Package evaluation to test RPkg on Julia 1.12.4 (422f456051*) started at 2026-01-29T08:59:20.461 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.21s ################################################################################ # Installation # Installing RPkg... Resolving package versions... Installed IrrationalConstants ───────── v0.2.6 Installed Rmath ─────────────────────── v0.9.0 Installed Conda ─────────────────────── v1.10.3 Installed HypergeometricFunctions ───── v0.3.28 Installed Preferences ───────────────── v1.5.1 Installed Crayons ───────────────────── v4.1.1 Installed PtrArrays ─────────────────── v1.3.0 Installed JSON ──────────────────────── v1.4.0 Installed StatsFuns ─────────────────── v1.5.2 Installed WinReg ────────────────────── v1.0.0 Installed TableTraits ───────────────── v1.0.1 Installed SpecialFunctions ──────────── v2.6.1 Installed PrettyTables ──────────────── v3.1.2 Installed Parsers ───────────────────── v2.8.3 Installed SentinelArrays ────────────── v1.4.9 Installed Tables ────────────────────── v1.12.1 Installed DataAPI ───────────────────── v1.16.0 Installed PooledArrays ──────────────── v1.4.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed JLLWrappers ───────────────── v1.7.1 Installed InlineStrings ─────────────── v1.4.5 Installed OrderedCollections ────────── v1.8.1 Installed PrecompileTools ───────────── v1.3.3 Installed RCall ─────────────────────── v0.13.18 Installed DataValueInterfaces ───────── v1.0.0 Installed VersionParsing ────────────── v1.3.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed CategoricalArrays ─────────── v0.10.7 Installed InvertedIndices ───────────── v1.3.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Reexport ──────────────────── v1.2.2 Installed Statistics ────────────────── v1.11.1 Installed RPkg ──────────────────────── v0.1.0 Installed DataStructures ────────────── v0.18.22 Installed StatsModels ───────────────── v0.7.8 Installed LogExpFunctions ───────────── v0.3.29 Installed Requires ──────────────────── v1.3.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed DataFrames ────────────────── v1.8.1 Installed StatsAPI ──────────────────── v1.8.0 Installed AliasTables ───────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Compat ────────────────────── v4.18.1 Installed Missings ──────────────────── v1.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed StringManipulation ────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed StructUtils ───────────────── v2.6.2 Installed StatsBase ─────────────────── v0.34.10 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [5d58af2d] + RPkg v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 ⌅ [324d7699] + CategoricalArrays v0.10.7 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 ⌅ [6f49c342] + RCall v0.13.18 [5d58af2d] + RPkg v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [81def892] + VersionParsing v1.3.0 [1b915085] + WinReg v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3084689b18f9e5e817a6ce9a83a7654d8ad0f2f6/build.log` Installation completed after 150.12s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3774.0 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 3292.1 ms ✓ OrderedCollections 635.9 ms ✓ DataValueInterfaces 714.0 ms ✓ LaTeXStrings 696.3 ms ✓ InvertedIndices 617.0 ms ✓ Reexport 882.7 ms ✓ DocStringExtensions 1483.0 ms ✓ InlineStrings 985.0 ms ✓ Statistics 4245.8 ms ✓ IrrationalConstants 724.8 ms ✓ IteratorInterfaceExtensions 668.5 ms ✓ DataAPI 681.3 ms ✓ StatsAPI 3524.3 ms ✓ Crayons 726.9 ms ✓ VersionParsing 670.4 ms ✓ PtrArrays 822.2 ms ✓ WinReg 874.1 ms ✓ ShiftedArrays 1304.1 ms ✓ Requires 2504.1 ms ✓ SentinelArrays 4431.7 ms ✓ StructUtils 4192.9 ms ✓ Compat 1136.1 ms ✓ Preferences 1308.1 ms ✓ Statistics → SparseArraysExt 1445.9 ms ✓ LogExpFunctions 754.3 ms ✓ TableTraits 3896.9 ms ✓ Missings 1027.6 ms ✓ PooledArrays 969.6 ms ✓ AliasTables 878.7 ms ✓ Compat → CompatLinearAlgebraExt 868.1 ms ✓ PrecompileTools 1186.8 ms ✓ JLLWrappers 5051.1 ms ✓ Tables 7714.9 ms ✓ CategoricalArrays 4750.6 ms ✓ DataStructures 2994.1 ms ✓ StringManipulation 22360.1 ms ✓ Parsers 1418.8 ms ✓ Rmath_jll 1875.1 ms ✓ OpenSpecFun_jll 1374.8 ms ✓ StructUtils → StructUtilsTablesExt 2406.1 ms ✓ SortingAlgorithms 46929.0 ms ✓ PrettyTables 9874.4 ms ✓ JSON 962.5 ms ✓ InlineStrings → ParsersExt 1929.0 ms ✓ Rmath 5821.6 ms ✓ SpecialFunctions 8279.4 ms ✓ StatsBase 99962.9 ms ✓ DataFrames 1879.0 ms ✓ Conda 2436.8 ms ✓ HypergeometricFunctions 6434.4 ms ✓ StatsFuns 4932.4 ms ✓ StatsModels 18842.0 ms ✓ RCall ✗ RPkg 52 dependencies successfully precompiled in 322 seconds. 