Package evaluation to test PyBoltz on Julia 1.12.4 (422f456051*) started at 2026-01-29T04:44:23.789


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.42s


################################################################################
# Installation
#

Installing PyBoltz...
   Resolving package versions...
   Installed MicroMamba ────────────────── v0.1.14
   Installed JSON3 ─────────────────────── v1.14.3
   Installed Scratch ───────────────────── v1.3.0
   Installed TableTraits ───────────────── v1.0.1
   Installed Parsers ───────────────────── v2.8.3
   Installed Tables ────────────────────── v1.12.1
   Installed Preferences ───────────────── v1.5.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed micromamba_jll ────────────── v1.5.12+0
   Installed JLLWrappers ───────────────── v1.7.1
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed StringEncodings ───────────── v0.3.7
   Installed Pidfile ───────────────────── v1.3.0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed PythonCall ────────────────── v0.9.31
   Installed DataValueInterfaces ───────── v1.0.0
   Installed OrderedCollections ────────── v1.8.1
   Installed MacroTools ────────────────── v0.5.16
   Installed PrecompileTools ───────────── v1.3.3
   Installed UnsafePointers ────────────── v1.0.0
   Installed Compat ────────────────────── v4.18.1
   Installed CondaPkg ──────────────────── v0.2.33
   Installed YAML ──────────────────────── v0.4.16
   Installed StructTypes ───────────────── v1.11.0
   Installed pixi_jll ──────────────────── v0.41.3+0
   Installed PyBoltz ───────────────────── v0.2.2
  Installing 1 artifacts
   Installed artifact Libiconv 1.9 MiB
    Updating `~/.julia/environments/v1.12/Project.toml`
  [0bca4874] + PyBoltz v0.2.2
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [34da2185] + Compat v4.18.1
  [992eb4ea] + CondaPkg v0.2.33
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [0f8b85d8] + JSON3 v1.14.3
  [1914dd2f] + MacroTools v0.5.16
  [0b3b1443] + MicroMamba v0.1.14
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [fa939f87] + Pidfile v1.3.0
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [0bca4874] + PyBoltz v0.2.2
  [6099a3de] + PythonCall v0.9.31
  [6c6a2e73] + Scratch v1.3.0
  [69024149] + StringEncodings v0.3.7
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [e17b2a0c] + UnsafePointers v1.0.0
  [ddb6d928] + YAML v0.4.16
  [94ce4f54] + Libiconv_jll v1.18.0+0
⌅ [f8abcde7] + micromamba_jll v1.5.12+0
  [4d7b5844] + pixi_jll v0.41.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.1
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+0
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.98s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4050.1 ms  ✓ TestEnv
  1 dependency successfully precompiled in 4 seconds. 26 already precompiled.

