ PolyesterWeave 1596.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1301.2 ms ✓ CloseOpenIntervals 1351.8 ms ✓ LayoutPointers 4001.2 ms ✓ Revise → DistributedExt 1293.9 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1384.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 990.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5195.6 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 1145.9 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1698.2 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 3080.2 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 12148.2 ms ✓ RecursiveArrayTools 57182.9 ms ✓ Documenter 5861.0 ms ✓ StatsFuns 10131.8 ms ✓ ForwardDiff 22114.0 ms ✓ IJulia 33605.0 ms ✓ CSV 2040.0 ms ✓ StrideArraysCore 1395.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 1949.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1452.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 1023.0 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4111.4 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9652.7 ms ✓ Distributions 1693.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1154.6 ms ✓ FastPower → FastPowerForwardDiffExt 4550.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2472.7 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1542.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 23967.6 ms ✓ IJulia → IJuliaReviseExt 5299.6 ms ✓ Polyester 39844.0 ms ✓ SciMLBase 3463.8 ms ✓ Distributions → DistributionsTestExt 5831.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 3546.5 ms ✓ MultivariateStats 2176.4 ms ✓ NLSolversBase 2239.8 ms ✓ FastBroadcast 4609.9 ms ✓ SciMLBase → SciMLBaseDistributionsExt 3602.9 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3682.9 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 7339.1 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 5572.8 ms ✓ LineSearches 2719.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 23429.0 ms ✓ LinearSolve 12124.2 ms ✓ SciMLJacobianOperators 6588.9 ms ✓ Optim 9237.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 9980.7 ms ✓ LinearSolve → LinearSolveSparseArraysExt 15103.1 ms ✓ LineSearch 24432.7 ms ✓ NonlinearSolveBase 4845.8 ms ✓ LinearSolve → LinearSolveEnzymeExt 3859.2 ms ✓ LineSearch → LineSearchLineSearchesExt 4137.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4661.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 4161.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3747.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 7356.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3892.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 10658.8 ms ✓ BracketingNonlinearSolve 20461.4 ms ✓ NonlinearSolveSpectralMethods 36664.1 ms ✓ NonlinearSolveQuasiNewton 54638.6 ms ✓ NonlinearSolveFirstOrder 3739.1 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 9087.9 ms ✓ DiffEqBase 4404.8 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 5756.7 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3978.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 22224.0 ms ✓ SimpleNonlinearSolve 4254.3 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4300.1 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4804.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 9417.2 ms ✓ LSODA 15282.3 ms ✓ OrdinaryDiffEqCore 4042.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 4367.0 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 39543.1 ms ✓ NonlinearSolve 6860.5 ms ✓ OrdinaryDiffEqExplicitRK 8142.9 ms ✓ OrdinaryDiffEqHighOrderRK 8685.9 ms ✓ OrdinaryDiffEqStabilizedRK 7504.2 ms ✓ OrdinaryDiffEqSymplecticRK 9644.1 ms ✓ OrdinaryDiffEqSSPRK 10724.9 ms ✓ OrdinaryDiffEqLowOrderRK 6191.6 ms ✓ OrdinaryDiffEqFunctionMap 9648.6 ms ✓ OrdinaryDiffEqLinear 17539.9 ms ✓ OrdinaryDiffEqTsit5 76782.7 ms ✓ OrdinaryDiffEqVerner 8850.2 ms ✓ OrdinaryDiffEqPRK 8288.7 ms ✓ OrdinaryDiffEqRKN 8048.0 ms ✓ OrdinaryDiffEqFeagin 7309.9 ms ✓ OrdinaryDiffEqQPRK 10446.6 ms ✓ OrdinaryDiffEqLowStorageRK 16585.5 ms ✓ OrdinaryDiffEqDifferentiation 8666.4 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 6826.2 ms ✓ OrdinaryDiffEqNordsieck 6902.7 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 14052.2 ms ✓ OrdinaryDiffEqExponentialRK 13796.8 ms ✓ OrdinaryDiffEqExtrapolation 51735.1 ms ✓ OrdinaryDiffEqRosenbrock 17344.2 ms ✓ OrdinaryDiffEqNonlinearSolve 14557.2 ms ✓ OrdinaryDiffEqPDIRK 12825.8 ms ✓ OrdinaryDiffEqStabilizedIRK 15972.5 ms ✓ OrdinaryDiffEqSDIRK 60236.6 ms ✓ OrdinaryDiffEqFIRK 12610.7 ms ✓ OrdinaryDiffEqIMEXMultistep 34362.9 ms ✓ OrdinaryDiffEqBDF 79513.1 ms ✓ OrdinaryDiffEqDefault 22514.2 ms ✓ OrdinaryDiffEq 41811.0 ms ✓ StochasticGene 293 dependencies successfully precompiled in 2066 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 2079.11s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_q2yxDR/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [e30172f5] Documenter v1.16.1 [7a1cc6ca] FFTW v1.10.0 [7073ff75] IJulia v1.34.1 ⌅ [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.3 ⌅ [429524aa] Optim v1.13.3 [1dea7af3] OrdinaryDiffEq v6.106.0 [295af30f] Revise v3.13.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [a2598c62] StochasticGene v1.6.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_q2yxDR/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.0 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.199.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.15 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [4e289a0a] EnumX v1.0.6 [f151be2c] EnzymeCore v0.8.18 [d4d017d3] ExponentialUtilities v1.30.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.34.1 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.9 [ba0b0d4f] Krylov v0.10.5 [7f56f5a3] LSODA v0.7.5 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [87fe0de2] LineSearch v0.1.6 ⌃ [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.57.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [6f1432cf] LoweredCodeUtils v3.5.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [6f286f6a] MultivariateStats v0.10.3 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Sampling StochasticGene: Test Failed at /home/pkgeval/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:20 Expression: isapprox(h1, h2, rtol = 0.05) Evaluated: isapprox([0.4081008576225247, 0.28744408149176986, 2.6859282859292124, 1.0], [0.33, 0.19, 2.5, 1.0]; rtol = 0.05) Stacktrace: [1] top-level scope @ ~/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [3] macro expansion @ ~/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:20 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] Histogram count: 6774.0 Sampling StochasticGene: Error During Test at /home/pkgeval/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:11 Got exception outside of a @test MethodError: no method matching RNAOnOffData(::String, ::String, ::Int64, ::Vector{Float64}, ::Vector{Float64}, ::Vector{Int64}, ::Vector{Int64}) The type `RNAOnOffData` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: RNAOnOffData(::String, ::String, ::Int64, ::Vector, ::Vector, ::Vector, ::Vector, !Matched::Union{Float64, Tuple{Float64, Int64}}) @ StochasticGene ~/.julia/packages/StochasticGene/UDvu2/src/common.jl:102 RNAOnOffData(::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, !Matched::Any) @ StochasticGene ~/.julia/packages/StochasticGene/UDvu2/src/common.jl:102 Stacktrace: [1] test_fit_rnaonoff(; G::Int64, R::Int64, S::Int64, transitions::Tuple{Vector{Int64}, Vector{Int64}}, insertstep::Int64, rtarget::Vector{Float64}, rinit::Vector{Float64}, nsamples::Int64, nhist::Int64, nalleles::Int64, onstates::Vector{Int64}, bins::Vector{Float64}, fittedparam::Vector{Int64}, propcv::Float64, priorcv::Float64, splicetype::String, nchains::Int64) @ StochasticGene ~/.julia/packages/StochasticGene/UDvu2/src/test.jl:216 [2] test_fit_rnaonoff() @ StochasticGene ~/.julia/packages/StochasticGene/UDvu2/src/test.jl:212 [3] top-level scope @ ~/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:13 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [5] macro expansion @ ~/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:25 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [10] _start() @ Base ./client.jl:550 Test Summary: | Pass Fail Error Total Time StochasticGene | 3 1 1 5 4m39.2s RNG of the outermost testset: Random.Xoshiro(0x8af6f59c23e07fb4, 0x7196de31859fe48e, 0x99abbb689a29a74c, 0x36939f4f5b8b50a4, 0x5e1f9467385fa656) ERROR: LoadError: Some tests did not pass: 3 passed, 1 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/StochasticGene/UDvu2/test/runtests.jl:11 Testing failed after 326.28s ERROR: LoadError: Package StochasticGene errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2539.21s: package tests unexpectedly errored