29 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: RPkg Failed to precompile RPkg [5d58af2d-7d6a-4ad4-9195-74ef913580e2] to "/home/pkgeval/.julia/compiled/v1.12/RPkg/jl_cICzax". ERROR: LoadError: could not load symbol "SET_SYMVALUE": /home/pkgeval/.julia/conda/3/x86_64/lib/R/lib/libR.so: undefined symbol: SET_SYMVALUE Stacktrace: [1] set_last_value(s::Ptr{RCall.VecSxp}) @ RCall ~/.julia/packages/RCall/gOwEW/src/methods.jl:588 [2] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:126 [3] reval(str::String, env::RCall.RObject{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:136 [4] top-level scope @ ~/.julia/packages/RPkg/i1spQ/src/RPkg.jl:4 [5] macro expansion @ ~/.julia/packages/RCall/gOwEW/src/macros.jl:71 [inlined] [6] include(mod::Module, _path::String) @ Base ./Base.jl:306 [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [8] top-level scope @ stdin:5 [9] eval(m::Module, e::Any) @ Core ./boot.jl:489 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [11] include_string @ ./loading.jl:2880 [inlined] [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [13] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/src/RPkg.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 334.94s ################################################################################ # Testing # Testing RPkg Status `/tmp/jl_RedVfg/Project.toml` ⌅ [6f49c342] RCall v0.13.18 [5d58af2d] RPkg v0.1.0 [189a3867] Reexport v1.2.2 [8dfed614] Test v1.11.0 Status `/tmp/jl_RedVfg/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌅ [324d7699] CategoricalArrays v0.10.7 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 ⌅ [6f49c342] RCall v0.13.18 [5d58af2d] RPkg v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [81def892] VersionParsing v1.3.0 [1b915085] WinReg v1.0.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given RPkg was explicitly requested, output will be shown live  ERROR: LoadError: could not load symbol "SET_SYMVALUE": /home/pkgeval/.julia/conda/3/x86_64/lib/R/lib/libR.so: undefined symbol: SET_SYMVALUE Stacktrace:  [1] set_last_value(s::Ptr{RCall.VecSxp})  @ RCall ~/.julia/packages/RCall/gOwEW/src/methods.jl:588  [2] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp})  @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:126  [3] reval(str::String, env::RCall.RObject{RCall.EnvSxp})  @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:136  [4] top-level scope  @ ~/.julia/packages/RPkg/i1spQ/src/RPkg.jl:4  [5] macro expansion  @ ~/.julia/packages/RCall/gOwEW/src/macros.jl:71 [inlined]  [6] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3024  [8] top-level scope  @ stdin:5  [9] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2870  [11] include_string  @ ./loading.jl:2880 [inlined]  [12] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [13] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/src/RPkg.jl:1 in expression starting at stdin:5 ✗ RPkg 0 dependencies successfully precompiled in 16 seconds. 80 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: RPkg Failed to precompile RPkg [5d58af2d-7d6a-4ad4-9195-74ef913580e2] to "/home/pkgeval/.julia/compiled/v1.12/RPkg/jl_pSVpe8". ERROR: LoadError: could not load symbol "SET_SYMVALUE": /home/pkgeval/.julia/conda/3/x86_64/lib/R/lib/libR.so: undefined symbol: SET_SYMVALUE Stacktrace: [1] set_last_value(s::Ptr{RCall.VecSxp}) @ RCall ~/.julia/packages/RCall/gOwEW/src/methods.jl:588 [2] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:126 [3] reval(str::String, env::RCall.RObject{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/gOwEW/src/eval.jl:136 [4] top-level scope @ ~/.julia/packages/RPkg/i1spQ/src/RPkg.jl:4 [5] macro expansion @ ~/.julia/packages/RCall/gOwEW/src/macros.jl:71 [inlined] [6] include(mod::Module, _path::String) @ Base ./Base.jl:306 [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [8] top-level scope @ stdin:5 [9] eval(m::Module, e::Any) @ Core ./boot.jl:489 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [11] include_string @ ./loading.jl:2880 [inlined] [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [13] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/src/RPkg.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/RPkg/i1spQ/test/runtests.jl:1 Testing failed after 26.3s ERROR: LoadError: Package RPkg errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 592.92s: package fails to precompile