Precompiling package dependencies...
Precompiling packages...
   3862.0 ms  ✓ OrderedCollections
   2472.1 ms  ✓ Format
    732.9 ms  ✓ DataValueInterfaces
   1069.8 ms  ✓ Statistics
    781.1 ms  ✓ Twiddle
    849.1 ms  ✓ UnsafePointers
    737.5 ms  ✓ IteratorInterfaceExtensions
    832.6 ms  ✓ DataAPI
   7623.0 ms  ✓ MacroTools
   1073.6 ms  ✓ IntervalTrees
   1291.1 ms  ✓ TranscodingStreams
   4072.6 ms  ✓ StructTypes
    888.8 ms  ✓ Scratch
   3756.2 ms  ✓ Compat
   1144.8 ms  ✓ Preferences
   1057.6 ms  ✓ Pidfile
    767.7 ms  ✓ TableTraits
    955.4 ms  ✓ CodecZlib
   4178.1 ms  ✓ BioGenerics
   1176.7 ms  ✓ Compat → CompatLinearAlgebraExt
   1137.5 ms  ✓ PrecompileTools
   1490.9 ms  ✓ JLLWrappers
   4844.3 ms  ✓ Tables
   2562.0 ms  ✓ BioSymbols
   3127.6 ms  ✓ RecipesBase
  21680.6 ms  ✓ Parsers
   1342.0 ms  ✓ Libiconv_jll
   4689.5 ms  ✓ micromamba_jll
   4668.8 ms  ✓ pixi_jll
   1382.6 ms  ✓ TMscore_jll
  13240.5 ms  ✓ BioSequences
  19045.2 ms  ✓ BioStructures
  19233.1 ms  ✓ JSON3
   1038.3 ms  ✓ StringEncodings
   8689.7 ms  ✓ MicroMamba
   1158.1 ms  ✓ TMscore
   3669.8 ms  ✓ BioAlignments
   1611.6 ms  ✓ BioStructures → BioStructuresBioSequencesExt
   5774.1 ms  ✓ YAML
  10272.2 ms  ✓ CondaPkg
   1487.4 ms  ✓ TMscore → BioStructuresExt
   1859.7 ms  ✓ BioStructures → BioStructuresBioAlignmentsExt
  39722.5 ms  ✓ PythonCall
 174577.4 ms  ✓ PyBoltz
  20206.3 ms  ✓ PyBoltz → BioStructuresExt
  45 dependencies successfully precompiled in 408 seconds. 31 already precompiled.
  3 dependencies had output during precompilation:
┌ PyBoltz
│  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PyBoltz/PGqPe/CondaPkg.toml
│      CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml
│      CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml
│      CondaPkg Resolving changes
│               + boltz (pip)
│               + libstdcxx
│               + libstdcxx-ng
│               + openssl
│               + python
│               + uv
│      CondaPkg Initialising pixi
│               │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
│               │ init
│               │ --format pixi
│               └ /tmp/jl_pWx4EJ/.CondaPkg
│  ✔ Created /tmp/jl_pWx4EJ/.CondaPkg/pixi.toml
│      CondaPkg Wrote /tmp/jl_pWx4EJ/.CondaPkg/pixi.toml
│               │ [dependencies]
│               │ openssl = ">=3, <3.6"
│               │ libstdcxx = ">=3.4,<15.0"
│               │ uv = ">=0.4"
│               │ libstdcxx-ng = ">=3.4,<15.0"
│               │ 
│               │     [dependencies.python]
│               │     channel = "conda-forge"
│               │     build = "*cp*"
│               │     version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.10,<3.13"
│               │ 
│               │ [project]
│               │ name = ".CondaPkg"
│               │ platforms = ["linux-64"]
│               │ channels = ["conda-forge"]
│               │ channel-priority = "strict"
│               │ description = "automatically generated by CondaPkg.jl"
│               │ 
│               │ [pypi-dependencies.boltz]
│               │ extras = ["cuda"]
│               └ version = "~=2.2"
│      CondaPkg Installing packages
│               │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
│               │ install
│               └ --manifest-path /tmp/jl_pWx4EJ/.CondaPkg/pixi.toml
│  ✔ The default environment has been installed.
└  
┌ CondaPkg
│  Downloading artifact: pixi
└  
┌ MicroMamba
│  Downloading artifact: micromamba
└  

Precompilation completed after 407.32s


################################################################################
# Testing
#

