Package evaluation to test Stheno on Julia 1.12.4 (422f456051*) started at 2026-01-29T06:46:18.927 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.83s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.67 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 45561.0 ms ✓ Stheno 1 dependency successfully precompiled in 50 seconds. 152 already precompiled. Precompilation completed after 68.89s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_1t8i4G/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1t8i4G/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.3.4 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.67 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 13370.5 ms ✓ Documenter 1 dependency successfully precompiled in 14 seconds. 27 already precompiled. Precompiling packages... 135319.2 ms ✓ Pkg 16624.2 ms ✓ ChainRules 12570.0 ms ✓ KernelAbstractions 10751.7 ms ✓ ForwardDiff 4897.7 ms ✓ LazyArtifacts 3296.5 ms ✓ KernelAbstractions → SparseArraysExt 2601.2 ms ✓ KernelAbstractions → LinearAlgebraExt 2822.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 2292.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 5132.6 ms ✓ LLVMExtra_jll 17980.4 ms ✓ LLVM 6749.9 ms ✓ UnsafeAtomics → UnsafeAtomicsLLVM 18784.9 ms ✓ GPUArrays 60309.6 ms ✓ Zygote 14 dependencies successfully precompiled in 301 seconds. 92 already precompiled. Precompiling packages... 9125.2 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 10 seconds. 110 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/9Q2Lq/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#277` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m33.1s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1180s / 99.4% 30.2GiB / 99.7% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 792s 67.5% 792s 20.8GiB 69.2% 20.8GiB addition 1 436s 37.2% 436s 11.8GiB 39.3% 11.8GiB Standardised Tests (correlated sum) 1 249s 21.2% 249s 6.38GiB 21.2% 6.38GiB adj_ad 9 41.0s 3.5% 4.55s 1.04GiB 3.5% 118MiB adj_fd 9 11.4s 1.0% 1.26s 335MiB 1.1% 37.2MiB Standardised Tests (independent sum) 1 143s 12.2% 143s 5.13GiB 17.1% 5.13GiB adj_ad 9 27.8s 2.4% 3.09s 1.28GiB 4.3% 146MiB adj_fd 9 12.0s 1.0% 1.33s 321MiB 1.0% 35.7MiB Correlated GPs 1 41.3s 3.5% 41.3s 288MiB 0.9% 288MiB Consistency Tests 1 18.1s 1.5% 18.1s 118MiB 0.4% 118MiB Verify mean / kernel numerically 1 3.05s 0.3% 3.05s 45.1MiB 0.1% 45.1MiB Consistency Tests 1 1.66s 0.1% 1.66s 15.9MiB 0.1% 15.9MiB product 1 172s 14.7% 172s 4.21GiB 14.0% 4.21GiB multiply by function 1 96.6s 8.2% 96.6s 2.25GiB 7.5% 2.25GiB Diff Tests 1 58.9s 5.0% 58.9s 1.68GiB 5.6% 1.68GiB adj_ad 9 23.6s 2.0% 2.62s 919MiB 3.0% 102MiB adj_fd 9 6.80s 0.6% 755ms 124MiB 0.4% 13.8MiB Consistency Tests 1 6.45s 0.6% 6.45s 114MiB 0.4% 114MiB multiply by constant 1 75.7s 6.5% 75.7s 1.97GiB 6.5% 1.97GiB Diff Tests 1 56.6s 4.8% 56.6s 1.91GiB 6.4% 1.91GiB adj_ad 9 18.3s 1.6% 2.04s 853MiB 2.8% 94.8MiB adj_fd 9 12.5s 1.1% 1.39s 314MiB 1.0% 34.9MiB Consistency Tests 1 4.99s 0.4% 4.99s 