     Testing PyBoltz
      Status `/tmp/jl_QINAe8/Project.toml`
  [00701ae9] BioAlignments v3.1.0
  [7e6ae17a] BioSequences v3.5.1
  [de9282ab] BioStructures v4.7.0
  [0bca4874] PyBoltz v0.2.2
  [6e960f36] TMscore v0.1.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_QINAe8/Manifest.toml`
  [00701ae9] BioAlignments v3.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.1
  [de9282ab] BioStructures v4.7.0
  [3c28c6f8] BioSymbols v5.2.0
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.18.1
  [992eb4ea] CondaPkg v0.2.33
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [1fa38f19] Format v1.3.7
  [524e6230] IntervalTrees v1.1.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [0f8b85d8] JSON3 v1.14.3
  [1914dd2f] MacroTools v0.5.16
  [0b3b1443] MicroMamba v0.1.14
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [fa939f87] Pidfile v1.3.0
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
  [0bca4874] PyBoltz v0.2.2
  [6099a3de] PythonCall v0.9.31
  [3cdcf5f2] RecipesBase v1.3.4
  [6c6a2e73] Scratch v1.3.0
  [10745b16] Statistics v1.11.1
  [69024149] StringEncodings v0.3.7
  [856f2bd8] StructTypes v1.11.0
  [6e960f36] TMscore v0.1.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [7200193e] Twiddle v1.1.2
  [e17b2a0c] UnsafePointers v1.0.0
  [ddb6d928] YAML v0.4.16
  [94ce4f54] Libiconv_jll v1.18.0+0
  [1d8dad79] TMscore_jll v1.0.0+0
⌅ [f8abcde7] micromamba_jll v1.5.12+0
  [4d7b5844] pixi_jll v0.41.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.1
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+0
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PyBoltz/PGqPe/CondaPkg.toml
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml
    CondaPkg Resolving changes
             + boltz (pip)
             + libstdcxx
             + libstdcxx-ng
             + openssl
             + python
             + uv
    CondaPkg Initialising pixi
             │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
             │ init
             │ --format pixi
             └ /tmp/jl_QINAe8/.CondaPkg
✔ Created /tmp/jl_QINAe8/.CondaPkg/pixi.toml
    CondaPkg Wrote /tmp/jl_QINAe8/.CondaPkg/pixi.toml
             │ [dependencies]
             │ openssl = ">=3, <3.6"
             │ libstdcxx = ">=3.4,<15.0"
             │ uv = ">=0.4"
             │ libstdcxx-ng = ">=3.4,<15.0"
             │ 
             │     [dependencies.python]
             │     channel = "conda-forge"
             │     build = "*cp*"
             │     version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.10,<3.13"
             │ 
             │ [project]
             │ name = ".CondaPkg"
             │ platforms = ["linux-64"]
             │ channels = ["conda-forge"]
             │ channel-priority = "strict"
             │ description = "automatically generated by CondaPkg.jl"
             │ 
             │ [pypi-dependencies.boltz]
             │ extras = ["cuda"]
             └ version = "~=2.2"
    CondaPkg Installing packages
             │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
             │ install
             └ --manifest-path /tmp/jl_QINAe8/.CondaPkg/pixi.toml
✔ The default environment has been installed.
[ Info: Downloading file from PDB: 1TIT
Running on CPU, this will be slow. Consider using a GPU.
Seed set to 0
Downloading the CCD data to /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache/mols.tar. This may take a bit of time. You may change the cache directory with the --cache flag.
Extracting the CCD data to /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache/mols. This may take a bit of time. You may change the cache directory with the --cache flag.
Downloading the Boltz-2 weights to /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache/boltz2_conf.ckpt. You may change the cache directory with the --cache flag.
Downloading the Boltz-2 affinity weights to /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache/boltz2_aff.ckpt. You may change the cache directory with the --cache flag.
Checking input data.
Processing 1 inputs with 1 threads.

  0%|          | 0/1 [00:00<?, ?it/s]Found explicit empty MSA for some proteins, will run these in single sequence mode. Keep in mind that the model predictions will be suboptimal without an MSA.

100%|██████████| 1/1 [00:00<00:00, 18.46it/s]
Using bfloat16 Automatic Mixed Precision (AMP)
GPU available: False, used: False
TPU available: False, using: 0 TPU cores
HPU available: False, using: 0 HPUs
/tmp/jl_QINAe8/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/pytorch_lightning/trainer/connectors/logger_connector/logger_connector.py:76: Starting from v1.9.0, `tensorboardX` has been removed as a dependency of the `pytorch_lightning` package, due to potential conflicts with other packages in the ML ecosystem. For this reason, `logger=True` will use `CSVLogger` as the default logger, unless the `tensorboard` or `tensorboardX` packages are found. Please `pip install lightning[extra]` or one of them to enable TensorBoard support by default
Running structure prediction for 1 input.
/tmp/jl_QINAe8/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/pytorch_lightning/utilities/migration/utils.py:56: The loaded checkpoint was produced with Lightning v2.5.0.post0, which is newer than your current Lightning version: v2.5.0
/tmp/jl_QINAe8/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/utils/data/dataloader.py:424: UserWarning: This DataLoader will create 2 worker processes in total. Our suggested max number of worker in current system is 1, which is smaller than what this DataLoader is going to create. Please be aware that excessive worker creation might get DataLoader running slow or even freeze, lower the worker number to avoid potential slowness/freeze if necessary.
  self.check_worker_number_rationality()
/tmp/jl_QINAe8/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/pytorch_lightning/utilities/_pytree.py:21: `isinstance(treespec, LeafSpec)` is deprecated, use `isinstance(treespec, TreeSpec) and treespec.is_leaf()` instead.
/tmp/jl_QINAe8/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/utils/data/dataloader.py:432: UserWarning: This DataLoader will create 2 worker processes in total. Our suggested max number of worker in current system is 1, which is smaller than what this DataLoader is going to create. Please be aware that excessive worker creation might get DataLoader running slow or even freeze, lower the worker number to avoid potential slowness/freeze if necessary.
  self.check_worker_number_rationality()
/tmp/jl_QINAe8/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/utils/data/dataloader.py:1118: UserWarning: 'pin_memory' argument is set as true but no accelerator is found, then device pinned memory won't be used.
  super().__init__(loader)

Predicting: |          | 0/? [00:00<?, ?it/s]
Predicting:   0%|          | 0/1 [00:00<?, ?it/s]
Predicting DataLoader 0:   0%|          | 0/1 [00:00<?, ?it/s]
======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 412 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
task_done_hook at ./task.jl:868
jfptr_task_done_hook_67638.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2391 [inlined]
jl_finish_task at /source/src/task.c:341
start_task at /source/src/task.c:1263
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#398 at ./condition.jl:141
wait at ./process.jl:685
wait at ./process.jl:686
jfptr_wait_46335.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2553
unknown function (ip: 0x7fc3b01956e3) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
#205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2493
withenv at ./env.jl:265
#190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2308
with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2161
#186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2275
#mktempdir#21 at ./file.jl:936
unknown function (ip: 0x7fc3b01829dc) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
mktempdir at ./file.jl:932
mktempdir at ./file.jl:932
#sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2222 [inlined]
sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2212
unknown function (ip: 0x7fc3b01810c1) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
#test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2478
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined]
#test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:538
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:515
unknown function (ip: 0x7fc3b0180611) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
#test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
unknown function (ip: 0x7fc3b0178640) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158
#test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
#test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156
unknown function (ip: 0x7fc3b0175e1f) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2391 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
include_string at ./loading.jl:2870
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
_include at ./loading.jl:2930
include at ./Base.jl:306
exec_options at ./client.jl:317
_start at ./client.jl:550
jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2391 [inlined]
true_main at /source/src/jlapi.c:971
jl_repl_entrypoint at /source/src/jlapi.c:1139
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7fc3ca72b249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007e482bf6b580 Total snapshots: 406. Utilization: 0%
   ╎406 @Base/task.jl:868  task_done_hook(t::Task)
   ╎ 406 @Base/task.jl:1228  wait()
405╎  406 @Base/task.jl:1216  poptask(W::Base.IntrusiveLinkedListSynchronized{T…