21.5MiB 0.1% 21.5MiB GP mul errors 1 12.7ms 0.0% 12.7ms 41.1KiB 0.0% 41.1KiB compose 1 92.4s 7.9% 92.4s 2.52GiB 8.4% 2.52GiB general 1 55.7s 4.7% 55.7s 1.62GiB 5.4% 1.62GiB Diff Tests 1 48.6s 4.1% 48.6s 1.56GiB 5.2% 1.56GiB adj_ad 9 15.8s 1.3% 1.75s 780MiB 2.5% 86.7MiB adj_fd 9 5.89s 0.5% 655ms 125MiB 0.4% 13.9MiB Consistency Tests 1 5.50s 0.5% 5.50s 42.0MiB 0.1% 42.0MiB Stretch 1 29.9s 2.6% 29.9s 804MiB 2.6% 804MiB scalar stretch 1 29.0s 2.5% 29.0s 789MiB 2.6% 789MiB scalar input 1 27.9s 2.4% 27.9s 785MiB 2.5% 785MiB adj_fd 9 11.2s 1.0% 1.25s 301MiB 1.0% 33.4MiB adj_ad 9 4.17s 0.4% 463ms 148MiB 0.5% 16.5MiB vector input 1 996ms 0.1% 996ms 3.56MiB 0.0% 3.56MiB Vector stretch 1 818ms 0.1% 818ms 12.1MiB 0.0% 12.1MiB Matrix stretch 1 132ms 0.0% 132ms 3.24MiB 0.0% 3.24MiB Shift 1 3.73s 0.3% 3.73s 43.2MiB 0.1% 43.2MiB Shift{Float64} 1 1.88s 0.2% 1.88s 27.5MiB 0.1% 27.5MiB Shift{Vector{Float64}} 1 1.86s 0.2% 1.86s 15.7MiB 0.1% 15.7MiB Select 1 1.73s 0.1% 1.73s 34.4MiB 0.1% 34.4MiB evaluation 1 814ms 0.1% 814ms 22.0MiB 0.1% 22.0MiB idx isa Vector 1 543ms 0.0% 543ms 8.16MiB 0.0% 8.16MiB idx isa Integer 1 369ms 0.0% 369ms 4.28MiB 0.0% 4.28MiB Periodic 1 1.33s 0.1% 1.33s 36.0MiB 0.1% 36.0MiB cross 1 28.2s 2.4% 28.2s 1.34GiB 4.4% 1.34GiB block arrays 1 15.8s 1.3% 15.8s 878MiB 2.9% 878MiB Stheno._collect ∘ _mortar 1 13.0s 1.1% 13.0s 728MiB 2.4% 728MiB BlockVector 1 7.06s 0.6% 7.06s 315MiB 1.0% 315MiB adj_fd 1 933ms 0.1% 933ms 13.4MiB 0.0% 13.4MiB adj_ad 1 234ms 0.0% 234ms 16.7MiB 0.1% 16.7MiB BlockMatrix 1 5.96s 0.5% 5.96s 413MiB 1.3% 413MiB adj_fd 1 1.11s 0.1% 1.11s 132MiB 0.4% 132MiB adj_ad 1 61.2ms 0.0% 61.2ms 2.51MiB 0.0% 2.51MiB fdm stuff 1 2.77s 0.2% 2.77s 150MiB 0.5% 150MiB Correctness tests 1 8.30s 0.7% 8.30s 434MiB 1.4% 434MiB Standardised Tests 1 4.08s 0.3% 4.08s 58.6MiB 0.2% 58.6MiB gp 1 176s 15.0% 176s 4.97GiB 16.5% 4.97GiB adj_ad 2 21.3s 1.8% 10.7s 0.95GiB 3.2% 485MiB sparse gp 1 19.5s 1.7% 19.5s 375MiB 1.2% 375MiB SparseFiniteGP inference 1 13.7s 1.2% 13.7s 251MiB 0.8% 251MiB SparseFiniteGP methods 1 5.46s 0.5% 5.46s 119MiB 0.4% 119MiB SparseFiniteGP Constructors 1 378ms 0.0% 378ms 4.39MiB 0.0% 4.39MiB gp 1 18.1s 1.5% 18.1s 389MiB 1.3% 389MiB GP 1 17.8s 1.5% 17.8s 386MiB 1.3% 386MiB independent GPs 1 269ms 0.0% 269ms 2.79MiB 0.0% 2.79MiB wrapped AbstractGP 1 14.6ms 0.0% 14.6ms 299KiB 0.0% 299KiB adj_fd 2 3.53s 0.3% 1.77s 45.4MiB 0.1% 22.7MiB derived_gp 1 138μs 0.0% 138μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 141s 12.0% 141s 2.41GiB 8.0% 2.41GiB Zygote 1 28.6s 2.4% 28.6s 1.00GiB 3.3% 1.00GiB External Consistency 1 15.2s 1.3% 15.2s 105MiB 0.3% 105MiB nested gppp 1 15.0s 1.3% 15.0s 86.3MiB 0.3% 86.3MiB split 1 678ms 0.1% 678ms 12.5MiB 0.0% 12.5MiB gppp macro 1 63.8ms 0.0% 63.8ms 598KiB 0.0% 598KiB doctests 1 58.7s 5.0% 58.7s 1.63GiB 5.4% 1.63GiB BlockData 1 5.30s 0.5% 5.30s 242MiB 0.8% 242MiB vcat(::GPPPInput...) 1 1.32s 0.1% 1.32s 85.4MiB 0.3% 85.4MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1519.44s PkgEval succeeded after 1624.52s