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007fc3b01fc010 Total snapshots: 83. Utilization: 0%
  ╎83 @Base/client.jl:550  _start()
  ╎ 83 @Base/client.jl:317  exec_options(opts::Base.JLOptions)
  ╎  83 @Base/Base.jl:306  include(mod::Module, _path::String)
  ╎   83 @Base/loading.jl:2930  _include(mapexpr::Function, mod::Module, _path:…
  ╎    83 @Base/loading.jl:2870  include_string(mapexpr::typeof(identity), mod:…
  ╎     83 @Base/boot.jl:489  eval(m::Module, e::Any)
  ╎    ╎ 83 @Pkg/src/API.jl:156  kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo…
  ╎    ╎  83 @Pkg/src/API.jl:156  #test#81
  ╎    ╎   83 @Pkg/src/API.jl:157  test
  ╎    ╎    83 @Pkg/src/API.jl:157  test(pkgs::Vector{String}; kwargs::Base.Pai…
  ╎    ╎     83 @Pkg/src/API.jl:158  kwcall(::@NamedTuple{julia_args::Cmd}, ::t…
  ╎    ╎    ╎ 83 @Pkg/src/API.jl:169  test(pkgs::Vector{PackageSpec}; io::IOCon…
  ╎    ╎    ╎  83 @Pkg/src/API.jl:515  kwcall(::@NamedTuple{julia_args::Cmd, io…
  ╎    ╎    ╎   83 @Pkg/src/API.jl:538  test(ctx::Pkg.Types.Context, pkgs::Vect…
  ╎    ╎    ╎    83 @Pkg/…perations.jl:2384  test
  ╎    ╎    ╎     83 @Pkg/…perations.jl:2478  test(ctx::Pkg.Types.Context, pkgs…
  ╎    ╎    ╎    ╎ 83 @Pkg/…erations.jl:2212  kwcall(::@NamedTuple{preferences:…
  ╎    ╎    ╎    ╎  83 @Pkg/…erations.jl:2222  #sandbox#182
  ╎    ╎    ╎    ╎   83 @Base/file.jl:932  mktempdir(fn::Function)
  ╎    ╎    ╎    ╎    83 @Base/file.jl:932  mktempdir(fn::Function, parent::Str…
  ╎    ╎    ╎    ╎     83 @Base/file.jl:936  mktempdir(fn::Pkg.Operations.var"#…
  ╎    ╎    ╎    ╎    ╎ 83 @Pkg/…ations.jl:2275  (::Pkg.Operations.var"#186#187…
  ╎    ╎    ╎    ╎    ╎  83 @Pkg/…ations.jl:2161  with_temp_env(fn::Pkg.Operati…
  ╎    ╎    ╎    ╎    ╎   83 @Pkg/…tions.jl:2308  (::Pkg.Operations.var"#190#19…
  ╎    ╎    ╎    ╎    ╎    83 @Base/env.jl:265  withenv(::Pkg.Operations.var"#2…
  ╎    ╎    ╎    ╎    ╎     83 @Pkg/…tions.jl:2493  (::Pkg.Operations.var"#205#…
  ╎    ╎    ╎    ╎    ╎    ╎ 83 @Pkg/…ions.jl:2553  subprocess_handler(cmd::Cmd…
  ╎    ╎    ╎    ╎    ╎    ╎  83 @Base/…ess.jl:686  wait(x::Base.Process)
  ╎    ╎    ╎    ╎    ╎    ╎   83 @Base/…ess.jl:685  wait(x::Base.Process, sync…
  ╎    ╎    ╎    ╎    ╎    ╎    83 @Base/…on.jl:141  wait(c::Base.GenericCondit…
  ╎    ╎    ╎    ╎    ╎    ╎     83 @Base/…sk.jl:1228  wait()
82╎    ╎    ╎    ╎    ╎    ╎    ╎ 83 @Base/…sk.jl:1216  poptask(W::Base.Intrusi…


[412] signal 15: Terminated
in expression starting at /home/pkgeval/.julia/packages/PyBoltz/PGqPe/test/runtests.jl:13
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#398 at ./condition.jl:141
_trywait at ./asyncevent.jl:163
profile_printing_listener at ./Base.jl:332
#start_profile_listener##0 at ./Base.jl:352
jfptr_YY.start_profile_listenerYY.YY.0_18905.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2391 [inlined]
start_task at /source/src/task.c:1252
unknown function (ip: (nil)) at (unknown file)
Allocations: 24466708 (Pool: 24466518; Big: 190); GC: 14
[rank: 0] Received SIGTERM: 15

PkgEval terminated after 2723.03s: test duration exceeded the time limit